assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002812545.1_ASM281254v1	NZ_CP025048	Escherichia coli strain SC516 chromosome, complete genome	1	353003-353123	1	CRISPRCasFinder	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	Orphan	AAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCAT	40	1	2	353043-353083|353043-353083	NZ_CP025048.1_764990-764950|NZ_CP025048.1_3118033-3117993	NA	1	1	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	NA|93aa|up_4|NZ_CP025048.1_348894_349173_-,NA|84aa|up_3|NZ_CP025048.1_349239_349491_-,NA|134aa|up_0|NZ_CP025048.1_351825_352227_-,NA	NA|238aa|up_9|NZ_CP025048.1_344496_345210_-	PRK09940, PRK09940, transcriptional regulator YdeO; Provisional	NA|320aa|up_8|NZ_CP025048.1_345616_346576_-	COG3272, COG3272, Uncharacterized conserved protein [Function unknown]	NA|175aa|up_7|NZ_CP025048.1_346768_347293_+	PRK10477, PRK10477, outer membrane lipoprotein Blc; Provisional	NA|126aa|up_6|NZ_CP025048.1_347448_347826_-	pfam06530, Phage_antitermQ, Phage antitermination protein Q	NA|350aa|up_5|NZ_CP025048.1_347843_348893_-	pfam06147, DUF968, Protein of unknown function (DUF968)	NA|93aa|up_4|NZ_CP025048.1_348894_349173_-	NA	NA|84aa|up_3|NZ_CP025048.1_349239_349491_-	NA	NA|71aa|up_2|NZ_CP025048.1_349707_349920_-	pfam01848, HOK_GEF, Hok/gef family	NA|388aa|up_1|NZ_CP025048.1_350367_351530_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|134aa|up_0|NZ_CP025048.1_351825_352227_-	NA	NA|531aa|down_0|NZ_CP025048.1_353514_355107_-	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|62aa|down_1|NZ_CP025048.1_355440_355626_+	pfam14266, YceG_bac, Putative component of 'biosynthetic module'	NA|109aa|down_2|NZ_CP025048.1_356350_356677_-	PRK10083, PRK10083, putative oxidoreductase; Provisional	NA|405aa|down_3|NZ_CP025048.1_356688_357903_-	PRK15072, PRK15072, D-galactonate dehydratase family protein	NA|109aa|down_4|NZ_CP025048.1_358108_358435_-	PRK02237, PRK02237, YnfA family protein	NA|114aa|down_5|NZ_CP025048.1_358569_358911_+	PRK13659, PRK13659, DUF1283 family protein	NA|187aa|down_6|NZ_CP025048.1_358945_359506_+	PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional	NA|237aa|down_7|NZ_CP025048.1_359508_360219_-	PRK02939, PRK02939, YnfC family lipoprotein	NA|102aa|down_8|NZ_CP025048.1_360326_360632_+	pfam06649, DUF1161, Protein of unknown function (DUF1161)	NA|809aa|down_9|NZ_CP025048.1_360830_363257_+	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family
GCF_002812545.1_ASM281254v1	NZ_CP025048	Escherichia coli strain SC516 chromosome, complete genome	2	1577454-1577667	1,2	CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTCT,CGGTTTATCCCCGCTGGCGCGGGGAACTCTC	30,31	0	0	NA	NA	I-E:I-E	3,2	3	TypeI-E	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	NA,NA	NA|209aa|up_9|NZ_CP025048.1_1568708_1569335_-	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|254aa|up_8|NZ_CP025048.1_1569328_1570090_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_7|NZ_CP025048.1_1570070_1571120_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_6|NZ_CP025048.1_1571116_1571596_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|104aa|up_5|NZ_CP025048.1_1572323_1572635_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP025048.1_1572828_1573152_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP025048.1_1573201_1573807_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP025048.1_1573806_1575234_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP025048.1_1575235_1576144_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP025048.1_1576395_1577433_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP025048.1_1577770_1578055_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP025048.1_1578056_1578974_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP025048.1_1578989_1579589_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP025048.1_1579575_1580250_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP025048.1_1580252_1581344_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_CP025048.1_1581356_1581839_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|451aa|down_6|NZ_CP025048.1_1581987_1583340_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_CP025048.1_1583754_1586421_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_CP025048.1_1586779_1587514_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP025048.1_1587587_1589300_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_002812545.1_ASM281254v1	NZ_CP025048	Escherichia coli strain SC516 chromosome, complete genome	3	1603215-1603793	3,2,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,28	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Unclear	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	NA,NA	NA|122aa|up_9|NZ_CP025048.1_1591414_1591780_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|87aa|up_8|NZ_CP025048.1_1593119_1593380_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP025048.1_1593396_1593972_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP025048.1_1594119_1594980_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP025048.1_1594976_1595756_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP025048.1_1595733_1597071_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP025048.1_1597164_1598619_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP025048.1_1598688_1599474_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP025048.1_1599792_1601070_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP025048.1_1601096_1602575_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP025048.1_1604132_1604804_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|291aa|down_1|NZ_CP025048.1_1605097_1605970_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_2|NZ_CP025048.1_1606029_1607328_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP025048.1_1607415_1609053_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP025048.1_1609280_1610072_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP025048.1_1610142_1610478_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP025048.1_1610477_1610726_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP025048.1_1610803_1613038_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP025048.1_1613085_1614387_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP025048.1_1614443_1617200_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCF_002812545.1_ASM281254v1	NZ_CP025048	Escherichia coli strain SC516 chromosome, complete genome	4	3462874-3463015	4	CRISPRCasFinder	no	RT	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	Unclear	AATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACA	41	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	NA,NA	NA|200aa|up_9|NZ_CP025048.1_3450983_3451583_+	pfam06316, Ail_Lom, Enterobacterial Ail/Lom protein	NA|1091aa|up_8|NZ_CP025048.1_3451647_3454920_+	pfam08400, phage_tail_N, Prophage tail fibre N-terminal	NA|43aa|up_7|NZ_CP025048.1_3454974_3455103_+	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK	RT|535aa|up_6|NZ_CP025048.1_3455547_3457152_-	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	NA|87aa|up_5|NZ_CP025048.1_3457509_3457770_-	PRK10597, PRK10597, DNA damage-inducible protein I; Provisional	NA|529aa|up_4|NZ_CP025048.1_3457989_3459576_+	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|202aa|up_3|NZ_CP025048.1_3459968_3460574_+	PRK10568, PRK10568, molecular chaperone OsmY	NA|54aa|up_2|NZ_CP025048.1_3460700_3460862_+	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|358aa|up_1|NZ_CP025048.1_3460983_3462057_+	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|261aa|up_0|NZ_CP025048.1_3462053_3462836_+	PRK11449, PRK11449, metal-dependent hydrolase	NA|288aa|down_0|NZ_CP025048.1_3463250_3464114_-	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family	NA|517aa|down_1|NZ_CP025048.1_3464085_3465636_-	PRK10977, PRK10977, hypothetical protein; Provisional	NA|260aa|down_2|NZ_CP025048.1_3465894_3466674_+	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|441aa|down_3|NZ_CP025048.1_3466840_3468163_+	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|408aa|down_4|NZ_CP025048.1_3468214_3469438_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|240aa|down_5|NZ_CP025048.1_3469494_3470214_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|444aa|down_6|NZ_CP025048.1_3470392_3471724_+	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|339aa|down_7|NZ_CP025048.1_3471724_3472741_-	PRK03822, lplA, lipoate-protein ligase A; Provisional	NA|215aa|down_8|NZ_CP025048.1_3472768_3473413_-	PRK11246, PRK11246, YtjB family periplasmic protein	NA|323aa|down_9|NZ_CP025048.1_3473518_3474487_+	PRK11133, serB, phosphoserine phosphatase; Provisional
GCF_002812545.1_ASM281254v1	NZ_CP025048	Escherichia coli strain SC516 chromosome, complete genome	5	3850820-3850964	5	CRISPRCasFinder	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	NA|28aa|up_2|NZ_CP025048.1_3848690_3848774_+,NA	NA|372aa|up_9|NZ_CP025048.1_3843446_3844562_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NZ_CP025048.1_3844578_3845388_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|155aa|up_7|NZ_CP025048.1_3845507_3845972_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_CP025048.1_3846148_3846673_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_CP025048.1_3846722_3846914_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_CP025048.1_3847171_3847849_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_CP025048.1_3847920_3848205_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_CP025048.1_3848690_3848774_+	NA	NA|304aa|up_1|NZ_CP025048.1_3848851_3849763_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NZ_CP025048.1_3849887_3850796_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_CP025048.1_3851040_3852225_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|NZ_CP025048.1_3852350_3855497_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NZ_CP025048.1_3855493_3856696_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NZ_CP025048.1_3856885_3857575_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NZ_CP025048.1_3857632_3858928_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NZ_CP025048.1_3859334_3860654_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NZ_CP025048.1_3860729_3862103_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|down_7|NZ_CP025048.1_3862258_3864076_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NZ_CP025048.1_3864080_3864662_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NZ_CP025048.1_3864754_3865825_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_002812545.1_ASM281254v1	NZ_CP025048	Escherichia coli strain SC516 chromosome, complete genome	6	3991629-3991725	6	CRISPRCasFinder	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	NA,NA	NA|259aa|up_9|NZ_CP025048.1_3976227_3977004_+	PRK09997, PRK09997, hydroxypyruvate isomerase; Provisional	NA|293aa|up_8|NZ_CP025048.1_3977103_3977982_+	PRK15059, PRK15059, 2-hydroxy-3-oxopropionate reductase	NA|485aa|up_7|NZ_CP025048.1_3978150_3979605_+	PRK11375, PRK11375, putative allantoin permease	NA|454aa|up_6|NZ_CP025048.1_3979664_3981026_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_5|NZ_CP025048.1_3981082_3982384_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_4|NZ_CP025048.1_3982405_3983551_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_3|NZ_CP025048.1_3984554_3985340_-	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|420aa|up_2|NZ_CP025048.1_3988619_3989879_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP025048.1_3989889_3990705_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP025048.1_3990701_3991595_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP025048.1_3991789_3992857_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP025048.1_3992853_3993363_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP025048.1_3993480_3994203_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP025048.1_3994205_3994700_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP025048.1_3994873_3996259_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP025048.1_3996294_3996816_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP025048.1_3996923_3997136_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP025048.1_3997137_3998004_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP025048.1_3998474_3999017_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|308aa|down_9|NZ_CP025048.1_4001292_4002216_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain
