The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	0	21975	4190038	tRNA	Planktothrix_phage(33.33%)	39	NA	NA
WP_003421175.1|584_896_+	30S ribosomal protein S10	NA	NA	NA	NA	NA
WP_003421173.1|987_1617_+	50S ribosomal protein L3	NA	NA	NA	NA	NA
WP_009887887.1|1646_2270_+	50S ribosomal protein L4	NA	NA	NA	NA	NA
WP_003421170.1|2269_2560_+	50S ribosomal protein L23	NA	NA	NA	NA	NA
WP_003421168.1|2589_3420_+	50S ribosomal protein L2	NA	NA	NA	NA	NA
WP_003421166.1|3454_3736_+	30S ribosomal protein S19	NA	NA	NA	NA	NA
WP_009887891.1|3767_4103_+	50S ribosomal protein L22	NA	NA	NA	NA	NA
WP_003421163.1|4125_4941_+	30S ribosomal protein S3	NA	NA	NA	NA	NA
WP_003421160.1|4976_5408_+	50S ribosomal protein L16	NA	NA	NA	NA	NA
WP_003421158.1|5409_5613_+	50S ribosomal protein L29	NA	NA	NA	NA	NA
WP_003421156.1|5636_5891_+	30S ribosomal protein S17	NA	NA	NA	NA	NA
WP_003421155.1|5916_6285_+	50S ribosomal protein L14	NA	NA	NA	NA	NA
WP_003427723.1|6308_6614_+	50S ribosomal protein L24	NA	NA	NA	NA	NA
WP_003435673.1|6643_7186_+	50S ribosomal protein L5	NA	NA	NA	NA	NA
WP_003421149.1|7203_7389_+	type Z 30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_003421148.1|7421_7820_+	30S ribosomal protein S8	NA	NA	NA	NA	NA
WP_003435668.1|7850_8393_+	50S ribosomal protein L6	NA	NA	NA	NA	NA
WP_003421141.1|8428_8797_+	50S ribosomal protein L18	NA	NA	NA	NA	NA
WP_003421138.1|8817_9327_+	30S ribosomal protein S5	NA	NA	NA	NA	NA
WP_003421137.1|9341_9527_+	50S ribosomal protein L30	NA	NA	NA	NA	NA
WP_003421135.1|9559_10003_+	50S ribosomal protein L15	NA	NA	NA	NA	NA
WP_003427725.1|10046_11315_+	preprotein translocase subunit SecY	NA	NA	NA	NA	NA
WP_009887904.1|11331_11982_+	adenylate kinase	NA	NA	NA	NA	NA
WP_003421130.1|11982_12729_+	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_009895197.1|12750_13020_+	KOW domain-containing protein	NA	NA	NA	NA	NA
WP_003421127.1|13057_13276_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_002509257.1|13311_13425_+	50S ribosomal protein L36	NA	NA	NA	NA	NA
WP_003421125.1|13577_13949_+	30S ribosomal protein S13	NA	NA	NA	NA	NA
WP_003421122.1|13984_14383_+	30S ribosomal protein S11	NA	NA	NA	NA	NA
WP_003421121.1|14414_15038_+	30S ribosomal protein S4	NA	NA	NA	NA	NA
WP_003427733.1|15115_16063_+	DNA-directed RNA polymerase subunit alpha	NA	NA	NA	NA	NA
WP_003421117.1|16083_16425_+	50S ribosomal protein L17	NA	NA	NA	NA	NA
WP_003435660.1|16544_17378_+	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	30.0	4.6e-17
WP_009887937.1|17365_18232_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	29.9	4.1e-16
WP_003427737.1|18225_19029_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_003435654.1|19060_19792_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_003421107.1|19911_20343_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_003421105.1|20371_20764_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_003435644.1|21222_21975_+	N-acetylmuramoyl-L-alanine amidase CwlD	NA	A0A067ZJB6	Vibrio_phage	30.5	4.9e-10
>prophage 2
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	35900	38813	4190038		Clostridium_phage(100.0%)	2	NA	NA
WP_009892488.1|35900_38252_+	anaerobic ribonucleoside triphosphate reductase	NA	A0A0A8WEK0	Clostridium_phage	44.5	3.8e-173
WP_003432598.1|38273_38813_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0A8WJI9	Clostridium_phage	45.3	1.1e-30
>prophage 3
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	59731	63177	4190038		Bacillus_phage(50.0%)	2	NA	NA
WP_009887954.1|59731_61078_+	phosphoglucosamine mutase	NA	A0A127AWJ1	Bacillus_phage	25.2	2.4e-23
WP_009892563.1|61344_63177_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	41.8	1.1e-116
>prophage 4
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	67499	77454	4190038	protease	Clostridium_phage(40.0%)	9	NA	NA
WP_009887965.1|67499_68564_+	stage II sporulation protein D	NA	Q2XU88	Pseudomonas_phage	36.0	4.1e-34
WP_003425452.1|68629_69298_+	M23 family metallopeptidase	NA	NA	NA	NA	NA
WP_003420727.1|69395_69656_+	sporulation transcriptional regulator SpoIIID	NA	M9Q261	Clostridium_phage	58.7	2.1e-16
WP_003420729.1|69852_70872_+	rod shape-determining protein	NA	NA	NA	NA	NA
WP_009887968.1|70887_71316_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_009887970.1|71426_71936_-|protease	spore protease YyaC	protease	A0A0A8WIQ6	Clostridium_phage	40.4	3.8e-30
WP_003432462.1|72364_73558_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	68.3	2.4e-152
WP_009887971.1|73873_74971_+	membrane protein	NA	NA	NA	NA	NA
WP_003434402.1|75234_77454_+	ATP-dependent RecD-like DNA helicase	NA	A0A0H3UZA5	Geobacillus_virus	32.4	8.7e-71
>prophage 5
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	87253	91050	4190038		Emiliania_huxleyi_virus(50.0%)	2	NA	NA
WP_009887981.1|87253_89929_+	preprotein translocase subunit SecA	NA	V5LQX0	Emiliania_huxleyi_virus	61.4	7.7e-05
WP_177451831.1|89943_91050_+	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	53.4	2.1e-09
>prophage 6
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	98704	99721	4190038	tRNA	Moraxella_phage(100.0%)	1	NA	NA
WP_009887997.1|98704_99721_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	44.1	8.0e-72
>prophage 7
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	109057	111816	4190038		Clostridioides_phage(50.0%)	2	NA	NA
WP_009888005.1|109057_109771_+	response regulator transcription factor	NA	A0A2R2ZGH8	Clostridioides_phage	35.5	7.7e-29
WP_009888006.1|110043_111816_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.9	1.6e-14
>prophage 8
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	123427	125341	4190038		Tupanvirus(100.0%)	1	NA	NA
WP_003434478.1|123427_125341_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	32.4	2.6e-63
>prophage 9
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	132361	133549	4190038		Orpheovirus(100.0%)	1	NA	NA
WP_009892577.1|132361_133549_-	class I SAM-dependent methyltransferase	NA	A0A2I2L5L3	Orpheovirus	33.5	2.1e-47
>prophage 10
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	139279	143813	4190038		Clostridium_phage(33.33%)	5	NA	NA
WP_003434503.1|139279_140302_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	55.8	4.3e-33
WP_003434504.1|140597_141518_+	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	42.5	7.1e-59
WP_003434506.1|141556_142249_+	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA	NA
WP_003434510.1|142241_143144_+	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003420885.1|143228_143813_+	orotate phosphoribosyltransferase	NA	Q58MW1	Prochlorococcus_phage	28.1	2.2e-05
>prophage 11
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	149984	156116	4190038		uncultured_virus(50.0%)	6	NA	NA
WP_003420907.1|149984_150269_+	co-chaperone GroES	NA	A0A221S4A8	uncultured_virus	42.6	1.4e-13
WP_009888028.1|150301_151930_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	55.7	7.6e-157
WP_003435015.1|152191_152932_+	nickel pincer cofactor biosynthesis protein LarB	NA	A0A288TYA6	Enterococcus_phage	44.8	4.0e-20
WP_003435017.1|153015_153750_+	nickel pincer cofactor biosynthesis protein LarC	NA	NA	NA	NA	NA
WP_009892579.1|153779_154199_+	DUF111 family protein	NA	NA	NA	NA	NA
WP_009888031.1|154580_156116_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.7	1.2e-23
>prophage 12
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	161028	164457	4190038		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_009888036.1|161028_164457_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	37.5	2.4e-176
>prophage 13
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	174603	190789	4190038		Synechococcus_phage(23.08%)	14	NA	NA
WP_009888043.1|174603_175116_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.1	2.3e-83
WP_003425290.1|175565_176042_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
WP_003420966.1|176047_176746_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
WP_003425288.1|176757_178125_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
WP_003425286.1|178118_179195_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
WP_003436064.1|179188_179782_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
WP_009892582.1|179774_181307_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
WP_009888045.1|181317_182568_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_009888046.1|182592_186399_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.1	3.0e-31
WP_009888047.1|186604_187477_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	3.8e-14
WP_009888048.1|187585_188467_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	61.9	8.2e-97
WP_009888049.1|188503_189061_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.0	1.3e-47
WP_009888050.1|189098_190082_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.9	9.2e-81
WP_009888051.1|190120_190789_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	47.7	4.1e-24
>prophage 14
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	209055	210147	4190038		Moumouvirus(100.0%)	1	NA	NA
WP_009888068.1|209055_210147_+	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2P1ELT3	Moumouvirus	32.9	6.2e-38
>prophage 15
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	229361	230063	4190038		Bacillus_phage(100.0%)	1	NA	NA
WP_009888099.1|229361_230063_+	FliA/WhiG family RNA polymerase sigma factor	NA	A0A0Y0AU18	Bacillus_phage	25.6	2.1e-07
>prophage 16
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	235098	237036	4190038		Catovirus(100.0%)	1	NA	NA
WP_009888112.1|235098_237036_+	molecular chaperone HtpG	NA	A0A1V0SAD6	Catovirus	31.9	1.0e-59
>prophage 17
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	253315	255532	4190038		Clostridium_phage(50.0%)	3	NA	NA
WP_009888142.1|253315_254410_+	helix-turn-helix transcriptional regulator	NA	A0A090D830	Clostridium_phage	33.7	1.2e-07
WP_009888145.1|254414_254615_+	PLDc N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_009888147.1|254614_255532_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	36.8	1.3e-31
>prophage 18
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	262495	264007	4190038		Staphylococcus_phage(100.0%)	1	NA	NA
WP_003435916.1|262495_264007_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	2.2e-17
>prophage 19
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	277824	280600	4190038		Streptococcus_phage(100.0%)	2	NA	NA
WP_003437587.1|277824_278190_+	helix-turn-helix domain-containing protein	NA	E4ZFI8	Streptococcus_phage	40.4	7.2e-15
WP_009888174.1|278212_280600_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	34.6	1.5e-116
>prophage 20
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	288891	291598	4190038		Staphylococcus_phage(50.0%)	3	NA	NA
WP_009892604.1|288891_289815_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	44.4	7.4e-40
WP_009888178.1|289971_290895_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_009888179.1|290896_291598_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.0	1.1e-32
>prophage 21
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	296955	302980	4190038		Staphylococcus_phage(33.33%)	5	NA	NA
WP_009888185.1|296955_297774_+	energy-coupling factor ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.9	1.0e-16
WP_009888186.1|298028_300293_+	DUF3553 domain-containing protein	NA	A7KV33	Bacillus_phage	44.5	6.7e-143
WP_009888187.1|300309_301608_+	M18 family aminopeptidase	NA	NA	NA	NA	NA
WP_009888188.1|301638_302391_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003425966.1|302455_302980_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	45.6	4.2e-24
>prophage 22
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	310838	311510	4190038		Planktothrix_phage(100.0%)	1	NA	NA
WP_009888194.1|310838_311510_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.2	1.4e-35
>prophage 23
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	315268	316006	4190038		Clostridioides_phage(100.0%)	1	NA	NA
WP_009888197.1|315268_316006_+	response regulator transcription factor	NA	A0A2R2ZGH8	Clostridioides_phage	26.8	2.3e-12
>prophage 24
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	339938	340937	4190038		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_003431407.1|339938_340937_-	D-2-hydroxyacid dehydrogenase	NA	M1I4S0	Paramecium_bursaria_Chlorella_virus	34.8	3.7e-45
>prophage 25
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	353759	362176	4190038	transposase	Paenibacillus_phage(33.33%)	8	NA	NA
WP_012815995.1|353759_354878_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.4	6.9e-109
WP_012815996.1|355541_356903_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	34.4	6.8e-58
WP_009888267.1|357226_357382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888268.1|357425_358460_+	YHYH domain-containing protein	NA	NA	NA	NA	NA
WP_003426228.1|358546_358750_+	DUF4236 domain-containing protein	NA	A0A0A8WIL0	Clostridium_phage	74.1	1.5e-14
WP_009888269.1|358920_360081_+	cell wall-binding protein Cwp27	NA	A0A2R2ZGK6	Clostridioides_phage	47.9	5.0e-70
WP_009892621.1|360611_361511_-|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	60.7	2.7e-79
WP_009892623.1|361504_362176_-	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	43.0	1.4e-43
>prophage 26
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	376507	385286	4190038		Streptococcus_phage(33.33%)	6	NA	NA
WP_009888278.1|376507_377368_+	helix-turn-helix transcriptional regulator	NA	D0R0F8	Streptococcus_phage	32.1	2.9e-06
WP_009888279.1|377625_379740_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_009892632.1|380001_382245_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	34.6	4.7e-141
WP_009888280.1|382576_383293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888281.1|383320_384259_+	CDD family class D beta-lactamase	NA	NA	NA	NA	NA
WP_009888282.1|384602_385286_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.2	7.1e-32
>prophage 27
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	389304	389967	4190038		Bacillus_phage(100.0%)	1	NA	NA
WP_009888287.1|389304_389967_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.9	4.3e-26
>prophage 28
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	402157	402544	4190038		Clostridium_phage(100.0%)	1	NA	NA
WP_003417583.1|402157_402544_-	BlaI/MecI/CopY family transcriptional regulator	NA	X5JAW5	Clostridium_phage	31.7	3.7e-09
>prophage 29
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	407106	414920	4190038		Bacillus_phage(50.0%)	7	NA	NA
WP_009892642.1|407106_407811_+	lantibiotic protection ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.6	6.2e-55
WP_009888312.1|407807_408578_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
WP_003434743.1|408574_409351_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
WP_003434748.1|409405_410098_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.4	4.1e-27
WP_009892645.1|410116_411541_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	31.6	4.8e-30
WP_009892647.1|411780_414249_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_009888313.1|414251_414920_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	2.3e-35
>prophage 30
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	418592	422383	4190038		Acanthocystis_turfacea_Chlorella_virus(50.0%)	4	NA	NA
WP_009888316.1|418592_419420_-	carbon-nitrogen hydrolase family protein	NA	M1I268	Acanthocystis_turfacea_Chlorella_virus	29.3	1.4e-21
WP_003417824.1|419801_420122_+	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA	NA
WP_003426355.1|420254_420935_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
WP_009888318.1|421330_422383_+	galactitol-1-phosphate 5-dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	31.2	2.3e-13
>prophage 31
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	425466	427501	4190038		Bacillus_phage(100.0%)	2	NA	NA
WP_009888321.1|425466_426114_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	38.1	1.2e-36
WP_009888322.1|426106_427501_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	26.2	4.1e-10
>prophage 32
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	431854	433099	4190038		Erythrobacter_phage(100.0%)	1	NA	NA
WP_012816006.1|431854_433099_-	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	31.1	1.8e-09
>prophage 33
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	439612	446181	4190038		Hokovirus(50.0%)	4	NA	NA
WP_003439079.1|439612_441220_+	DUF4118 domain-containing protein	NA	A0A1V0SGX0	Hokovirus	26.8	4.6e-13
WP_003439080.1|441210_441915_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_009888326.1|442206_442359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009892660.1|443082_446181_+	bifunctional diguanylate cyclase/phosphodiesterase	NA	G3MA91	Bacillus_virus	28.8	2.3e-08
>prophage 34
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	455750	462990	4190038		Streptococcus_phage(25.0%)	8	NA	NA
WP_003439096.1|455750_456662_+	YafY family transcriptional regulator	NA	A0A1B0RXM1	Streptococcus_phage	33.5	5.6e-16
WP_009888330.1|456836_457334_+	effector binding domain-containing protein	NA	NA	NA	NA	NA
WP_003425081.1|458077_458440_+	response regulator	NA	A0A220YL79	Alteromonas_virus	29.2	4.6e-06
WP_032506523.1|458505_459123_+	chemotaxis protein CheC	NA	NA	NA	NA	NA
WP_003425085.1|459119_459605_+	chemotaxis protein CheD	NA	NA	NA	NA	NA
WP_009888332.1|459647_460166_+	purine-binding chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_009892662.1|460301_461261_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	39.5	1.4e-25
WP_009888334.1|461286_462990_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	40.6	1.5e-09
>prophage 35
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	468312	469302	4190038		Klosneuvirus(100.0%)	1	NA	NA
WP_009888338.1|468312_469302_+	ornithine cyclodeaminase family protein	NA	A0A1V0SL93	Klosneuvirus	30.4	5.5e-17
>prophage 36
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	476146	477418	4190038		Bacillus_phage(100.0%)	1	NA	NA
WP_009888343.1|476146_477418_-	spore cortex-lytic protein SleC	NA	A0A127AWA8	Bacillus_phage	42.0	8.1e-05
>prophage 37
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	486286	487123	4190038		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_009888348.1|486286_487123_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.5	2.1e-30
>prophage 38
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	491050	493288	4190038		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_009888352.1|491050_493288_+	ATP-binding protein	NA	A0A2H4UU76	Bodo_saltans_virus	32.7	9.9e-06
>prophage 39
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	502399	507373	4190038	tRNA,transposase	Tupanvirus(50.0%)	2	NA	NA
WP_009888359.1|502399_504319_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
WP_012816012.1|506254_507373_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.2	2.2e-110
>prophage 40
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	510779	512120	4190038		Clostridium_phage(100.0%)	1	NA	NA
WP_009888366.1|510779_512120_+	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	38.8	2.4e-79
>prophage 41
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	518420	520988	4190038		Hokovirus(100.0%)	1	NA	NA
WP_009888372.1|518420_520988_+	pyruvate, phosphate dikinase	NA	A0A1V0SGR7	Hokovirus	39.6	4.1e-48
>prophage 42
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	533127	542730	4190038	coat	Streptococcus_phage(100.0%)	10	NA	NA
WP_009888383.1|533127_535227_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.8	2.2e-68
WP_009892678.1|535269_535665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438914.1|536725_536914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888386.1|537098_537539_-	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_009888387.1|537874_539188_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	41.0	1.6e-93
WP_009888388.1|539205_539742_+	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	70.3	4.2e-64
WP_009888389.1|540260_540482_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
WP_009888390.1|540481_540745_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
WP_003418062.1|540806_541379_+	manganese catalase family protein	NA	NA	NA	NA	NA
WP_009888391.1|542196_542730_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	50.0	7.0e-35
>prophage 43
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	547340	548450	4190038	transposase	Geobacillus_virus(100.0%)	1	NA	NA
WP_009888399.1|547340_548450_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	54.3	6.6e-112
>prophage 44
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	552362	553700	4190038		Clostridium_phage(100.0%)	1	NA	NA
WP_009899706.1|552362_553700_-	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	22.9	3.0e-10
>prophage 45
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	557564	558317	4190038		Planktothrix_phage(100.0%)	1	NA	NA
WP_009888408.1|557564_558317_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.3	6.9e-28
>prophage 46
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	566036	569282	4190038		Clostridioides_phage(50.0%)	2	NA	NA
WP_009888414.1|566036_567275_+	conserved phage C-terminal domain-containing protein	NA	A0A1V0E018	Clostridioides_phage	33.6	7.4e-11
WP_003437698.1|567980_569282_+	AAA family ATPase	NA	A0A218KST2	Xenohaliotis_phage	29.3	1.1e-20
>prophage 47
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	572684	574370	4190038		Bacillus_phage(100.0%)	1	NA	NA
WP_009888417.1|572684_574370_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.1	5.0e-26
>prophage 48
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	588350	590267	4190038		Bacillus_phage(50.0%)	2	NA	NA
WP_009892713.1|588350_589268_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	29.3	4.6e-18
WP_009888426.1|589340_590267_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	45.4	2.3e-41
>prophage 49
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	605023	608123	4190038		Streptococcus_phage(50.0%)	3	NA	NA
WP_009888437.1|605023_606280_+	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	51.3	7.1e-94
WP_009888439.1|606342_607536_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_009888440.1|607742_608123_+	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WHZ2	Clostridium_phage	63.4	2.0e-36
>prophage 50
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	617138	617879	4190038	holin	Clostridium_phage(100.0%)	2	NA	NA
WP_003426839.1|617138_617639_+|holin	holin-like glycosylating toxin export protein TcdE	holin	A0A090D848	Clostridium_phage	83.5	2.3e-56
WP_003418175.1|617717_617879_+	hypothetical protein	NA	A0A0A8WI59	Clostridium_phage	73.2	1.8e-10
>prophage 51
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	626833	627394	4190038		Lactobacillus_phage(100.0%)	1	NA	NA
WP_009888448.1|626833_627394_-	hypothetical protein	NA	O64371	Lactobacillus_phage	56.6	2.5e-22
>prophage 52
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	631205	636427	4190038		Staphylococcus_phage(25.0%)	4	NA	NA
WP_009888458.1|631205_632120_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	44.2	1.0e-41
WP_009888460.1|632290_632998_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.4	4.2e-35
WP_009892732.1|633042_634449_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	24.2	1.9e-07
WP_003426867.1|636037_636427_+	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	47.2	2.1e-28
>prophage 53
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	655509	658299	4190038		Ostreococcus_tauri_virus(50.0%)	2	NA	NA
WP_003439135.1|655509_656913_-	AAA family ATPase	NA	H8ZJI5	Ostreococcus_tauri_virus	44.7	6.2e-99
WP_011860916.1|657789_658299_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	35.5	5.9e-15
>prophage 54
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	675543	676563	4190038	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_003436795.1|675543_676563_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	36.4	4.3e-33
>prophage 55
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	681104	695951	4190038	tRNA	Phage_TP(25.0%)	9	NA	NA
WP_100882472.1|681104_683741_+	U32 family peptidase	NA	Q6DW11	Phage_TP	30.2	2.2e-28
WP_003436878.1|683844_684423_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_009888511.1|684456_684933_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_009888513.1|685451_686273_+	nitroreductase family protein	NA	NA	NA	NA	NA
WP_012816036.1|686495_689009_+	transporter substrate-binding domain-containing protein	NA	G3MA91	Bacillus_virus	27.9	4.1e-16
WP_003436882.1|689212_690664_-	aminoacyl-histidine dipeptidase	NA	NA	NA	NA	NA
WP_009892760.1|690980_693359_+	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	31.9	4.6e-09
WP_009888519.1|693426_693840_+	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_003436885.1|694250_695951_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	38.4	3.4e-99
>prophage 56
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	710533	711919	4190038		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_003418341.1|710533_711919_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	1.9e-47
>prophage 57
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	738152	748300	4190038		Pseudomonas_phage(25.0%)	6	NA	NA
WP_009892770.1|738152_741029_+	EAL domain-containing protein	NA	A0A2K8I9Y5	Pseudomonas_phage	42.7	5.7e-06
WP_009888557.1|741105_743172_+	ATP-dependent helicase	NA	A0A068EQC7	Bacillus_phage	31.7	2.4e-83
WP_003432207.1|744199_745015_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_009888558.1|745042_745720_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003432205.1|745778_746501_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.2	3.9e-28
WP_009888559.1|747148_748300_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	30.5	4.1e-32
>prophage 58
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	754568	760752	4190038		Tetraselmis_virus(66.67%)	4	NA	NA
WP_003437451.1|754568_755303_-	pyruvate formate lyase-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	30.5	4.6e-29
WP_009888568.1|755462_757694_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	44.7	1.0e-183
WP_012816042.1|757986_759048_+	calcium/sodium antiporter	NA	NA	NA	NA	NA
WP_003437464.1|759138_760752_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	38.3	2.7e-69
>prophage 59
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	767335	768454	4190038	transposase	Geobacillus_virus(100.0%)	1	NA	NA
WP_012816044.1|767335_768454_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.2	4.8e-110
>prophage 60
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	771879	772644	4190038		Bacillus_phage(100.0%)	1	NA	NA
WP_003418417.1|771879_772644_+	RNA polymerase sporulation sigma factor SigF	NA	A0A0A0RV91	Bacillus_phage	43.4	5.7e-46
>prophage 61
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	787570	789121	4190038		Klosneuvirus(100.0%)	1	NA	NA
WP_009888583.1|787570_789121_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	32.0	7.7e-58
>prophage 62
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	793175	798739	4190038		Streptococcus_phage(33.33%)	7	NA	NA
WP_009888588.1|793175_793820_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	40.1	2.0e-31
WP_003437529.1|793905_794283_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_003437532.1|794282_794669_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_009888593.1|794847_795603_+	NAD(+) synthase	NA	E3SLH5	Synechococcus_phage	34.5	1.1e-28
WP_003437537.1|795685_796405_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003437541.1|796572_797577_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_009892786.1|797842_798739_+	hydroxymethylglutaryl-CoA lyase	NA	A0A1V0SKU2	Klosneuvirus	33.8	2.9e-33
>prophage 63
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	823528	826224	4190038		Bacillus_phage(33.33%)	3	NA	NA
WP_009888625.1|823528_824221_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.2	8.5e-33
WP_012816055.1|824217_825153_+	HAMP domain-containing histidine kinase	NA	A0A2K9L114	Tupanvirus	25.0	1.2e-10
WP_009892796.1|825300_826224_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	42.7	6.0e-42
>prophage 64
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	834369	835479	4190038		Chrysochromulina_ericina_virus(100.0%)	1	NA	NA
WP_009888643.1|834369_835479_-	DEAD/DEAH box helicase	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	38.5	3.2e-58
>prophage 65
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	841526	848955	4190038	protease	Clostridioides_phage(66.67%)	8	NA	NA
WP_009888648.1|841526_842048_+	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	37.9	8.7e-22
WP_004453624.1|842236_842548_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_009888649.1|842575_843262_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_009888650.1|843493_844378_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_009888651.1|844476_845652_+	phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	S4VT61	Pandoravirus	24.1	2.1e-15
WP_009888652.1|845779_846634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888653.1|846677_847913_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_004454223.1|848013_848955_+	cell wall-binding protein Cwp25	NA	A0A2R2ZGK6	Clostridioides_phage	41.8	7.7e-61
>prophage 66
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	859953	860979	4190038		Planktothrix_phage(100.0%)	1	NA	NA
WP_009888671.1|859953_860979_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	26.5	9.7e-17
>prophage 67
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	869685	870546	4190038		Tupanvirus(100.0%)	1	NA	NA
WP_012816064.1|869685_870546_+	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	35.9	8.7e-35
>prophage 68
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	875310	882608	4190038		Indivirus(66.67%)	7	NA	NA
WP_009888694.1|875310_876387_+	sulfate/molybdate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.3	1.1e-18
WP_009888695.1|876392_876950_+	sugar O-acetyltransferase	NA	NA	NA	NA	NA
WP_009888696.1|877113_878136_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_009892814.1|878266_879022_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	29.8	3.0e-15
WP_009892816.1|879022_879910_-	ABC transporter	NA	NA	NA	NA	NA
WP_009892818.1|880718_881756_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_009888699.1|881852_882608_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	29.5	2.2e-13
>prophage 69
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	886619	889532	4190038	transposase	Geobacillus_virus(50.0%)	3	NA	NA
WP_012816067.1|886619_887738_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	2.8e-110
WP_003437174.1|888021_888468_+	NfeD family protein	NA	NA	NA	NA	NA
WP_003437173.1|888488_889532_+	SPFH/Band 7/PHB domain protein	NA	A0A2P1EMF1	Moumouvirus	33.3	2.1e-19
>prophage 70
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	901467	904010	4190038		Cyanophage(33.33%)	4	NA	NA
WP_003418655.1|901467_901881_+	adenosylmethionine decarboxylase	NA	A0A1D7SEZ2	Cyanophage	45.7	1.1e-16
WP_009888722.1|901910_902762_+	polyamine aminopropyltransferase	NA	A0A1C9C533	Heterosigma_akashiwo_virus	28.3	1.3e-19
WP_009888724.1|902751_903630_+	agmatinase	NA	NA	NA	NA	NA
WP_003418660.1|903809_904010_-	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	66.7	3.8e-18
>prophage 71
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	908843	909962	4190038	transposase	Geobacillus_virus(100.0%)	1	NA	NA
WP_012816072.1|908843_909962_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	3.7e-110
>prophage 72
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	915045	916182	4190038		Bacillus_virus(100.0%)	1	NA	NA
WP_003437132.1|915045_916182_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.5	8.0e-28
>prophage 73
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	927823	928270	4190038		Clostridioides_phage(100.0%)	1	NA	NA
WP_009892857.1|927823_928270_+	hypothetical protein	NA	A0A1V0E019	Clostridioides_phage	37.7	2.9e-10
>prophage 74
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	935913	947166	4190038		Bacillus_virus(50.0%)	7	NA	NA
WP_003437082.1|935913_936855_+	D-3-phosphoglycerate dehydrogenase	NA	M1I539	Acanthocystis_turfacea_Chlorella_virus	30.3	3.0e-28
WP_009888751.1|936886_938137_+	DUF1015 domain-containing protein	NA	NA	NA	NA	NA
WP_009904117.1|938954_942503_+	diguanylate cyclase	NA	G3MA91	Bacillus_virus	35.3	6.8e-17
WP_009888753.1|942687_944622_+	YgiQ family radical SAM protein	NA	M1QSD9	Pseudomonas_phage	41.3	6.3e-49
WP_009888754.1|944727_945723_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_009888755.1|945694_946480_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003437066.1|946467_947166_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.8	3.6e-23
>prophage 75
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	951567	954258	4190038		Bacillus_phage(66.67%)	3	NA	NA
WP_003418728.1|951567_952251_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.7	2.2e-25
WP_009888761.1|952261_953503_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	28.1	6.0e-21
WP_009888764.1|953574_954258_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.6	2.5e-37
>prophage 76
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	962440	963928	4190038		Bacillus_phage(100.0%)	1	NA	NA
WP_009888772.1|962440_963928_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	29.1	3.8e-22
>prophage 77
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	967338	970965	4190038		Bacillus_phage(100.0%)	2	NA	NA
WP_009888775.1|967338_969066_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.5	1.0e-50
WP_009892865.1|969102_970965_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.8	5.3e-53
>prophage 78
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	976837	977881	4190038		Mycoplasma_phage(100.0%)	1	NA	NA
WP_003437017.1|976837_977881_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	41.7	2.4e-39
>prophage 79
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	983544	984801	4190038		Catovirus(100.0%)	1	NA	NA
WP_009888787.1|983544_984801_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.2	5.0e-07
>prophage 80
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	988080	990257	4190038		Catovirus(50.0%)	2	NA	NA
WP_009888791.1|988080_989205_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	27.0	8.4e-22
WP_009888794.1|989282_990257_+	glucosaminidase domain-containing protein	NA	A0A0A7RUS8	Clostridium_phage	50.0	1.2e-35
>prophage 81
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	995787	997806	4190038		Bacillus_phage(100.0%)	1	NA	NA
WP_021401204.1|995787_997806_+	N-acetylmuramoyl-L-alanine amidase	NA	J9PV86	Bacillus_phage	35.6	3.9e-17
>prophage 82
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1009079	1017678	4190038		Bacillus_phage(50.0%)	3	NA	NA
WP_009892874.1|1009079_1012907_+	helicase-exonuclease AddAB subunit AddA	NA	S5M596	Bacillus_phage	23.3	3.5e-11
WP_009888859.1|1012952_1014164_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_009888860.1|1014150_1017678_+	AAA family ATPase	NA	G3MAB6	Bacillus_virus	26.8	4.7e-10
>prophage 83
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1024785	1025658	4190038		Staphylococcus_phage(100.0%)	1	NA	NA
WP_009888863.1|1024785_1025658_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.8	3.0e-19
>prophage 84
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1035317	1036693	4190038		Clostridium_phage(50.0%)	2	NA	NA
WP_003437972.1|1035317_1036322_+	nucleoid-associated protein	NA	J9QE81	Clostridium_phage	79.6	2.3e-151
WP_003418905.1|1036465_1036693_-	acyl carrier protein	NA	A0A2C9CX86	Yersinia_phage	45.5	2.6e-07
>prophage 85
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1052624	1053530	4190038		Lactobacillus_phage(100.0%)	1	NA	NA
WP_009892888.1|1052624_1053530_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.0	6.4e-12
>prophage 86
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1057223	1058924	4190038		Bacillus_phage(100.0%)	1	NA	NA
WP_003438014.1|1057223_1058924_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	33.4	2.3e-63
>prophage 87
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1063557	1070082	4190038		Clostridioides_phage(25.0%)	5	NA	NA
WP_009888891.1|1063557_1064271_+	two-component system response regulator RgbR	NA	A0A2R2ZGH8	Clostridioides_phage	37.7	1.2e-29
WP_009892897.1|1064264_1065644_+	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	30.0	1.2e-33
WP_009892899.1|1065884_1066574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888894.1|1066792_1069165_+	formate C-acetyltransferase/glycerol dehydratase family glycyl radical enzyme	NA	A0A1S6UAD4	Serratia_phage	43.4	8.0e-06
WP_009888895.1|1069179_1070082_+	glycyl-radical enzyme activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	30.3	1.2e-13
>prophage 88
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1077094	1078213	4190038	transposase	Geobacillus_virus(100.0%)	1	NA	NA
WP_012816091.1|1077094_1078213_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	2.2e-110
>prophage 89
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1081666	1088658	4190038		Bacillus_phage(66.67%)	4	NA	NA
WP_009888906.1|1081666_1083076_-	MBOAT family protein	NA	A0A125RNP0	Pseudomonas_phage	34.1	5.4e-66
WP_009888908.1|1084851_1087500_+	DNA polymerase I	NA	A0A142F1Q9	Bacillus_phage	38.2	4.0e-54
WP_009892906.1|1087508_1088111_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003438043.1|1088103_1088658_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXN2	Bacillus_phage	36.2	3.1e-09
>prophage 90
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1092188	1093463	4190038		Clostridium_phage(100.0%)	1	NA	NA
WP_009888911.1|1092188_1093463_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	44.6	2.9e-26
>prophage 91
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1123958	1124525	4190038	integrase	Bacillus_phage(100.0%)	1	1122314:1122328	1126177:1126191
1122314:1122328	attL	TATACTATTAAACAT	NA	NA	NA	NA
WP_003419093.1|1123958_1124525_-|integrase	tyrosine-type recombinase/integrase	integrase	H0USV4	Bacillus_phage	35.2	1.5e-11
WP_003419093.1|1123958_1124525_-|integrase	tyrosine-type recombinase/integrase	integrase	H0USV4	Bacillus_phage	35.2	1.5e-11
1126177:1126191	attR	ATGTTTAATAGTATA	NA	NA	NA	NA
>prophage 92
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1130331	1131723	4190038		Tupanvirus(100.0%)	1	NA	NA
WP_003438093.1|1130331_1131723_+	FAD-binding oxidoreductase	NA	A0A2K9L3G7	Tupanvirus	28.1	1.2e-06
>prophage 93
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1140554	1144793	4190038		Trichoplusia_ni_ascovirus(33.33%)	4	NA	NA
WP_009888925.1|1140554_1141304_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.1	7.6e-19
WP_003419132.1|1141357_1141582_+	acyl carrier protein	NA	A0A2C9CY51	Yersinia_phage	44.4	1.6e-09
WP_003438103.1|1141610_1142849_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_009892922.1|1143074_1144793_+	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	31.2	3.6e-16
>prophage 94
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1160012	1162325	4190038		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_009888950.1|1160012_1161218_+	exodeoxyribonuclease VII large subunit	NA	A0A2H4UVM9	Bodo_saltans_virus	34.3	9.3e-51
WP_003428410.1|1161219_1161435_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_009888951.1|1161437_1162325_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	27.0	1.1e-05
>prophage 95
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1170859	1171684	4190038		Bacillus_phage(100.0%)	1	NA	NA
WP_003424711.1|1170859_1171684_+	sporulation transcription factor Spo0A	NA	W8CYM9	Bacillus_phage	31.7	3.9e-08
>prophage 96
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1177953	1193937	4190038	transposase,integrase	Paenibacillus_phage(25.0%)	14	1177148:1177164	1186581:1186597
1177148:1177164	attL	AGTTTTTAGATGTCTAT	NA	NA	NA	NA
WP_003428375.1|1177953_1178868_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2L1IV36	Escherichia_phage	27.4	8.1e-07
WP_003438158.1|1178909_1180082_+	phosphopentomutase	NA	NA	NA	NA	NA
WP_009888977.1|1180128_1180941_+	purine-nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	41.3	2.7e-62
WP_009892935.1|1181144_1182470_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	55.8	7.6e-131
WP_003438164.1|1182682_1183762_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_009888982.1|1183933_1184608_+	O-methyltransferase	NA	NA	NA	NA	NA
WP_009888984.1|1184594_1185842_+	U32 family peptidase	NA	Q6DW11	Phage_TP	37.9	4.3e-59
WP_003438168.1|1185913_1187578_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
1186581:1186597	attR	ATAGACATCTAAAAACT	NA	NA	NA	NA
WP_003419254.1|1187674_1187959_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_009888987.1|1187981_1189499_-	recombinase family protein	NA	I3VYZ3	Thermoanaerobacterium_phage	49.7	1.2e-127
WP_009888988.1|1189623_1190445_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_009888990.1|1190635_1192063_+	cell wall-binding protein Cwp26	NA	A0A2R2ZGK6	Clostridioides_phage	44.8	1.5e-76
WP_009888992.1|1192372_1193044_+	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	43.0	1.0e-43
WP_009888993.1|1193037_1193937_+|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	61.5	4.9e-81
>prophage 97
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1198875	1199259	4190038		Clostridioides_phage(100.0%)	1	NA	NA
WP_003433385.1|1198875_1199259_-	hypothetical protein	NA	A0A1V0E007	Clostridioides_phage	66.1	1.7e-38
>prophage 98
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1204056	1205158	4190038		Clostridium_phage(50.0%)	2	NA	NA
WP_009889013.1|1204056_1204251_-	hypothetical protein	NA	A0A0A8WI84	Clostridium_phage	39.6	4.7e-05
WP_003438191.1|1204765_1205158_-	sigma-70 family RNA polymerase sigma factor	NA	S6ANS0	Bacillus_phage	38.6	5.7e-10
>prophage 99
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1209319	1210030	4190038		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_003428341.1|1209319_1210030_+	ribonuclease III	NA	L7RCJ8	Acanthamoeba_polyphaga_moumouvirus	33.9	4.2e-27
>prophage 100
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1226199	1229224	4190038		Clostridioides_phage(50.0%)	2	NA	NA
WP_009889037.1|1226199_1228389_+	adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	NA	A0A2R2ZGN9	Clostridioides_phage	64.2	1.2e-210
WP_003438239.1|1228456_1229224_+	ribonuclease HII	NA	A0A0N9QYD4	Chrysochromulina_ericina_virus	38.6	1.5e-22
>prophage 101
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1233704	1234640	4190038		Staphylococcus_phage(100.0%)	1	NA	NA
WP_009889046.1|1233704_1234640_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.2	4.4e-24
>prophage 102
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1239937	1251864	4190038	tRNA	Catovirus(20.0%)	9	NA	NA
WP_009892959.1|1239937_1242025_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	36.4	2.5e-104
WP_003438268.1|1242189_1242975_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_009889058.1|1243081_1244347_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	43.4	8.7e-84
WP_009889060.1|1244377_1245148_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003419409.1|1245256_1245703_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_009892962.1|1245720_1246914_+	cysteine desulfurase NifS	NA	H7BUW1	unidentified_phage	40.2	5.6e-40
WP_003438275.1|1246967_1247408_+	Fe-S cluster assembly scaffold protein NifU	NA	A0A2H4N7M4	Lake_Baikal_phage	53.5	2.3e-31
WP_003438277.1|1247696_1248776_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_009889064.1|1249224_1251864_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L3D8	Tupanvirus	33.8	1.7e-65
>prophage 103
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1259269	1260433	4190038		Stx2-converting_phage(100.0%)	1	NA	NA
WP_003428267.1|1259269_1260433_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	29.3	9.9e-34
>prophage 104
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1263567	1354891	4190038	plate,integrase,tail,tRNA,protease,portal	Clostridium_phage(38.24%)	87	1276710:1276728	1319858:1319876
WP_003428258.1|1263567_1264107_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	37.0	1.6e-18
WP_009889085.1|1264268_1264898_+	DUF2953 domain-containing protein	NA	NA	NA	NA	NA
WP_003419458.1|1264851_1265280_+	GerW family sporulation protein	NA	NA	NA	NA	NA
WP_003419459.1|1265527_1265968_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009889091.1|1265983_1267435_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	39.1	1.7e-54
WP_009892970.1|1267525_1268194_-	YwaF family protein	NA	NA	NA	NA	NA
WP_003419462.1|1268462_1268603_+	hypothetical protein	NA	B6SBZ7	Clostridium_virus	53.7	1.5e-05
WP_003428248.1|1268777_1269098_-	MazG-like family protein	NA	NA	NA	NA	NA
WP_003428245.1|1269217_1269955_-	NAD-dependent protein deacylase	NA	S5M4R0	Bacillus_phage	32.9	2.6e-27
WP_009892971.1|1270169_1271993_+	N-acetylglucosaminidase	NA	Q4ZE13	Staphylococcus_virus	33.8	1.0e-21
WP_009892973.1|1272207_1276506_+	PolC-type DNA polymerase III	NA	A0A0A7RWA3	Clostridium_phage	39.5	2.2e-25
WP_003438303.1|1276709_1277171_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
1276710:1276728	attL	ATGAAAAAAAATTTAGAAG	NA	NA	NA	NA
WP_009889093.1|1277200_1278355_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_003419469.1|1278361_1278643_+	YlxR family protein	NA	NA	NA	NA	NA
WP_003419470.1|1278632_1278944_+	ribosomal L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA	NA
WP_003438306.1|1278965_1280906_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	26.6	3.7e-25
WP_009889095.1|1280948_1281329_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_095890265.1|1281309_1282293_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
WP_009889097.1|1282305_1283211_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_009889098.1|1283341_1284271_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_003419491.1|1284374_1284632_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_009889099.1|1284871_1285717_+	DegV family protein	NA	NA	NA	NA	NA
WP_003438316.1|1285841_1287953_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003438319.1|1288218_1288962_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_009889101.1|1289119_1290367_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	35.1	6.6e-52
WP_003419503.1|1290401_1290647_+	YlmC/YmxH family sporulation protein	NA	NA	NA	NA	NA
WP_009889103.1|1290656_1291880_+	aspartate kinase	NA	NA	NA	NA	NA
WP_003428224.1|1291992_1292727_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	NA	NA	NA	NA
WP_009889104.1|1292849_1295261_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
WP_009889105.1|1295263_1296322_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
WP_009892976.1|1296315_1297650_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_009889106.1|1297636_1298179_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003428218.1|1298466_1299513_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
WP_003428216.1|1299688_1301230_+	ribonuclease Y	NA	NA	NA	NA	NA
WP_003438344.1|1301864_1303646_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_009889108.1|1303727_1304258_-	signal peptidase I	NA	NA	NA	NA	NA
WP_009889109.1|1304297_1305122_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_009889110.1|1305378_1306287_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_009889111.1|1306430_1307876_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
WP_003419561.1|1308186_1308639_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009889112.1|1309051_1310629_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_009892977.1|1310787_1311540_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011861180.1|1311678_1313019_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
WP_003438357.1|1313130_1314327_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_009889113.1|1314711_1315662_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_003438367.1|1315822_1316575_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
WP_009889114.1|1316666_1317443_-	exonuclease domain-containing protein	NA	NA	NA	NA	NA
WP_003428202.1|1317757_1319656_+	glutamine synthetase	NA	NA	NA	NA	NA
WP_003428201.1|1319783_1320905_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
1319858:1319876	attR	CTTCTAAATTTTTTTTCAT	NA	NA	NA	NA
WP_009889116.1|1321103_1321436_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012816112.1|1321422_1322481_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_009889118.1|1322473_1323544_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_003428196.1|1323645_1324182_+	lipoprotein	NA	NA	NA	NA	NA
WP_009889121.1|1324298_1325006_+	lantibiotic protection ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.0	3.6e-55
WP_009889122.1|1325007_1325724_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
WP_009889124.1|1325725_1326484_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
WP_009889126.1|1326627_1328016_+	two-component system sensor histidine kinase	NA	NA	NA	NA	NA
WP_003428191.1|1328091_1328913_-	pyridoxamine kinase	NA	NA	NA	NA	NA
WP_021361422.1|1329148_1330318_+	amidase domain-containing protein	NA	NA	NA	NA	NA
WP_003419624.1|1330500_1330701_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
WP_009889129.1|1331121_1331550_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_009889131.1|1331692_1332448_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_003428186.1|1333148_1333655_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
WP_003428185.1|1333736_1334057_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
WP_003419641.1|1334225_1334423_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_009889133.1|1334527_1334968_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	4.6e-32
WP_009889135.1|1335216_1335660_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	7.6e-19
WP_009889137.1|1335664_1336729_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A1V0DZX4	Clostridioides_phage	52.8	2.6e-97
WP_003419646.1|1336742_1337171_+|tail	phage tail tube protein	tail	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
WP_009889139.1|1337284_1337731_+|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
WP_003419648.1|1337757_1337925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889141.1|1337924_1340378_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	61.0	6.1e-17
WP_009889143.1|1340377_1340800_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	70.4	2.2e-52
WP_009889145.1|1341081_1342611_+	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
WP_003438447.1|1342626_1342953_+	DUF2577 family protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
WP_003428161.1|1342952_1343381_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
WP_009889148.1|1343373_1344426_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFP3	Clostridium_phage	71.3	9.3e-140
WP_009889149.1|1344422_1345121_+	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	56.9	3.3e-48
WP_009889153.1|1345121_1346108_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
WP_009892995.1|1346129_1351307_+	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	28.3	8.2e-88
WP_009889155.1|1351323_1351677_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	4.2e-12
WP_003419670.1|1351939_1352200_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
WP_003419674.1|1352424_1352880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438466.1|1353107_1353527_-	helix-turn-helix transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
WP_003428146.1|1353825_1354035_+	helix-turn-helix transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
WP_009889160.1|1354066_1354276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889162.1|1354492_1354891_-	helix-turn-helix domain-containing protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
>prophage 105
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1366356	1367424	4190038		Oenococcus_phage(100.0%)	1	NA	NA
WP_009889169.1|1366356_1367424_+	dipeptide epimerase	NA	Q6A202	Oenococcus_phage	27.6	2.7e-17
>prophage 106
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1380218	1388304	4190038		Tupanvirus(66.67%)	5	NA	NA
WP_009889194.1|1380218_1380950_-	glycerophosphodiester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	33.8	3.8e-23
WP_009893017.1|1381280_1383470_+	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	28.2	1.3e-55
WP_009893019.1|1383880_1385809_+	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
WP_009889198.1|1385795_1386143_+	PqqD family protein	NA	NA	NA	NA	NA
WP_009889201.1|1386384_1388304_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.3	2.4e-56
>prophage 107
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1391823	1393080	4190038		Pseudomonas_phage(100.0%)	1	NA	NA
WP_003438532.1|1391823_1393080_+	competence/damage-inducible protein A	NA	B5TK85	Pseudomonas_phage	34.7	1.1e-14
>prophage 108
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1397777	1398713	4190038		Staphylococcus_phage(100.0%)	1	NA	NA
WP_009893027.1|1397777_1398713_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	61.6	3.5e-45
>prophage 109
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1403299	1408083	4190038	transposase	Bacillus_phage(66.67%)	3	NA	NA
WP_009889219.1|1403299_1403656_+|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	61.9	9.4e-36
WP_009889221.1|1405264_1406998_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	33.9	3.2e-12
WP_009889222.1|1407237_1408083_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	29.4	1.9e-10
>prophage 110
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1413179	1413854	4190038		Bacillus_virus(100.0%)	1	NA	NA
WP_100882477.1|1413179_1413854_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	46.7	1.7e-17
>prophage 111
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1419970	1426093	4190038		Bacillus_phage(33.33%)	3	NA	NA
WP_009893051.1|1419970_1423090_+	DEAD/DEAH box helicase family protein	NA	A0A127AW80	Bacillus_phage	24.1	9.5e-31
WP_009889235.1|1423107_1423707_+	viroplasmin family protein	NA	A0A2H4JH24	uncultured_Caudovirales_phage	39.9	8.7e-34
WP_003438605.1|1423963_1426093_-	peroxiredoxin	NA	A0A2K9KZQ8	Tupanvirus	25.4	1.3e-18
>prophage 112
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1433688	1447312	4190038		Pandoravirus(22.22%)	15	NA	NA
WP_003429405.1|1433688_1434555_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	33.3	1.9e-29
WP_009889246.1|1434796_1435606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009893056.1|1435748_1436813_+	peptidase	NA	U5Q1E2	Bacillus_phage	50.8	5.5e-23
WP_009893057.1|1436840_1437560_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_009889249.1|1437583_1438168_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	4.2e-57
WP_009889251.1|1438169_1439519_+	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	41.2	2.9e-37
WP_003438634.1|1439508_1440252_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_009889253.1|1440285_1440987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429416.1|1441012_1441585_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
WP_009893060.1|1441650_1442442_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	28.6	1.8e-23
WP_009889257.1|1442452_1442818_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_009889259.1|1442810_1443317_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_009893063.1|1443297_1444083_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.0e-13
WP_009893065.1|1444337_1446128_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.8	5.6e-52
WP_003429425.1|1446145_1447312_+	RNA polymerase sigma factor RpoD	NA	M4SMP8	Cyanophage	36.8	9.6e-37
>prophage 113
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1454506	1456508	4190038		Bacillus_phage(50.0%)	2	NA	NA
WP_009889280.1|1454506_1455751_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	29.6	3.0e-20
WP_003438655.1|1455830_1456508_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.7	1.2e-31
>prophage 114
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1460725	1463767	4190038		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_009893076.1|1460725_1463767_-	cell wall-binding protein Cwp20	NA	A0A2H4JAN9	uncultured_Caudovirales_phage	25.3	1.8e-10
>prophage 115
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1467031	1470643	4190038		Bacillus_phage(100.0%)	2	NA	NA
WP_009889289.1|1467031_1468807_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.6	3.6e-43
WP_009889291.1|1468819_1470643_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.2	2.9e-40
>prophage 116
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1478156	1478888	4190038		Bacillus_virus(100.0%)	1	NA	NA
WP_009893083.1|1478156_1478888_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.4	4.1e-25
>prophage 117
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1483715	1490823	4190038	transposase	Geobacillus_virus(33.33%)	5	NA	NA
WP_014466366.1|1483715_1484834_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	2.8e-110
WP_009889322.1|1485495_1486461_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	1.1e-33
WP_003434110.1|1486453_1487110_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003434107.1|1487145_1487937_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_009893087.1|1488084_1490823_+	PAS domain-containing sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	24.8	5.4e-22
>prophage 118
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1496142	1497027	4190038		Synechococcus_phage(100.0%)	1	NA	NA
WP_009889336.1|1496142_1497027_+	RNA polymerase sigma factor RpoD/SigA	NA	F4YCU2	Synechococcus_phage	35.0	5.8e-34
>prophage 119
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1500294	1501170	4190038		Staphylococcus_phage(100.0%)	1	NA	NA
WP_100882479.1|1500294_1501170_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.4	1.8e-16
>prophage 120
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1510426	1511254	4190038		Ostreococcus_tauri_virus(100.0%)	1	NA	NA
WP_009889352.1|1510426_1511254_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	E4WLQ5	Ostreococcus_tauri_virus	40.1	8.0e-54
>prophage 121
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1530544	1531219	4190038		Planktothrix_phage(100.0%)	1	NA	NA
WP_009889377.1|1530544_1531219_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	9.8e-34
>prophage 122
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1534557	1535325	4190038		Planktothrix_phage(100.0%)	1	NA	NA
WP_009889379.1|1534557_1535325_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	5.7e-30
>prophage 123
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1545715	1546462	4190038		Planktothrix_phage(100.0%)	1	NA	NA
WP_014466367.1|1545715_1546462_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.3	6.8e-28
>prophage 124
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1554103	1554280	4190038		Clostridium_phage(100.0%)	1	NA	NA
WP_003420092.1|1554103_1554280_-	hypothetical protein	NA	A0A0A8WHZ4	Clostridium_phage	73.2	8.2e-17
>prophage 125
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1560157	1560826	4190038		Klosneuvirus(100.0%)	1	NA	NA
WP_009893118.1|1560157_1560826_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA	A0A1V0SIZ6	Klosneuvirus	30.7	2.6e-18
>prophage 126
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1571497	1628674	4190038	plate,capsid,terminase,integrase,tail,portal,holin	Clostridium_phage(77.19%)	68	1563427:1563442	1574771:1574786
1563427:1563442	attL	TAATATTTCTAATTTA	NA	NA	NA	NA
WP_009888799.1|1571497_1573186_+	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.6	1.1e-49
WP_003429803.1|1573543_1574674_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	99.7	2.9e-216
WP_009888800.1|1574752_1575460_-	HIRAN domain-containing protein	NA	NA	NA	NA	NA
1574771:1574786	attR	TAATATTTCTAATTTA	NA	NA	NA	NA
WP_009888801.1|1575472_1576342_-	HipA domain-containing protein	NA	NA	NA	NA	NA
WP_003429804.1|1576961_1577468_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
WP_009893126.1|1577543_1578092_-	helix-turn-helix domain-containing protein	NA	A0A0A8WJ60	Clostridium_phage	98.4	2.2e-92
WP_009888806.1|1578103_1578445_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	100.0	7.6e-59
WP_009893129.1|1578621_1578825_+	helix-turn-helix domain-containing protein	NA	A0A0A8WHR3	Clostridium_phage	100.0	3.7e-29
WP_009888810.1|1578872_1579682_+	phage antirepressor KilAC domain-containing protein	NA	A0A0A8WIE3	Clostridium_phage	97.4	1.0e-146
WP_009888812.1|1579728_1579938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003433505.1|1579947_1580322_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
WP_009888813.1|1580397_1580595_+	helix-turn-helix transcriptional regulator	NA	A0A0A8WE47	Clostridium_phage	92.3	2.9e-26
WP_009888815.1|1580625_1581018_+	helix-turn-helix domain-containing protein	NA	A0A0A8WHS2	Clostridium_phage	93.0	9.6e-58
WP_003429817.1|1580998_1581148_+	hypothetical protein	NA	A0A0A8WIF8	Clostridium_phage	89.4	4.2e-14
WP_003433513.1|1581218_1581656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888818.1|1581667_1582834_+	DUF2800 domain-containing protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.5e-117
WP_009888819.1|1582848_1583184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429822.1|1583236_1583809_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA	NA
WP_003433516.1|1583831_1584404_+	DUF2815 family protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
WP_009888821.1|1584403_1586362_+	DNA polymerase	NA	A0A0A7RTL3	Clostridium_phage	69.1	7.8e-265
WP_009888822.1|1586373_1588791_+	virulence-associated protein E	NA	A0A0A7RTG3	Clostridium_phage	67.7	0.0e+00
WP_003433522.1|1589072_1589399_+	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.4	8.7e-20
WP_009888823.1|1589347_1590718_+	DEAD/DEAH box helicase	NA	A0A1S7FYY5	Listeria_phage	60.0	8.4e-157
WP_009888824.1|1590741_1590879_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888825.1|1590871_1591351_+	sigma-70 region 4 domain-containing protein	NA	I2E8Y5	Clostridium_phage	51.0	4.4e-36
WP_009888827.1|1592377_1593352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429834.1|1593372_1593882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888829.1|1593951_1594644_+	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	97.0	7.0e-120
WP_012816148.1|1594621_1595875_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	98.3	1.2e-245
WP_009888831.1|1595880_1597323_+|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	97.7	3.0e-274
WP_009893134.1|1597312_1598848_+|capsid	minor capsid protein	capsid	X5JAI9	Clostridium_phage	71.9	2.5e-194
WP_009888832.1|1598849_1599098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888833.1|1599165_1599729_+	phage scaffolding protein	NA	A0A0A8WFU8	Clostridium_phage	93.6	6.0e-85
WP_009888834.1|1599740_1600631_+	hypothetical protein	NA	X5J9Z5	Clostridium_phage	99.3	1.4e-165
WP_009888835.1|1600649_1600883_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	93.5	4.6e-31
WP_009888836.1|1600892_1601294_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
WP_003433540.1|1601287_1601635_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
WP_009893135.1|1601634_1601925_+	HK97 gp10 family phage protein	NA	A0A0A8WFV8	Clostridium_phage	96.7	4.1e-45
WP_009888838.1|1602034_1602841_+	hypothetical protein	NA	F8UBL7	Clostridium_phage	48.0	2.4e-47
WP_009888839.1|1603189_1603627_+	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	95.2	3.3e-75
WP_009888840.1|1603619_1603796_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	93.1	1.1e-21
WP_009893136.1|1603796_1605107_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	X5JAJ1	Clostridium_phage	92.7	8.1e-234
WP_009888842.1|1605123_1605594_+|tail	phage tail tube protein	tail	A0A0A8WJ62	Clostridium_phage	81.3	1.3e-69
WP_009888843.1|1605652_1606480_+	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	48.3	1.8e-45
WP_003429853.1|1606551_1606992_+|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
WP_003429855.1|1607332_1607494_+	hypothetical protein	NA	A0A0A8WE04	Clostridium_phage	84.3	1.2e-14
WP_003429858.1|1608830_1609019_+	hypothetical protein	NA	X5JAJ2	Clostridium_phage	96.8	2.2e-23
WP_009888845.1|1609137_1610004_+	hypothetical protein	NA	X5JAW1	Clostridium_phage	80.1	3.2e-130
WP_009888847.1|1610868_1611396_+	DUF4352 domain-containing protein	NA	A0A0A8WJ63	Clostridium_phage	97.1	8.7e-62
WP_009888848.1|1611533_1612301_+	DUF4428 domain-containing protein	NA	X5JB37	Clostridium_phage	44.4	6.3e-45
WP_009893138.1|1612366_1614739_+	tape measure protein	NA	X5JAB7	Clostridium_phage	41.5	8.8e-146
WP_009888849.1|1614755_1615445_+	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	94.8	2.0e-119
WP_009893140.1|1615437_1617330_+	C40 family peptidase	NA	A3QSB3	Clostridium_virus	94.8	0.0e+00
WP_009893142.1|1617343_1617604_+	DUF2577 domain-containing protein	NA	A0A0A8WJ65	Clostridium_phage	86.0	1.4e-33
WP_009888851.1|1617608_1618028_+	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	95.7	1.3e-71
WP_009888852.1|1618028_1619078_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFK0	Clostridium_phage	94.8	1.0e-186
WP_003433579.1|1619070_1619688_+	YmfQ family protein	NA	A0A0A8WII4	Clostridium_phage	98.0	8.8e-114
WP_009888853.1|1619699_1620725_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	87.8	9.1e-140
WP_009893144.1|1620741_1622268_+	hypothetical protein	NA	B6SBV0	Clostridium_virus	60.8	1.3e-89
WP_009889429.1|1622282_1622576_+	hypothetical protein	NA	E2ELK3	Clostridium_phage	77.9	2.2e-38
WP_009889431.1|1622575_1622758_+	hypothetical protein	NA	A3QSC3	Clostridium_virus	95.0	5.5e-24
WP_009889434.1|1622791_1623358_+	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	77.8	3.6e-37
WP_009889435.1|1623388_1623679_+	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	95.8	6.9e-45
WP_009889440.1|1623682_1623940_+|holin	phage holin family protein	holin	A3QSC5	Clostridium_virus	100.0	1.1e-41
WP_003429958.1|1624200_1625064_+	Abi family protein	NA	A3QSC6	Clostridium_virus	99.7	8.4e-163
WP_009889444.1|1625142_1625955_+	N-acetylmuramoyl-L-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
WP_009893147.1|1626048_1628448_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
WP_003433687.1|1628488_1628674_-	hypothetical protein	NA	A0A0A8WHQ4	Clostridium_phage	62.1	7.6e-13
>prophage 127
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1636672	1645870	4190038		Bacillus_phage(50.0%)	7	NA	NA
WP_009893153.1|1636672_1637887_+	helix-turn-helix transcriptional regulator	NA	A0A0A7RUJ5	Clostridium_phage	41.4	5.4e-06
WP_009889468.1|1638306_1638828_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003436560.1|1639183_1639981_+	G5 domain-containing protein	NA	S6BUU4	Bacillus_phage	49.5	6.6e-13
WP_009893156.1|1640090_1640681_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_009893157.1|1640746_1642444_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	47.2	2.1e-141
WP_003436555.1|1642657_1643497_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_009893166.1|1644013_1645870_+	PAS domain-containing protein	NA	W8CYF6	Bacillus_phage	28.6	9.3e-26
>prophage 128
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1654986	1656483	4190038		Staphylococcus_phage(100.0%)	1	NA	NA
WP_009889476.1|1654986_1656483_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.5	4.6e-15
>prophage 129
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1661693	1665541	4190038		Streptococcus_phage(100.0%)	3	NA	NA
WP_009893173.1|1661693_1663751_+	potassium-transporting ATPase subunit KdpB	NA	E4ZFI9	Streptococcus_phage	26.7	4.0e-38
WP_009889483.1|1663769_1664396_+	K(+)-transporting ATPase subunit C	NA	NA	NA	NA	NA
WP_003436514.1|1664632_1665541_+	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	48.4	3.4e-74
>prophage 130
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1673266	1676191	4190038		Brazilian_cedratvirus(50.0%)	4	NA	NA
WP_009889501.1|1673266_1674229_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.8	1.2e-19
WP_009889503.1|1674232_1674691_-	GyrI-like domain-containing protein	NA	NA	NA	NA	NA
WP_003436478.1|1675046_1675403_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009893181.1|1675474_1676191_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.7	1.4e-17
>prophage 131
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1683177	1683972	4190038		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_003436445.1|1683177_1683972_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	31.2	5.6e-20
>prophage 132
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1688804	1689530	4190038		Staphylococcus_phage(100.0%)	1	NA	NA
WP_003436372.1|1688804_1689530_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.0	8.7e-20
>prophage 133
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1696886	1714056	4190038		Bacillus_phage(25.0%)	14	NA	NA
WP_100882481.1|1696886_1697588_+	VanR-ABDEGLN family response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.7	7.1e-43
WP_012816161.1|1697637_1698720_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	31.0	4.3e-23
WP_003436404.1|1698980_1700081_+	D-alanine--D-serine ligase VanG	NA	NA	NA	NA	NA
WP_003436406.1|1700077_1700884_+	M15 family metallopeptidase	NA	NA	NA	NA	NA
WP_009893196.1|1700901_1703040_+	serine racemase VanT catalytic subunit	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	31.9	2.0e-32
WP_003436409.1|1703353_1703974_+	TVP38/TMEM64 family protein	NA	NA	NA	NA	NA
WP_009889535.1|1704139_1704676_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_021366642.1|1704788_1705463_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	50.3	4.4e-50
WP_009889538.1|1705665_1707540_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2P1ELF7	Moumouvirus	30.1	4.7e-25
WP_009889540.1|1707631_1709068_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA	NA
WP_003420269.1|1709396_1709975_+	TerD family protein	NA	A0A0S4KZ16	Pseudomonas_phage	36.9	2.1e-16
WP_009889542.1|1710013_1710592_+	TerD family protein	NA	NA	NA	NA	NA
WP_003430074.1|1710677_1711307_+	TerD family protein	NA	K4JRX3	Caulobacter_phage	33.8	1.1e-26
WP_009893200.1|1711296_1714056_+	calcium-translocating P-type ATPase, PMCA-type	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	29.6	8.5e-92
>prophage 134
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1724508	1727160	4190038		uncultured_Caudovirales_phage(50.0%)	3	NA	NA
WP_009889547.1|1724508_1725462_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	48.7	2.0e-80
WP_009889548.1|1725451_1726408_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_009889549.1|1726404_1727160_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.1	8.5e-18
>prophage 135
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1737258	1743970	4190038		Prochlorococcus_phage(66.67%)	3	NA	NA
WP_009889553.1|1737258_1739733_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	36.3	1.3e-59
WP_009889554.1|1739732_1741190_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA	E3ST28	Prochlorococcus_phage	42.2	1.1e-87
WP_009893215.1|1741612_1743970_+	HAD-IC family P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	28.3	3.5e-38
>prophage 136
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1750471	1751023	4190038		Thermoanaerobacterium_phage(100.0%)	1	NA	NA
WP_004454500.1|1750471_1751023_-	helix-turn-helix transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	50.9	7.1e-06
>prophage 137
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1758108	1762019	4190038		Anomala_cuprea_entomopoxvirus(33.33%)	4	NA	NA
WP_009889563.1|1758108_1758996_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	35.5	2.0e-26
WP_009889564.1|1759001_1759775_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_009893221.1|1759886_1760612_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.8	7.3e-35
WP_009893223.1|1760615_1762019_+	HAMP domain-containing histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	25.0	3.6e-14
>prophage 138
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1773987	1777243	4190038		Bacillus_phage(33.33%)	4	NA	NA
WP_009889581.1|1773987_1774659_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.9	3.5e-23
WP_004454470.1|1774648_1775881_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_003420374.1|1776030_1776348_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	41.4	3.3e-16
WP_003430157.1|1776364_1777243_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A249XZT7	Enterococcus_phage	27.8	1.2e-18
>prophage 139
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1782298	1788809	4190038		Staphylococcus_phage(60.0%)	5	NA	NA
WP_009889589.1|1782298_1782760_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	61.8	3.3e-49
WP_009889591.1|1782865_1784059_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	57.0	2.1e-119
WP_009889593.1|1784081_1784747_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	40.3	1.6e-36
WP_009889631.1|1784780_1785884_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	40.0	2.8e-54
WP_009893240.1|1786325_1788809_+	DNA helicase RecQ	NA	A0A167RIL2	Powai_lake_megavirus	41.4	1.8e-88
>prophage 140
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1835725	1842589	4190038	protease	Clostridium_phage(25.0%)	8	NA	NA
WP_009893272.1|1835725_1838113_+|protease	cell wall-binding cysteine protease Cwp13	protease	A0A0A8WJG0	Clostridium_phage	35.5	2.2e-27
WP_003430242.1|1838343_1838577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009893274.1|1838865_1839456_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009889705.1|1839569_1840415_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.2	8.8e-24
WP_009889707.1|1840411_1841089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889708.1|1841085_1841802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003423694.1|1841898_1842162_+	helix-turn-helix transcriptional regulator	NA	B3RH39	Bacillus_virus	41.9	3.7e-05
WP_003423696.1|1842133_1842589_+	peptide deformylase	NA	A0A142EZU8	Stenotrophomonas_phage	35.3	6.7e-10
>prophage 141
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1859353	1866215	4190038		Tupanvirus(25.0%)	8	NA	NA
WP_009889724.1|1859353_1859848_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A2K9L300	Tupanvirus	39.0	5.2e-24
WP_003430265.1|1859963_1860341_+	monooxygenase	NA	NA	NA	NA	NA
WP_009893285.1|1860546_1860987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889728.1|1861617_1862925_+	hypothetical protein	NA	O64084	Bacillus_phage	29.0	1.6e-43
WP_009889730.1|1863398_1864202_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003430270.1|1864239_1864851_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003423753.1|1864882_1865554_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.4	1.0e-30
WP_003433620.1|1865852_1866215_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	53.2	3.5e-22
>prophage 142
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1871897	1873331	4190038		Bacillus_phage(100.0%)	1	NA	NA
WP_003430278.1|1871897_1873331_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	32.1	1.1e-34
>prophage 143
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1879660	1880635	4190038		Bacillus_virus(100.0%)	1	NA	NA
WP_003439509.1|1879660_1880635_-	exonuclease domain-containing protein	NA	G3MBN3	Bacillus_virus	31.4	2.6e-11
>prophage 144
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1888006	1893520	4190038		Pseudomonas_phage(25.0%)	5	NA	NA
WP_003430302.1|1888006_1888588_-	TerD family protein	NA	W8EDB4	Pseudomonas_phage	33.3	5.2e-15
WP_003439494.1|1888627_1889194_-	TerD family protein	NA	K4JRX3	Caulobacter_phage	30.9	5.5e-22
WP_003430304.1|1889648_1890509_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	36.2	1.6e-41
WP_009889757.1|1890657_1891548_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_074014328.1|1891765_1893520_+	cell wall-binding protein Cwp23	NA	A0A0A8WJG0	Clostridium_phage	46.7	1.1e-65
>prophage 145
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1901511	1903079	4190038		Clostridium_virus(50.0%)	2	NA	NA
WP_003430316.1|1901511_1901889_+	BlaI/MecI/CopY family transcriptional regulator	NA	A3QSD4	Clostridium_virus	58.7	1.2e-33
WP_003439467.1|1902419_1903079_+	hypothetical protein	NA	X5JAC0	Clostridium_phage	50.5	8.9e-48
>prophage 146
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1913691	1916349	4190038		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_009889782.1|1913691_1916349_+	cation-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	31.7	2.4e-91
>prophage 147
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1919764	1931420	4190038	protease	Micromonas_pusilla_virus(25.0%)	9	NA	NA
WP_003428619.1|1919764_1921582_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	47.8	2.7e-102
WP_009893308.1|1921759_1924462_+	sensor histidine kinase KdpD	NA	A0A1V0SGX0	Hokovirus	29.6	2.6e-16
WP_003439430.1|1924495_1925194_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_009889783.1|1925532_1926489_+	CorA family divalent cation transporter	NA	NA	NA	NA	NA
WP_003428626.1|1926665_1926821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003428627.1|1926950_1927964_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	29.4	7.9e-19
WP_009893310.1|1927985_1929050_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_009889786.1|1929049_1930363_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_009889788.1|1930340_1931420_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	38.0	5.9e-57
>prophage 148
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1936661	1940099	4190038		Bacillus_virus(100.0%)	1	NA	NA
WP_009893315.1|1936661_1940099_+	PAS domain-containing protein	NA	G3MA91	Bacillus_virus	34.6	1.0e-17
>prophage 149
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1948822	1949557	4190038		Streptococcus_phage(100.0%)	1	NA	NA
WP_009889846.1|1948822_1949557_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	63.1	1.5e-88
>prophage 150
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1952759	1958959	4190038		Clostridium_phage(50.0%)	5	NA	NA
WP_003435466.1|1952759_1953548_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WE15	Clostridium_phage	62.3	1.9e-89
WP_009889849.1|1953686_1954124_-	dCMP deaminase	NA	A7KUY9	Bacillus_phage	54.3	5.9e-32
WP_009889853.1|1954945_1955455_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	43.8	1.0e-06
WP_003435446.1|1956365_1957166_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_009893325.1|1957360_1958959_-	recombinase family protein	NA	A0A1L2BY67	Clostridium_phage	44.4	3.9e-113
>prophage 151
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1981307	1989540	4190038	integrase	Bacillus_virus(25.0%)	9	NA	NA
WP_003435382.1|1981307_1981907_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	36.2	4.2e-28
WP_009889892.1|1982075_1983434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889894.1|1983426_1984059_+	OmpA family protein	NA	NA	NA	NA	NA
WP_009893338.1|1984387_1985545_+	MBL fold metallo-hydrolase	NA	Q332C0	Clostridium_botulinum_C_phage	42.2	1.0e-54
WP_009889896.1|1985692_1986328_-	transcriptional repressor LexA	NA	A0A0N9RTK0	Paenibacillus_phage	43.3	2.8e-14
WP_003435347.1|1986431_1987559_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_003435340.1|1987880_1988726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009889900.1|1988755_1989127_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_003428736.1|1989279_1989540_-	stage V sporulation protein S	NA	J9PTX7	Bacillus_phage	43.4	2.9e-10
>prophage 152
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	1999402	2005563	4190038		Planktothrix_phage(33.33%)	4	NA	NA
WP_009889917.1|1999402_2000089_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.8	5.5e-32
WP_009893346.1|2000103_2002581_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_009889918.1|2002800_2004204_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	26.6	8.9e-21
WP_003424097.1|2004702_2005563_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	32.8	1.3e-35
>prophage 153
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2011500	2012187	4190038		Planktothrix_phage(100.0%)	1	NA	NA
WP_003435313.1|2011500_2012187_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.5	2.3e-30
>prophage 154
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2016004	2017783	4190038		Bacillus_phage(50.0%)	2	NA	NA
WP_009893355.1|2016004_2017036_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	26.1	1.5e-17
WP_009893356.1|2017117_2017783_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.0	6.7e-35
>prophage 155
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2033704	2039423	4190038		Wolbachia_phage(33.33%)	3	NA	NA
WP_009889951.1|2033704_2035672_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	31.7	3.7e-73
WP_003435264.1|2035682_2038526_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	27.5	4.5e-64
WP_003435263.1|2038688_2039423_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.9	3.3e-11
>prophage 156
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2043831	2044950	4190038	transposase	Geobacillus_virus(100.0%)	1	NA	NA
WP_012816228.1|2043831_2044950_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	54.1	3.7e-110
>prophage 157
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2049721	2051158	4190038		Clostridioides_phage(100.0%)	1	NA	NA
WP_009893380.1|2049721_2051158_-	cell wall-binding protein Cwp28	NA	A0A2R2ZGK6	Clostridioides_phage	48.2	1.2e-73
>prophage 158
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2056320	2057388	4190038	integrase	Lactococcus_phage(50.0%)	3	2049069:2049085	2057722:2057738
2049069:2049085	attL	CATGTTTATATTTTTTT	NA	NA	NA	NA
WP_003431034.1|2056320_2056521_+	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	68.3	5.0e-18
WP_009889964.1|2056684_2056984_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021370420.1|2057205_2057388_+|integrase	phage integrase family protein	integrase	A0A090EUH1	Clostridium_phage	83.0	2.5e-16
2057722:2057738	attR	AAAAAAATATAAACATG	NA	NA	NA	NA
>prophage 159
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2066757	2067696	4190038		Bacillus_phage(100.0%)	1	NA	NA
WP_009889978.1|2066757_2067696_-	S8 family peptidase	NA	A0A127AWU5	Bacillus_phage	45.3	2.9e-60
>prophage 160
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2071367	2072545	4190038		Clostridium_phage(100.0%)	2	NA	NA
WP_003435199.1|2071367_2071625_-	hypothetical protein	NA	J9QD22	Clostridium_phage	56.6	2.2e-18
WP_003428913.1|2072173_2072545_+	helix-turn-helix transcriptional regulator	NA	A0A090D830	Clostridium_phage	39.1	4.3e-15
>prophage 161
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2076008	2081258	4190038		Cronobacter_phage(50.0%)	5	NA	NA
WP_009889995.1|2076008_2078603_-	ATP-dependent chaperone ClpB	NA	K4FB40	Cronobacter_phage	36.4	6.9e-128
WP_003435191.1|2078639_2079236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009889997.1|2079252_2079657_-	replication/maintenance protein RepL	NA	NA	NA	NA	NA
WP_003424232.1|2080023_2080398_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009889998.1|2080403_2081258_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.3	1.7e-22
>prophage 162
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2087164	2088352	4190038		Klosneuvirus(100.0%)	1	NA	NA
WP_009893400.1|2087164_2088352_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	28.5	9.5e-32
>prophage 163
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2098146	2098431	4190038		Clostridium_phage(100.0%)	1	NA	NA
WP_009890006.1|2098146_2098431_-	hypothetical protein	NA	Q24LG2	Clostridium_phage	59.1	8.1e-22
>prophage 164
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2112455	2114120	4190038	tRNA	Escherichia_phage(100.0%)	1	NA	NA
WP_009890175.1|2112455_2114120_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	54.2	4.3e-171
>prophage 165
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2117222	2127356	4190038	transposase,integrase	Clostridioides_phage(60.0%)	10	2114204:2114220	2136355:2136371
2114204:2114220	attL	TCTTCATCATTTACTTT	NA	NA	NA	NA
WP_003424324.1|2117222_2117798_-	hypothetical protein	NA	A0A2R2ZGQ3	Clostridioides_phage	57.5	5.4e-49
WP_009890184.1|2118113_2118377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_100882483.1|2118805_2119183_-	BlaI/MecI/CopY family transcriptional regulator	NA	A0A2R2ZGM0	Clostridioides_phage	63.9	5.5e-26
WP_009893419.1|2119523_2120636_+|integrase	site-specific integrase	integrase	A0A2R2ZGM9	Clostridioides_phage	77.0	2.7e-161
WP_009893421.1|2120843_2121320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003429004.1|2121518_2123144_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	25.0	9.3e-46
WP_003435117.1|2123481_2124501_-	molybdopterin-binding protein	NA	NA	NA	NA	NA
WP_009890188.1|2124497_2125067_-	molybdenum cofactor cytidylyltransferase	NA	NA	NA	NA	NA
WP_009893422.1|2125173_2125896_-	putative selenium-dependent hydroxylase accessory protein YqeC	NA	NA	NA	NA	NA
WP_009893423.1|2126078_2127356_-|transposase	transposase	transposase	G3MB42	Bacillus_virus	35.3	1.6e-53
2136355:2136371	attR	TCTTCATCATTTACTTT	NA	NA	NA	NA
>prophage 166
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2149577	2150048	4190038		Acinetobacter_phage(100.0%)	1	NA	NA
WP_009890222.1|2149577_2150048_-	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	35.9	4.8e-19
>prophage 167
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2157541	2161820	4190038		Acidithiobacillus_phage(50.0%)	4	NA	NA
WP_009893437.1|2157541_2159476_-	AAA family ATPase	NA	K4I1H4	Acidithiobacillus_phage	33.0	1.8e-32
WP_009893439.1|2159504_2160227_-	cell division protein	NA	NA	NA	NA	NA
WP_009893441.1|2160276_2161263_-	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_009890234.1|2161319_2161820_-	QueT transporter family protein	NA	E7DN70	Pneumococcus_phage	34.8	9.2e-13
>prophage 168
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2164824	2165274	4190038		Acinetobacter_phage(100.0%)	1	NA	NA
WP_003434060.1|2164824_2165274_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	30.9	4.1e-12
>prophage 169
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2171002	2174597	4190038		Staphylococcus_phage(33.33%)	3	NA	NA
WP_003434049.1|2171002_2171710_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.1	1.8e-22
WP_009890236.1|2171961_2173107_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.4	2.8e-41
WP_009890237.1|2173220_2174597_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	34.3	1.9e-52
>prophage 170
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2177982	2178657	4190038		Synechococcus_phage(100.0%)	1	NA	NA
WP_009890239.1|2177982_2178657_-	fructose-6-phosphate aldolase	NA	E3SKN5	Synechococcus_phage	37.7	1.5e-34
>prophage 171
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2181866	2189101	4190038		Bacillus_phage(25.0%)	6	NA	NA
WP_003424455.1|2181866_2182535_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	41.1	1.7e-41
WP_009890244.1|2182694_2185196_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	35.4	3.0e-104
WP_003424459.1|2185486_2185678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_022619208.1|2185825_2186068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003430621.1|2186279_2188103_+	translational GTPase TypA	NA	A0A1S5SF82	Streptococcus_phage	28.5	2.3e-24
WP_003434033.1|2188192_2189101_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	38.2	4.1e-59
>prophage 172
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2206741	2206945	4190038		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_009890274.1|2206741_2206945_-	helix-turn-helix domain-containing protein	NA	A0A2K5B261	Erysipelothrix_phage	43.5	7.3e-09
>prophage 173
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2211377	2212112	4190038		Flavobacterium_phage(100.0%)	1	NA	NA
WP_003424529.1|2211377_2212112_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	48.5	3.0e-28
>prophage 174
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2215628	2226845	4190038		Erythrobacter_phage(20.0%)	9	NA	NA
WP_009890281.1|2215628_2216813_-	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	30.8	1.6e-07
WP_009893483.1|2216916_2217975_-	potassium channel family protein	NA	NA	NA	NA	NA
WP_009890288.1|2218188_2218833_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_009893485.1|2219017_2219641_+	sporulation membrane protein YtaF	NA	NA	NA	NA	NA
WP_009890292.1|2219703_2221614_-	mannonate oxidoreductase	NA	F2Y0V3	Organic_Lake_phycodnavirus	27.8	1.9e-18
WP_009890294.1|2222150_2223218_-	RNA ligase RtcB family protein	NA	A0A0K2CNT0	Brevibacillus_phage	25.6	1.3e-24
WP_012816248.1|2223463_2224459_-	protein kinase	NA	A0A285PXS3	Cedratvirus	21.8	6.8e-07
WP_009890298.1|2224717_2225977_-	VanW family protein	NA	NA	NA	NA	NA
WP_003433980.1|2226215_2226845_-	endonuclease/exonuclease/phosphatase family protein	NA	A0A1V0SL41	Klosneuvirus	29.2	7.1e-10
>prophage 175
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2235158	2236478	4190038		Klosneuvirus(100.0%)	1	NA	NA
WP_009893495.1|2235158_2236478_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	A0A1V0SKB7	Klosneuvirus	24.4	5.2e-23
>prophage 176
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2242832	2246098	4190038		Clostridium_phage(50.0%)	3	NA	NA
WP_009890330.1|2242832_2243963_-	helix-turn-helix domain-containing protein	NA	A0A0A7RTT7	Clostridium_phage	41.0	1.6e-73
WP_009893500.1|2244115_2245069_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_009890334.1|2245192_2246098_-	patatin-like phospholipase family protein	NA	J2YBI2	Acanthamoeba_polyphaga_lentillevirus	34.6	4.4e-05
>prophage 177
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2251734	2252484	4190038		Indivirus(100.0%)	1	NA	NA
WP_009890348.1|2251734_2252484_-	amino acid ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.7	2.7e-16
>prophage 178
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2257962	2267246	4190038		Escherichia_phage(25.0%)	5	NA	NA
WP_012816254.1|2257962_2260140_-	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	26.5	2.9e-34
WP_009893508.1|2260420_2263600_+	DEAD/DEAH box helicase	NA	E5EQH3	Micromonas_sp._RCC1109_virus	29.7	1.2e-41
WP_009890358.1|2263884_2264649_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_009899906.1|2264885_2266379_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	35.0	5.3e-48
WP_003433910.1|2266703_2267246_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WFX1	Clostridium_phage	58.1	3.0e-57
>prophage 179
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2271583	2272477	4190038		Clostridium_phage(100.0%)	1	NA	NA
WP_009890365.1|2271583_2272477_-	glucosaminidase domain-containing protein	NA	A0A0A7RUS8	Clostridium_phage	48.1	1.6e-31
>prophage 180
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2279436	2280879	4190038		Clostridioides_phage(100.0%)	1	NA	NA
WP_003433893.1|2279436_2280879_-	cell wall-binding repeat-containing protein	NA	A0A2R2ZGK6	Clostridioides_phage	49.4	9.7e-71
>prophage 181
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2288463	2289567	4190038		Pacmanvirus(100.0%)	1	NA	NA
WP_009893521.1|2288463_2289567_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.6	9.8e-23
>prophage 182
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2301097	2307594	4190038		Bacillus_phage(66.67%)	5	NA	NA
WP_009890387.1|2301097_2302930_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.7	1.0e-45
WP_003433859.1|2302922_2305169_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.4	6.0e-43
WP_003433857.1|2305236_2305698_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003423380.1|2306002_2306569_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_003423377.1|2307255_2307594_+	helix-turn-helix transcriptional regulator	NA	A0A0A8WIP7	Clostridium_phage	54.6	8.7e-23
>prophage 183
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2310660	2311293	4190038		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_009890401.1|2310660_2311293_+	CatB-related O-acetyltransferase	NA	A0A2R8FE91	Brazilian_cedratvirus	41.5	8.6e-24
>prophage 184
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2322560	2323364	4190038		Vibrio_phage(100.0%)	1	NA	NA
WP_009890421.1|2322560_2323364_-	hypothetical protein	NA	A0A2I7QV58	Vibrio_phage	23.6	2.1e-06
>prophage 185
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2331179	2338605	4190038	tRNA	Moumouvirus(50.0%)	4	NA	NA
WP_003430444.1|2331179_2332577_-|tRNA	asparagine--tRNA ligase	tRNA	M1PB22	Moumouvirus	39.8	4.9e-88
WP_009890435.1|2333055_2333250_-	DUF3787 domain-containing protein	NA	NA	NA	NA	NA
WP_009890437.1|2333523_2335197_-	S8 family peptidase	NA	NA	NA	NA	NA
WP_009893539.1|2335206_2338605_-	S8 family serine peptidase	NA	A0A127AWU5	Bacillus_phage	31.5	2.6e-05
>prophage 186
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2344636	2346019	4190038		Streptococcus_phage(100.0%)	1	NA	NA
WP_003440226.1|2344636_2346019_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.2	2.1e-14
>prophage 187
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2353043	2356481	4190038		Acinetobacter_phage(100.0%)	2	NA	NA
WP_009893549.1|2353043_2354837_-	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	39.4	1.1e-127
WP_003430410.1|2355089_2356481_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.4	1.7e-56
>prophage 188
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2372196	2374317	4190038		Indivirus(100.0%)	1	NA	NA
WP_009890468.1|2372196_2374317_-	DNA topoisomerase III	NA	A0A1V0SCS0	Indivirus	27.0	6.2e-26
>prophage 189
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2377988	2379047	4190038		Tupanvirus(100.0%)	1	NA	NA
WP_009890476.1|2377988_2379047_-	galactitol-1-phosphate 5-dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	29.0	4.1e-18
>prophage 190
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2386212	2386581	4190038		Clostridium_phage(100.0%)	1	NA	NA
WP_100882484.1|2386212_2386581_+	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WJP7	Clostridium_phage	43.2	5.2e-21
>prophage 191
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2390825	2395243	4190038		Bacillus_phage(66.67%)	3	NA	NA
WP_009890490.1|2390825_2392886_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	25.2	1.1e-14
WP_004454566.1|2393081_2393774_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.6	3.1e-35
WP_009890495.1|2394865_2395243_-	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WJU1	Clostridium_phage	88.8	1.1e-50
>prophage 192
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2398267	2415972	4190038	transposase	Paenibacillus_phage(20.0%)	19	NA	NA
WP_003423163.1|2398267_2398468_+	helix-turn-helix transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	45.8	3.7e-05
WP_104694838.1|2398723_2399704_-|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	60.7	1.5e-78
WP_009893571.1|2399616_2400288_-	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	42.5	1.8e-43
WP_009890506.1|2400615_2400792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003423148.1|2401016_2401217_+	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	71.4	2.0e-19
WP_004454609.1|2401851_2402664_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_009890511.1|2402673_2403465_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_009893573.1|2403466_2404162_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	32.3	5.2e-22
WP_009890514.1|2404148_2404880_+	membrane protein	NA	NA	NA	NA	NA
WP_009890515.1|2405194_2405995_+	PIG-L family deacetylase	NA	NA	NA	NA	NA
WP_009890517.1|2406535_2407252_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.9	2.7e-34
WP_009893576.1|2407220_2408813_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	23.5	2.1e-10
WP_009890519.1|2409124_2410627_-	phosphoglucomutase	NA	NA	NA	NA	NA
WP_003430699.1|2410736_2411402_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003430700.1|2411440_2411887_-	ribose 5-phosphate isomerase B	NA	A0A222YX14	Synechococcus_phage	31.7	3.3e-14
WP_003430702.1|2412061_2412982_-	transketolase family protein	NA	NA	NA	NA	NA
WP_003430704.1|2412984_2413797_-	transketolase	NA	NA	NA	NA	NA
WP_009893579.1|2413888_2414920_-	zinc-binding dehydrogenase	NA	K7Z7U2	Megavirus	27.6	5.4e-15
WP_009890524.1|2414919_2415972_-	galactitol-1-phosphate 5-dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	25.7	2.2e-11
>prophage 193
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2421893	2422544	4190038		Synechococcus_phage(100.0%)	1	NA	NA
WP_009890531.1|2421893_2422544_-	fructose-6-phosphate aldolase	NA	R9TM64	Synechococcus_phage	50.9	4.2e-50
>prophage 194
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2429375	2430875	4190038		Klosneuvirus(100.0%)	1	NA	NA
WP_003423106.1|2429375_2430875_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	33.2	1.8e-56
>prophage 195
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2452808	2453756	4190038		Bacillus_virus(100.0%)	1	NA	NA
WP_003416869.1|2452808_2453756_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	43.7	1.3e-63
>prophage 196
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2458565	2459318	4190038		Bacillus_virus(100.0%)	1	NA	NA
WP_003430772.1|2458565_2459318_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.2	9.3e-33
>prophage 197
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2488270	2488648	4190038		Clostridium_phage(100.0%)	1	NA	NA
WP_012816278.1|2488270_2488648_-	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	50.8	8.2e-30
>prophage 198
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2492074	2492452	4190038		Clostridium_phage(100.0%)	1	NA	NA
WP_003430818.1|2492074_2492452_-	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	53.2	1.6e-30
>prophage 199
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2496066	2496573	4190038		Clostridium_phage(100.0%)	1	NA	NA
WP_004454691.1|2496066_2496573_-	3'-5' exonuclease	NA	A0A0A7RWA3	Clostridium_phage	41.2	2.9e-22
>prophage 200
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2499765	2517657	4190038	tRNA,transposase,coat	Escherichia_phage(14.29%)	15	NA	NA
WP_009890594.1|2499765_2500626_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	32.4	2.9e-30
WP_003416732.1|2500904_2501114_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
WP_004454698.1|2501113_2501380_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
WP_003416728.1|2501408_2501981_+	manganese catalase family protein	NA	NA	NA	NA	NA
WP_009890599.1|2502214_2503405_-	C40 family peptidase	NA	A0A0K2SUC1	Clostridium_phage	50.7	1.7e-28
WP_004454700.1|2503664_2504096_-	dUTP diphosphatase	NA	A0A1L2BX65	Bacteriophage	51.0	4.6e-37
WP_009893600.1|2504208_2506437_+	type IA DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	29.0	1.1e-28
WP_004454702.1|2506547_2507033_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009890602.1|2507284_2508508_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003430847.1|2508511_2511646_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	26.8	1.6e-110
WP_012816284.1|2511679_2512978_+	TolC family protein	NA	NA	NA	NA	NA
WP_012816285.1|2513187_2514015_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	35.9	5.2e-37
WP_009890608.1|2514041_2514359_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009890610.1|2514570_2514816_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_009890612.1|2515029_2517657_-	pyruvate, phosphate dikinase	NA	H8YJB7	Vibrio_phage	41.0	4.3e-93
>prophage 201
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2550576	2551692	4190038		Pseudomonas_phage(100.0%)	1	NA	NA
WP_009890649.1|2550576_2551692_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	42.6	1.4e-48
>prophage 202
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2554799	2555243	4190038		Xanthomonas_phage(100.0%)	1	NA	NA
WP_003430905.1|2554799_2555243_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	44.2	3.0e-23
>prophage 203
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2559472	2561881	4190038		Clostridioides_phage(100.0%)	1	NA	NA
WP_009893604.1|2559472_2561881_-	CRISPR-associated helicase/endonuclease Cas3	NA	A0A2R2ZGW0	Clostridioides_phage	75.7	0.0e+00
>prophage 204
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2566238	2574855	4190038		Mycoplasma_phage(25.0%)	6	NA	NA
WP_009890666.1|2566238_2567348_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	33.8	4.9e-22
WP_009893605.1|2567377_2568145_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_009893606.1|2568332_2569706_-	MFS transporter	NA	S4TR35	Salmonella_phage	22.0	2.5e-07
WP_009890668.1|2569741_2570677_-	ROK family protein	NA	NA	NA	NA	NA
WP_009890672.1|2571642_2572797_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	30.6	5.1e-30
WP_009890674.1|2573007_2574855_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	52.4	8.1e-131
>prophage 205
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2579611	2582905	4190038	tRNA	unidentified_phage(50.0%)	2	NA	NA
WP_009893608.1|2579611_2580949_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	45.8	4.3e-97
WP_003416556.1|2581099_2582905_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	26.4	2.6e-25
>prophage 206
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2592883	2600841	4190038	tRNA	Clostridium_botulinum_C_phage(25.0%)	8	NA	NA
WP_009893612.1|2592883_2593720_+	MBL fold metallo-hydrolase	NA	Q332C0	Clostridium_botulinum_C_phage	39.8	9.9e-44
WP_003430963.1|2593861_2594569_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_009890693.1|2595058_2595898_-	G5 domain-containing protein	NA	L0LBX4	Bacillus_phage	44.1	7.7e-12
WP_003416528.1|2596146_2596821_-	uracil-DNA glycosylase	NA	S4VYQ4	Pandoravirus	45.3	5.2e-51
WP_009890696.1|2596857_2597229_-	NusG domain II-containing protein	NA	NA	NA	NA	NA
WP_009893613.1|2597295_2598354_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_009893614.1|2598544_2599723_-	putative C-S lyase	NA	NA	NA	NA	NA
WP_009893615.1|2599776_2600841_-	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	23.6	4.2e-15
>prophage 207
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2607652	2612379	4190038		Hokovirus(50.0%)	2	NA	NA
WP_009893616.1|2607652_2610391_-	sporulation-associated two-component system sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	27.2	2.1e-26
WP_009893618.1|2610495_2612379_-	selenocysteine-specific translation elongation factor	NA	A0A2K9KZ60	Tupanvirus	30.3	3.1e-21
>prophage 208
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2620722	2624523	4190038		Faustovirus(50.0%)	2	NA	NA
WP_009890715.1|2620722_2621826_+	histidinol-phosphate aminotransferase family protein	NA	A0A142C026	Faustovirus	25.4	8.3e-14
WP_009893623.1|2621883_2624523_-	cation-translocating P-type ATPase	NA	M1HJQ2	Paramecium_bursaria_Chlorella_virus	31.6	1.7e-97
>prophage 209
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2641257	2645761	4190038	tRNA	Staphylococcus_phage(50.0%)	4	NA	NA
WP_003416419.1|2641257_2643678_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	48.6	7.0e-215
WP_003416416.1|2644031_2644382_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_009890726.1|2644498_2645071_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	NA	NA	NA	NA	NA
WP_003416411.1|2645071_2645761_-	nicotinate-nucleotide adenylyltransferase	NA	G3MA22	Bacillus_virus	30.0	9.1e-19
>prophage 210
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2654784	2656895	4190038		Planktothrix_phage(50.0%)	2	NA	NA
WP_009890735.1|2654784_2655468_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.9	1.5e-37
WP_009893643.1|2655584_2656895_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	24.8	1.5e-14
>prophage 211
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2666459	2667878	4190038		Pseudomonas_phage(100.0%)	1	NA	NA
WP_009893649.1|2666459_2667878_-	MBOAT family protein	NA	A0A125RNP0	Pseudomonas_phage	33.7	3.6e-54
>prophage 212
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2683082	2683580	4190038		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_003416314.1|2683082_2683580_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	40.1	2.0e-23
>prophage 213
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2698234	2701259	4190038		Bacillus_phage(100.0%)	2	NA	NA
WP_009890780.1|2698234_2700568_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	26.5	6.2e-19
WP_009893664.1|2700542_2701259_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.2	4.4e-32
>prophage 214
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2706297	2708313	4190038		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_009890792.1|2706297_2708313_-	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	A0A2H4UVE2	Bodo_saltans_virus	30.1	9.2e-27
>prophage 215
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2713059	2719316	4190038	tRNA	Prochlorococcus_phage(25.0%)	6	NA	NA
WP_009890794.1|2713059_2713989_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	31.9	8.8e-09
WP_003431159.1|2714003_2714444_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	47.1	7.6e-19
WP_012816305.1|2714461_2716987_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_009890797.1|2717225_2718425_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	33.5	2.4e-51
WP_003431167.1|2718429_2718696_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_003431170.1|2718698_2719316_-	guanylate kinase	NA	U5J9X2	Bacillus_phage	38.3	1.1e-18
>prophage 216
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2724667	2727830	4190038		Streptococcus_phage(50.0%)	2	NA	NA
WP_009893675.1|2724667_2726320_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	35.1	1.1e-65
WP_100882485.1|2726618_2727830_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	34.6	9.6e-56
>prophage 217
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2734514	2741799	4190038		Clostridioides_phage(75.0%)	4	NA	NA
WP_009890816.1|2734514_2735717_-	histidine kinase	NA	Q9EYF3	Enterobacteria_phage	36.9	3.2e-19
WP_009893681.1|2736588_2737335_+	LytTR family response regulator CdtR	NA	A0A1V0E029	Clostridioides_phage	54.7	2.6e-75
WP_009890822.1|2737724_2739116_+	ADP-ribosylating binary toxin enzymatic subunit CdtA	NA	A0A1V0E017	Clostridioides_phage	58.0	1.7e-144
WP_009890823.1|2739168_2741799_+	ADP-ribosylating binary toxin binding subunit CdtB	NA	A0A1V0E026	Clostridioides_phage	79.1	0.0e+00
>prophage 218
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2747625	2755945	4190038	transposase,tRNA	Streptococcus_phage(33.33%)	6	NA	NA
WP_009890830.1|2747625_2748468_-	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	27.1	1.3e-22
WP_004454936.1|2748651_2749224_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009890831.1|2749386_2749659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009890832.1|2749785_2750592_-	YitT family protein	NA	NA	NA	NA	NA
WP_012816311.1|2750742_2751861_-|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.5	1.1e-109
WP_004454939.1|2752837_2755945_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	32.4	2.3e-162
>prophage 219
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2779508	2784729	4190038		Bacillus_phage(75.0%)	7	NA	NA
WP_003426968.1|2779508_2780798_-	HAMP domain-containing sensor histidine kinase	NA	W8CYF6	Bacillus_phage	37.7	3.4e-35
WP_003416112.1|2780826_2781519_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	41.0	5.3e-43
WP_021419397.1|2781533_2782295_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_003426974.1|2782291_2782753_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003416105.1|2782774_2783038_-	YlmC/YmxH family sporulation protein	NA	NA	NA	NA	NA
WP_003416101.1|2783141_2783915_-	RNA polymerase sporulation sigma factor SigG	NA	A0A0A0RV91	Bacillus_phage	41.0	1.6e-43
WP_003416098.1|2784006_2784729_-	RNA polymerase sporulation sigma factor SigE	NA	A0A2H4JC68	uncultured_Caudovirales_phage	43.5	4.0e-17
>prophage 220
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2802964	2805531	4190038		Bacillus_virus(50.0%)	2	NA	NA
WP_009890881.1|2802964_2804251_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	27.2	6.0e-24
WP_004454972.1|2804265_2805531_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	27.5	1.2e-35
>prophage 221
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2816783	2818733	4190038		Bacillus_virus(50.0%)	2	NA	NA
WP_009890898.1|2816783_2817755_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.8	1.1e-14
WP_009890899.1|2817755_2818733_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	26.9	2.1e-16
>prophage 222
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2829144	2830071	4190038		Bacillus_phage(100.0%)	1	NA	NA
WP_012816324.1|2829144_2830071_+	sporulation protein	NA	U5Q0C0	Bacillus_phage	62.4	1.8e-38
>prophage 223
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2839145	2842287	4190038		Bacillus_virus(50.0%)	4	NA	NA
WP_003416009.1|2839145_2839367_-	alpha/beta-type small acid-soluble spore protein	NA	G3MAF8	Bacillus_virus	50.0	1.3e-11
WP_009890924.1|2839450_2840677_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_009890926.1|2840738_2841671_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003416006.1|2841759_2842287_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	28.0	4.2e-08
>prophage 224
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2845540	2846542	4190038		Heterosigma_akashiwo_virus(100.0%)	1	NA	NA
WP_003427105.1|2845540_2846542_-	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	42.3	1.8e-60
>prophage 225
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2857399	2858743	4190038		Moraxella_phage(100.0%)	1	NA	NA
WP_009890940.1|2857399_2858743_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	32.2	7.4e-49
>prophage 226
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2872309	2874217	4190038		Tupanvirus(50.0%)	2	NA	NA
WP_003431452.1|2872309_2873323_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	50.8	2.4e-92
WP_014466379.1|2873347_2874217_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	53.7	1.5e-82
>prophage 227
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2894311	2895556	4190038		Heliothis_zea_nudivirus(100.0%)	1	NA	NA
WP_009890977.1|2894311_2895556_-	serine hydroxymethyltransferase	NA	Q8JKP0	Heliothis_zea_nudivirus	48.0	4.7e-98
>prophage 228
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2906766	2911065	4190038	tRNA	Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_009890994.1|2906766_2907573_-	carbon-nitrogen hydrolase	NA	M1I5Z5	Acanthocystis_turfacea_Chlorella_virus	29.8	2.6e-17
WP_009890996.1|2907586_2908819_-	cytosine permease	NA	NA	NA	NA	NA
WP_009890998.1|2909277_2911065_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2I2L4Y8	Orpheovirus	31.7	4.9e-08
>prophage 229
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2915140	2925336	4190038		Bacillus_phage(40.0%)	8	NA	NA
WP_003422921.1|2915140_2917348_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	U5J9N6	Bacillus_phage	45.9	2.7e-16
WP_003426450.1|2917421_2917934_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	49.7	1.0e-35
WP_004454135.1|2917946_2920397_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	35.5	3.0e-88
WP_009891005.1|2920409_2922074_-	AarF/ABC1/UbiB kinase family protein	NA	E5ES62	Bathycoccus_sp._RCC1105_virus	34.0	8.6e-47
WP_004454132.1|2922371_2922869_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_003426456.1|2922897_2924277_-	thioether cross-link-forming SCIFF peptide maturase	NA	NA	NA	NA	NA
WP_003426457.1|2924581_2924728_-	cyclic lactone autoinducer peptide	NA	NA	NA	NA	NA
WP_009891008.1|2924757_2925336_-	accessory gene regulator B family protein	NA	X5JB40	Clostridium_phage	32.8	3.5e-16
>prophage 230
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2932894	2941367	4190038		Paramecium_bursaria_Chlorella_virus(25.0%)	8	NA	NA
WP_009893721.1|2932894_2934628_-	N-6 DNA methylase	NA	A7RAG0	Paramecium_bursaria_Chlorella_virus	23.2	5.0e-05
WP_003426473.1|2934667_2935066_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_009893722.1|2935068_2936616_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_009893723.1|2936930_2937836_-	N-acetylmuramoyl-L-alanine amidase	NA	E5DV68	Deep-sea_thermophilic_phage	35.2	2.2e-20
WP_003422884.1|2937878_2938523_-	di-trans,poly-cis-decaprenylcistransferase	NA	A0A076FI83	Aureococcus_anophage	24.7	1.2e-12
WP_009891020.1|2938661_2939132_+	DUF4358 domain-containing protein	NA	NA	NA	NA	NA
WP_009893724.1|2939254_2940043_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_009891022.1|2940410_2941367_+	LCP family protein	NA	A0A1X9I5X1	Streptococcus_phage	27.3	1.8e-12
>prophage 231
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	2945227	3062307	4190038	tRNA,transposase,protease,integrase	Streptococcus_phage(42.0%)	99	2987567:2987586	3075105:3075124
WP_003426490.1|2945227_2945935_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	50.4	6.2e-31
WP_009891028.1|2946133_2948047_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
WP_003431768.1|2948130_2949222_-	glycosyltransferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
WP_012816333.1|2949227_2950571_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	43.6	3.9e-90
WP_003426498.1|2950548_2951301_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
WP_004454111.1|2951348_2952257_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003426502.1|2952278_2953028_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
WP_009891031.1|2953056_2954232_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_009891033.1|2954246_2955086_-	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	26.3	5.3e-05
WP_009891035.1|2955088_2956246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003426509.1|2956261_2956984_-	glycosyl transferase	NA	A0A1V0SBR5	Catovirus	34.3	9.3e-06
WP_009893726.1|2956995_2958069_-	mannose-1-phosphate guanylyltransferase	NA	A0A1V0SH58	Hokovirus	29.6	1.7e-32
WP_009891039.1|2958090_2959797_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	45.0	2.4e-137
WP_009893727.1|2959838_2961398_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_009891041.1|2961512_2962568_-	cell wall-binding protein Cwp7	NA	A0A0A8WJG0	Clostridium_phage	29.2	2.6e-17
WP_009891044.1|2962662_2963349_-	sugar transferase	NA	NA	NA	NA	NA
WP_009891045.1|2963568_2965593_-	N-acetylmuramoyl-L-alanine amidase	NA	J9PV86	Bacillus_phage	34.9	9.5e-16
WP_074048319.1|2965846_2967184_-	DUF5009 domain-containing protein	NA	NA	NA	NA	NA
WP_009891046.1|2967317_2968895_-	cell wall-binding protein Cwp5	NA	A7KUY3	Bacillus_phage	28.6	2.9e-12
WP_009891047.1|2969191_2971603_-|protease	cell wall-binding cysteine protease Cwp84	protease	A0A0A8WJG0	Clostridium_phage	36.0	2.2e-27
WP_009891048.1|2971829_2972225_+	GtrA family protein	NA	NA	NA	NA	NA
WP_009891050.1|2972272_2974108_-	cell wall-binding repeat-containing protein	NA	A0A0A8WJG0	Clostridium_phage	33.6	2.9e-27
WP_009891052.1|2974140_2974848_-	PIG-L family deacetylase	NA	NA	NA	NA	NA
WP_009891054.1|2974954_2976826_-	cell wall-binding protein Cwp2	NA	NA	NA	NA	NA
WP_009891056.1|2977240_2979586_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_100882486.1|2979821_2982098_-	S-layer protein SlpA	NA	A0A0A8WJG0	Clostridium_phage	28.7	2.6e-17
WP_009893729.1|2982323_2983913_-	cell wall-binding protein Cwp12	NA	A0A2R2ZGK6	Clostridioides_phage	44.3	2.1e-66
WP_012816337.1|2984131_2985733_-	cell wall-binding protein Cwp11	NA	A0A2R2ZGK6	Clostridioides_phage	39.6	2.9e-60
WP_009891063.1|2986099_2987980_-	cell wall-binding protein Cwp10	NA	NA	NA	NA	NA
2987567:2987586	attL	AGATTTTTTTACAGATATTC	NA	NA	NA	NA
WP_009893730.1|2988189_2994153_-	fibronectin type III domain-containing protein	NA	NA	NA	NA	NA
WP_009891065.1|2994533_2995937_-	cell wall-binding protein Cwp9	NA	A0A2R2ZGK6	Clostridioides_phage	44.6	3.5e-65
WP_009891066.1|2996398_2998294_-	cell wall-binding protein Cwp8	NA	A0A0A8WJG0	Clostridium_phage	28.4	9.3e-05
WP_009891067.1|2998919_2999063_-	six-cysteine ranthipeptide SCIFF	NA	NA	NA	NA	NA
WP_003422821.1|2999128_2999491_-	TIGR04086 family membrane protein	NA	NA	NA	NA	NA
WP_003426573.1|2999548_2999842_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_009891071.1|2999975_3001097_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	48.2	4.8e-94
WP_003426576.1|3001175_3001661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009891074.1|3001672_3002698_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003426579.1|3003015_3004035_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	32.9	8.8e-10
WP_009891076.1|3004141_3004744_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_003422814.1|3004736_3005246_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_009891078.1|3005557_3006187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003422812.1|3006389_3006713_+	DUF1540 domain-containing protein	NA	NA	NA	NA	NA
WP_004454079.1|3006980_3007835_+	membrane protein	NA	NA	NA	NA	NA
WP_009893731.1|3008020_3009457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009891081.1|3009527_3010910_-	gluconate permease	NA	NA	NA	NA	NA
WP_003426591.1|3011045_3011951_-	2-hydroxy-3-oxopropionate reductase	NA	NA	NA	NA	NA
WP_009891085.1|3012346_3013012_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012816340.1|3013119_3013668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003426603.1|3013929_3014238_+	hypothetical protein	NA	A0A0A8WF25	Clostridium_phage	57.3	2.9e-25
WP_003426617.1|3014399_3016190_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	33.0	1.2e-54
WP_009891091.1|3016189_3017917_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.0	2.4e-36
WP_003426625.1|3019014_3020127_+	alanine racemase	NA	NA	NA	NA	NA
WP_012816342.1|3020309_3021137_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	36.3	4.7e-38
WP_009891099.1|3021163_3021481_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_003426630.1|3021797_3022307_-	nucleoside recognition protein	NA	NA	NA	NA	NA
WP_003431751.1|3022308_3022956_-	membrane protein	NA	NA	NA	NA	NA
WP_009891103.1|3022969_3024142_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_009891106.1|3024409_3025786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009891108.1|3026036_3026870_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012816344.1|3027729_3028848_-|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	54.1	1.3e-110
WP_009893735.1|3029700_3030795_-	oxidoreductase	NA	NA	NA	NA	NA
WP_009891114.1|3030796_3031243_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003436139.1|3031548_3032739_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_009891115.1|3032908_3033871_+	EamA family transporter	NA	NA	NA	NA	NA
WP_009891116.1|3033988_3034651_-|protease	zinc metalloprotease Zmp1	protease	NA	NA	NA	NA
WP_003423078.1|3038227_3039673_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	23.9	3.5e-12
WP_003423077.1|3039691_3040093_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002323370.1|3040343_3040592_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003423075.1|3040598_3041015_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	38.0	3.8e-20
WP_003423074.1|3041462_3042341_-	ParA family protein	NA	A0A1X9I765	Streptococcus_phage	97.8	1.2e-148
WP_073459356.1|3042443_3042728_-	topoisomerase DNA-binding C4 zinc finger domain-containing protein	NA	A0A1X9I6W8	Streptococcus_phage	93.0	2.3e-40
WP_002292226.1|3042873_3043611_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
WP_003423072.1|3044128_3044287_-	zeta toxin family protein	NA	NA	NA	NA	NA
WP_000301765.1|3044288_3044561_-	antitoxin	NA	A0A1X9I6E5	Streptococcus_phage	100.0	5.0e-05
WP_000527317.1|3044577_3044787_-	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	100.0	6.3e-32
WP_003423065.1|3044979_3045339_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	45.0	2.3e-21
WP_009269672.1|3045446_3045635_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	57.9	8.2e-15
WP_003423063.1|3045839_3046031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003423062.1|3046043_3046688_-	ABC-2 transporter permease	NA	NA	NA	NA	NA
WP_003423060.1|3046684_3047548_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	3.3e-18
WP_003423058.1|3047548_3047926_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003423057.1|3048046_3048958_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	52.8	1.2e-82
WP_003423055.1|3048973_3049981_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	69.9	3.0e-135
WP_003423053.1|3049977_3052173_-	YtxH domain-containing protein	NA	A0A1S5SF30	Streptococcus_phage	68.6	4.4e-176
WP_003423051.1|3052172_3054623_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.1	0.0e+00
WP_004843362.1|3054600_3054999_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	3.2e-48
WP_003423048.1|3055116_3055620_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	61.4	3.4e-55
WP_003423046.1|3055637_3056141_-	antirestriction protein ArdA	NA	NA	NA	NA	NA
WP_003423044.1|3056059_3056356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003423043.1|3056440_3057217_-	helix-turn-helix transcriptional regulator	NA	W6LMS6	Streptococcus_phage	46.6	4.9e-05
WP_002323342.1|3057420_3057642_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
WP_003423040.1|3057642_3057777_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_003423038.1|3057789_3058986_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	62.5	7.3e-149
WP_003423037.1|3059169_3060564_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	66.2	1.9e-177
WP_003423033.1|3060664_3060991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003423032.1|3061006_3061414_-	helix-turn-helix transcriptional regulator	NA	A0A0A7AQV8	Bacillus_phage	42.3	1.2e-05
WP_003423022.1|3061581_3061965_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	57.6	5.2e-32
WP_003417601.1|3061980_3062307_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	51.5	2.0e-24
3075105:3075124	attR	GAATATCTGTAAAAAAATCT	NA	NA	NA	NA
>prophage 232
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3068113	3072316	4190038		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
WP_009891126.1|3068113_3070888_-	calcium-translocating P-type ATPase, PMCA-type	NA	M1HX51	Paramecium_bursaria_Chlorella_virus	29.1	1.1e-83
WP_003436123.1|3071059_3072316_-	serine hydroxymethyltransferase	NA	G9I092	Helicoverpa_zea_nudivirus	40.9	1.6e-77
>prophage 233
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3079467	3084472	4190038	tRNA	uncultured_Mediterranean_phage(50.0%)	3	NA	NA
WP_009891137.1|3079467_3080739_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	43.2	1.8e-89
WP_009891139.1|3081555_3083160_-	amidohydrolase	NA	NA	NA	NA	NA
WP_009891141.1|3083545_3084472_+	carbon-nitrogen hydrolase family protein	NA	M1H5W0	Paramecium_bursaria_Chlorella_virus	23.5	1.9e-11
>prophage 234
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3094305	3095820	4190038		Tupanvirus(100.0%)	1	NA	NA
WP_009893738.1|3094305_3095820_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	31.5	4.1e-56
>prophage 235
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3112410	3115369	4190038		Planktothrix_phage(50.0%)	4	NA	NA
WP_009891172.1|3112410_3113157_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.2	5.0e-31
WP_009893741.1|3113170_3113566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009891174.1|3113678_3114701_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_071587381.1|3114697_3115369_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.5	1.2e-26
>prophage 236
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3128525	3129308	4190038		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_003439676.1|3128525_3129308_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.4	2.4e-15
>prophage 237
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3140254	3144202	4190038		Bacillus_virus(50.0%)	3	NA	NA
WP_009891214.1|3140254_3141400_+	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	27.3	3.2e-08
WP_009893745.1|3141489_3143208_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_009891216.1|3143212_3144202_-	ATP-binding cassette domain-containing protein	NA	Q6GZ03	Mycoplasma_phage	33.6	1.1e-22
>prophage 238
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3184063	3184810	4190038		Planktothrix_phage(100.0%)	1	NA	NA
WP_003439795.1|3184063_3184810_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	2.1e-29
>prophage 239
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3189024	3199435	4190038	transposase	Bacillus_virus(20.0%)	10	NA	NA
WP_009891281.1|3189024_3189903_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.3	3.6e-20
WP_009891283.1|3189895_3190678_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_009891285.1|3190678_3191308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009891287.1|3191702_3192329_-	GyrI-like domain-containing protein	NA	NA	NA	NA	NA
WP_009893755.1|3192404_3193376_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A218KC18	Bacillus_phage	59.1	1.8e-105
WP_009891289.1|3193388_3195488_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A0K2FMK0	Brevibacillus_phage	54.0	3.8e-217
WP_009891291.1|3195965_3196691_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_004453865.1|3196810_3198007_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.6	6.7e-17
WP_009901211.1|3198009_3198252_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_012816358.1|3198316_3199435_-|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.5	1.4e-109
>prophage 240
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3212354	3213743	4190038		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_009891315.1|3212354_3213743_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	42.6	1.7e-96
>prophage 241
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3234010	3234610	4190038		Tetraselmis_virus(100.0%)	1	NA	NA
WP_003432026.1|3234010_3234610_-	SIS domain-containing protein	NA	A0A2P0VNK5	Tetraselmis_virus	37.1	3.9e-26
>prophage 242
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3240937	3241255	4190038		Streptomyces_phage(100.0%)	1	NA	NA
WP_004453775.1|3240937_3241255_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	36.0	3.4e-13
>prophage 243
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3247350	3249894	4190038		Bacillus_phage(100.0%)	2	NA	NA
WP_009891349.1|3247350_3248760_-	hypothetical protein	NA	A0A223LDP1	Bacillus_phage	33.0	5.0e-48
WP_009891351.1|3248763_3249894_-	ATP-binding protein	NA	A0A223LDC9	Bacillus_phage	30.8	8.7e-43
>prophage 244
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3267139	3267892	4190038		Planktothrix_phage(100.0%)	1	NA	NA
WP_003422523.1|3267139_3267892_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.9	1.6e-32
>prophage 245
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3289899	3297108	4190038		Leptospira_phage(50.0%)	6	NA	NA
WP_009893787.1|3289899_3293235_-	DEAD/DEAH box helicase family protein	NA	Q6NDX2	Leptospira_phage	26.6	6.6e-14
WP_003439943.1|3293284_3293713_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003439944.1|3293702_3294083_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_003427235.1|3294115_3294424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009891387.1|3294456_3295641_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_009891388.1|3295644_3297108_-	SAM-dependent DNA methyltransferase	NA	A0A1W6JNK1	Staphylococcus_phage	28.7	4.2e-21
>prophage 246
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3308918	3310073	4190038		Streptococcus_phage(100.0%)	1	NA	NA
WP_009891405.1|3308918_3310073_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	37.4	6.0e-47
>prophage 247
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3326225	3327659	4190038		Pandoravirus(100.0%)	1	NA	NA
WP_009893800.1|3326225_3327659_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	25.2	5.9e-28
>prophage 248
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3340235	3340877	4190038		Synechococcus_phage(100.0%)	1	NA	NA
WP_009893807.1|3340235_3340877_+	aldolase	NA	A0A0E3FKM5	Synechococcus_phage	34.6	2.9e-27
>prophage 249
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3347363	3348482	4190038	transposase	Geobacillus_virus(100.0%)	1	NA	NA
WP_012816380.1|3347363_3348482_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.5	2.8e-110
>prophage 250
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3354759	3356214	4190038		Pandoravirus(100.0%)	1	NA	NA
WP_009893818.1|3354759_3356214_-	family 1 glycosylhydrolase	NA	A0A0B5JD41	Pandoravirus	24.6	8.4e-22
>prophage 251
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3360222	3365633	4190038		Cryptophlebia_leucotreta_granulosis_virus(33.33%)	3	NA	NA
WP_009891463.1|3360222_3361410_-	glucosyltransferase	NA	Q7T5G5	Cryptophlebia_leucotreta_granulosis_virus	27.5	8.1e-07
WP_009893821.1|3361793_3363407_-	recombinase family protein	NA	A6M972	Geobacillus_virus	23.7	2.7e-21
WP_009891468.1|3364553_3365633_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	36.2	2.7e-57
>prophage 252
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3380966	3381638	4190038		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_009891494.1|3380966_3381638_-	beta-phosphoglucomutase	NA	M1I080	Acanthocystis_turfacea_Chlorella_virus	27.7	1.9e-08
>prophage 253
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3394565	3395558	4190038		Mycoplasma_phage(100.0%)	1	NA	NA
WP_009891504.1|3394565_3395558_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	54.3	1.2e-19
>prophage 254
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3400556	3401519	4190038		Streptococcus_phage(100.0%)	1	NA	NA
WP_009891509.1|3400556_3401519_-	YafY family transcriptional regulator	NA	A0A1B0RXM1	Streptococcus_phage	29.8	2.2e-15
>prophage 255
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3411121	3413245	4190038	transposase,integrase	Paenibacillus_phage(66.67%)	3	3406494:3406510	3418796:3418812
3406494:3406510	attL	TATAATAAACATAAAGT	NA	NA	NA	NA
WP_021397345.1|3411121_3411511_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A0C5AEA5	Paenibacillus_phage	58.9	2.7e-36
WP_021397354.1|3411540_3411726_+|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	59.0	2.2e-12
WP_009891519.1|3411952_3413245_-	DUF262 domain-containing protein	NA	A0A0R6PJX3	Moraxella_phage	21.8	5.7e-06
3418796:3418812	attR	ACTTTATGTTTATTATA	NA	NA	NA	NA
>prophage 256
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3418512	3437353	4190038	integrase	Clostridium_botulinum_C_phage(33.33%)	21	3417077:3417093	3438926:3438942
3417077:3417093	attL	TAATAACCTTACAGAAT	NA	NA	NA	NA
WP_009891526.1|3418512_3420498_-	CRISPR-associated helicase/endonuclease Cas3	NA	A0A2R2ZGW0	Clostridioides_phage	23.6	5.5e-24
WP_009891530.1|3420508_3421579_-	DNA repair protein	NA	Q332K3	Clostridium_botulinum_C_phage	47.0	4.9e-80
WP_009893841.1|3421599_3422766_-	hypothetical protein	NA	Q332K7	Clostridium_botulinum_C_phage	42.2	1.7e-33
WP_009891533.1|3422767_3423532_-	CRISPR-associated endoribonuclease Cas6	NA	Q332K8	Clostridium_botulinum_C_phage	45.0	3.4e-51
WP_009891534.1|3423522_3424170_-	CRISPR-associated protein Cas5	NA	Q332K9	Clostridium_botulinum_C_phage	51.4	5.3e-53
WP_009893844.1|3424649_3425777_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_009891535.1|3426049_3426322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071587382.1|3426571_3427906_-	AAA family ATPase	NA	A0A191ZDG5	Pseudoalteromonas_virus	28.0	5.9e-30
WP_009891538.1|3427918_3428662_-	hypothetical protein	NA	A0A0B5D175	Listeria_phage	50.0	5.0e-23
WP_003433761.1|3428683_3428998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009891540.1|3429001_3429202_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_009893845.1|3429348_3430113_+	helix-turn-helix transcriptional regulator	NA	Q786F1	Bacillus_phage	45.6	4.9e-05
WP_025984777.1|3430169_3430367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009891546.1|3430363_3430855_+	helix-turn-helix transcriptional regulator	NA	F6MII3	Haemophilus_phage	38.1	9.1e-05
WP_009891548.1|3430946_3431699_+	Fic family protein	NA	NA	NA	NA	NA
WP_009891550.1|3431688_3432855_+|integrase	site-specific integrase	integrase	A0A0U3U8Y8	Bacillus_phage	32.2	6.5e-33
WP_009891551.1|3432970_3433201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032508286.1|3433206_3433686_-	DUF3990 domain-containing protein	NA	NA	NA	NA	NA
WP_009891555.1|3433685_3433901_-	DUF3791 domain-containing protein	NA	NA	NA	NA	NA
WP_009893846.1|3434811_3435717_+	P63C domain-containing protein	NA	Q8HA04	Enterobacteria_phage	45.5	5.3e-59
WP_003421925.1|3436897_3437353_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	54.5	2.6e-38
3438926:3438942	attR	ATTCTGTAAGGTTATTA	NA	NA	NA	NA
>prophage 257
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3442407	3447530	4190038		Anomala_cuprea_entomopoxvirus(50.0%)	3	NA	NA
WP_009891564.1|3442407_3443280_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.1	2.4e-24
WP_009893847.1|3443809_3444301_-	YfbM family protein	NA	NA	NA	NA	NA
WP_009893856.1|3445394_3447530_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.4	7.3e-83
>prophage 258
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3453335	3454628	4190038		Streptococcus_phage(100.0%)	1	NA	NA
WP_009893861.1|3453335_3454628_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	68.0	3.1e-161
>prophage 259
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3463333	3470216	4190038		Acinetobacter_phage(50.0%)	4	NA	NA
WP_009891588.1|3463333_3465895_-	selenium-dependent xanthine dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	30.8	4.4e-10
WP_009891590.1|3465888_3467280_-	dihydropyrimidinase	NA	NA	NA	NA	NA
WP_009891591.1|3467562_3468672_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_009891593.1|3468863_3470216_-	purine permease	NA	Q9KX94	Enterobacteria_phage	30.6	5.5e-36
>prophage 260
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3486118	3486868	4190038		Planktothrix_phage(100.0%)	1	NA	NA
WP_009891612.1|3486118_3486868_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.2	2.7e-32
>prophage 261
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3491414	3507475	4190038		Clostridium_phage(14.29%)	14	NA	NA
WP_009891622.1|3491414_3492341_-	conserved phage C-terminal domain-containing protein	NA	Q8SBM0	Clostridium_phage	43.9	6.5e-12
WP_009891624.1|3492950_3493871_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_009891626.1|3493956_3496377_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	34.5	1.4e-143
WP_009891628.1|3496376_3497399_+	serine hydrolase	NA	NA	NA	NA	NA
WP_009891631.1|3497513_3498260_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009893886.1|3498345_3499596_+	multidrug efflux MFS transporter Cme	NA	D0R099	Streptococcus_phage	30.2	3.0e-36
WP_009893888.1|3500077_3501091_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_009891640.1|3501093_3502122_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_009891642.1|3502121_3502967_-	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	31.9	1.4e-16
WP_009891645.1|3503371_3504502_-	HAMP domain-containing histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.0	2.9e-06
WP_009891647.1|3504498_3505170_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	40.4	1.5e-42
WP_009891649.1|3505383_3506034_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_009891651.1|3506090_3506321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003434301.1|3506881_3507475_+	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	28.7	1.6e-08
>prophage 262
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3515001	3519968	4190038		Bacillus_virus(50.0%)	3	NA	NA
WP_003438780.1|3515001_3515763_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.3	3.7e-29
WP_009891662.1|3515778_3517314_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_009893899.1|3517727_3519968_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	33.8	1.9e-137
>prophage 263
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3536917	3537457	4190038		uncultured_virus(100.0%)	1	NA	NA
WP_009891688.1|3536917_3537457_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	30.5	2.3e-09
>prophage 264
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3542256	3542892	4190038		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_003422086.1|3542256_3542892_-	single-stranded DNA-binding protein	NA	A0A2H4J8K3	uncultured_Caudovirales_phage	52.9	1.6e-54
>prophage 265
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3555107	3556366	4190038		Tupanvirus(50.0%)	2	NA	NA
WP_009891705.1|3555107_3555872_-	polysaccharide deacetylase family protein	NA	A0A2K9LAZ4	Tupanvirus	24.9	9.8e-06
WP_003422115.1|3556162_3556366_+	alpha/beta-type small acid-soluble spore protein	NA	G3MAF8	Bacillus_virus	48.4	6.0e-11
>prophage 266
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3561976	3565778	4190038	tRNA	Clostridioides_phage(50.0%)	2	NA	NA
WP_009893916.1|3561976_3562687_-	two-component system response regulator RgaR	NA	A0A2R2ZGH8	Clostridioides_phage	36.4	4.5e-37
WP_009893918.1|3563111_3565778_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	43.0	1.0e-174
>prophage 267
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3570522	3571287	4190038		Bacillus_phage(100.0%)	1	NA	NA
WP_003432349.1|3570522_3571287_-	phosphate ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	33.5	1.5e-14
>prophage 268
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3574666	3581424	4190038		Bacillus_phage(80.0%)	6	NA	NA
WP_009891724.1|3574666_3575554_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.4	6.7e-22
WP_009891726.1|3575698_3576814_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	29.0	6.6e-19
WP_009891729.1|3576849_3577548_-	VanR-ABDEGLN family response regulator transcription factor	NA	W8CYM9	Bacillus_phage	38.5	2.6e-37
WP_009891737.1|3577929_3578610_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	27.3	2.1e-15
WP_009893921.1|3578659_3580675_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_009891739.1|3580746_3581424_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	28.3	9.9e-26
>prophage 269
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3585263	3585929	4190038		Bacillus_virus(100.0%)	1	NA	NA
WP_004453991.1|3585263_3585929_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	43.2	8.5e-22
>prophage 270
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3596505	3602340	4190038		Streptococcus_phage(33.33%)	4	NA	NA
WP_009891755.1|3596505_3597309_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	36.3	9.0e-34
WP_009891756.1|3597633_3600003_-	glycyl radical protein	NA	A0A2I6PFP1	Proteus_phage	41.5	2.3e-05
WP_009891757.1|3600007_3600916_-	glycyl-radical enzyme activating protein	NA	NA	NA	NA	NA
WP_003435637.1|3601260_3602340_-	trypsin-like peptidase domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	25.7	3.3e-15
>prophage 271
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3619545	3625040	4190038	protease	Moraxella_phage(33.33%)	5	NA	NA
WP_009893936.1|3619545_3621909_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	44.5	3.7e-176
WP_003417110.1|3622088_3622601_+	chromate transporter	NA	NA	NA	NA	NA
WP_003427941.1|3622588_3623116_+	chromate transporter	NA	NA	NA	NA	NA
WP_003417105.1|3623186_3624437_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.1	6.1e-146
WP_003417102.1|3624455_3625040_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	58.8	9.3e-57
>prophage 272
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3628647	3630672	4190038		Ralstonia_phage(100.0%)	1	NA	NA
WP_009891779.1|3628647_3630672_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	37.6	3.8e-113
>prophage 273
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3641123	3656974	4190038		Clostridium_phage(25.0%)	16	NA	NA
WP_003437316.1|3641123_3641783_-	two-component system response regulator CprR	NA	W8CYM9	Bacillus_phage	33.6	4.2e-29
WP_009893944.1|3642093_3642723_+	DUF3786 domain-containing protein	NA	NA	NA	NA	NA
WP_009891800.1|3642790_3643624_+	prenyltransferase	NA	NA	NA	NA	NA
WP_009891802.1|3643719_3644508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009891804.1|3644508_3645381_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.3	6.8e-27
WP_012816417.1|3645395_3647174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009891808.1|3647250_3647832_-	accessory gene regulator B family protein	NA	X5JB40	Clostridium_phage	30.4	3.8e-18
WP_003437290.1|3647890_3648031_-	cyclic lactone autoinducer peptide	NA	NA	NA	NA	NA
WP_009893947.1|3648042_3649359_-	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	32.9	7.5e-54
WP_009893949.1|3649352_3650063_-	response regulator transcription factor	NA	A0A2R2ZGH8	Clostridioides_phage	36.2	1.3e-28
WP_009891809.1|3650500_3651076_-	DUF1062 domain-containing protein	NA	NA	NA	NA	NA
WP_009891811.1|3651368_3651647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009891813.1|3651955_3652717_-	epoxyqueuosine reductase	NA	NA	NA	NA	NA
WP_074014308.1|3652885_3654925_-	collagen-like exosporium glycoprotein BclA3	NA	A0A285PXU9	Cedratvirus	64.5	1.6e-39
WP_009891817.1|3654991_3656068_-	glycosyltransferase family 2 protein	NA	A0A1V0SAJ8	Catovirus	25.1	6.6e-16
WP_003436212.1|3656389_3656974_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	51.3	3.6e-48
>prophage 274
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3662994	3665518	4190038		Klosneuvirus(50.0%)	2	NA	NA
WP_009893954.1|3662994_3664533_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	28.2	7.7e-50
WP_021397452.1|3664804_3665518_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.1	6.3e-31
>prophage 275
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3669268	3670264	4190038		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_009893959.1|3669268_3670264_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.7	1.4e-15
>prophage 276
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3677204	3685772	4190038		Bacillus_phage(50.0%)	8	NA	NA
WP_009889844.1|3677204_3677843_+	hypothetical protein	NA	A0A1V0DZZ4	Clostridioides_phage	76.0	4.1e-13
WP_009889843.1|3678320_3679997_-	recombinase family protein	NA	A0A1B1P7M0	Bacillus_phage	28.6	9.9e-35
WP_003426199.1|3680097_3680250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003426191.1|3680738_3681149_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_009889841.1|3681672_3682992_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_009889840.1|3682988_3683642_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.2	3.1e-24
WP_009893965.1|3683739_3685116_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003426165.1|3685115_3685772_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.1	7.6e-23
>prophage 277
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3695522	3708001	4190038		Erysipelothrix_phage(25.0%)	5	NA	NA
WP_009889816.1|3695522_3695753_-	helix-turn-helix transcriptional regulator	NA	A0A2K5B261	Erysipelothrix_phage	54.8	3.4e-10
WP_010826392.1|3695892_3696552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009893973.1|3696594_3705324_-	DEAD/DEAH box helicase family protein	NA	A0A248SL14	Klebsiella_phage	35.8	1.3e-274
WP_004804477.1|3705406_3706210_-	KilA-N domain-containing protein	NA	Q4ZC41	Staphylococcus_virus	54.6	1.4e-82
WP_009893975.1|3706294_3708001_-	DNA topoisomerase 3	NA	A0A2H4UU47	Bodo_saltans_virus	22.7	5.2e-15
>prophage 278
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3714339	3714729	4190038		Streptococcus_phage(100.0%)	1	NA	NA
WP_009888260.1|3714339_3714729_-	PrgI family protein	NA	E4ZFJ8	Streptococcus_phage	81.5	2.8e-49
>prophage 279
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3718855	3721898	4190038		Bacillus_virus(50.0%)	3	NA	NA
WP_009891897.1|3718855_3719878_-	hypothetical protein	NA	K4LP10	Bacillus_virus	38.0	5.9e-22
WP_009891898.1|3719963_3720245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009891900.1|3720263_3721898_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	45.1	3.0e-105
>prophage 280
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3725052	3731343	4190038		Streptococcus_phage(66.67%)	4	NA	NA
WP_003436251.1|3725052_3728622_-	DNA polymerase III subunit alpha	NA	A0A0K1Y8F0	Streptomyces_phage	39.7	2.9e-217
WP_003436252.1|3728778_3729726_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	32.1	1.2e-34
WP_003416968.1|3729742_3730168_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_009891913.1|3730236_3731343_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	35.8	1.6e-44
>prophage 281
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3741376	3743173	4190038		Phaeocystis_pouchetii_virus(100.0%)	1	NA	NA
WP_009891931.1|3741376_3743173_-	mannonate oxidoreductase	NA	F2QAF8	Phaeocystis_pouchetii_virus	29.2	5.1e-13
>prophage 282
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3746391	3749217	4190038		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_003436266.1|3746391_3749217_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.6	0.0e+00
>prophage 283
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3755809	3756880	4190038		Bacillus_virus(100.0%)	1	NA	NA
WP_009891942.1|3755809_3756880_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.8	1.0e-29
>prophage 284
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3804478	3818310	4190038	transposase	Clostridioides_phage(81.82%)	16	NA	NA
WP_009888243.1|3804478_3805618_+	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	91.8	4.9e-195
WP_009888245.1|3805950_3806526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888246.1|3806536_3806725_+	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	96.8	5.3e-22
WP_009888247.1|3806919_3807477_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	97.8	4.1e-94
WP_012816430.1|3807776_3808520_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	92.3	4.3e-131
WP_021396478.1|3808715_3808934_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	94.4	6.8e-37
WP_012816431.1|3808973_3809516_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	95.0	8.3e-92
WP_009888251.1|3811344_3811788_-	hypothetical protein	NA	A0A1V0DZZ2	Clostridioides_phage	82.6	4.3e-62
WP_009888252.1|3812005_3812449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888253.1|3812470_3812788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012816432.1|3812977_3813640_-	DUF4367 domain-containing protein	NA	A0A1V0DZZ4	Clostridioides_phage	76.2	4.4e-87
WP_009888255.1|3813671_3814214_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1V0DZZ1	Clostridioides_phage	96.7	3.8e-89
WP_009888256.1|3814453_3814636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888257.1|3814663_3815275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012816433.1|3815751_3816966_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	7.9e-50
WP_003437815.1|3817152_3818310_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.5	8.4e-17
>prophage 285
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3823305	3825135	4190038		Lactobacillus_phage(50.0%)	3	NA	NA
WP_003421356.1|3823305_3823689_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A2K9V5D0	Lactobacillus_phage	41.9	2.6e-15
WP_003421359.1|3823657_3823945_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_003437830.1|3823977_3825135_-	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	30.5	5.6e-29
>prophage 286
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3834174	3838593	4190038		Bacillus_phage(33.33%)	6	NA	NA
WP_003421374.1|3834174_3834612_-	dCMP deaminase	NA	A7KUY9	Bacillus_phage	43.4	3.2e-25
WP_009892040.1|3834837_3835653_-	EF2563 family selenium-dependent molybdenum hydroxylase system protein	NA	NA	NA	NA	NA
WP_003437840.1|3835952_3836582_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003437841.1|3836617_3837070_-	ribose 5-phosphate isomerase B	NA	NA	NA	NA	NA
WP_003437844.1|3837086_3837536_-	low molecular weight protein arginine phosphatase	NA	A0A2H4PQT9	Staphylococcus_phage	37.6	6.2e-08
WP_009892045.1|3837552_3838593_-	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	38.4	5.9e-54
>prophage 287
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3844899	3845865	4190038		Bacillus_phage(100.0%)	1	NA	NA
WP_009892053.1|3844899_3845865_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	53.0	3.1e-81
>prophage 288
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3853170	3853449	4190038		Bacillus_phage(100.0%)	1	NA	NA
WP_003421415.1|3853170_3853449_-	HU family DNA-binding protein	NA	A0A1P8CWT5	Bacillus_phage	55.6	4.8e-19
>prophage 289
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3856825	3861901	4190038		Paenibacillus_phage(50.0%)	3	NA	NA
WP_009892063.1|3856825_3857365_-	stage V sporulation protein T	NA	A0A2I7SC16	Paenibacillus_phage	69.2	3.5e-10
WP_009892066.1|3857488_3858484_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_009894034.1|3858514_3861901_-	transcription-repair coupling factor	NA	A0A068EU29	Bacillus_phage	26.6	8.8e-06
>prophage 290
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3875187	3877612	4190038		Hokovirus(50.0%)	2	NA	NA
WP_003421448.1|3875187_3876138_-	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	37.2	8.9e-49
WP_009892083.1|3876232_3877612_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A1V0SB89	Catovirus	36.1	2.8e-27
>prophage 291
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3891692	3896319	4190038		Planktothrix_phage(33.33%)	5	NA	NA
WP_003427697.1|3891692_3892688_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	34.8	1.7e-26
WP_009894043.1|3892688_3893525_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_009894044.1|3893528_3894698_-	alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase	NA	NA	NA	NA	NA
WP_009892101.1|3894698_3895412_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.2	1.6e-13
WP_009894050.1|3895452_3896319_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	26.2	9.7e-10
>prophage 292
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3900446	3912904	4190038	tRNA	Bacillus_virus(40.0%)	13	NA	NA
WP_009894056.1|3900446_3902384_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	34.0	2.2e-102
WP_003421489.1|3902779_3903301_-	spore maturation protein	NA	NA	NA	NA	NA
WP_003427659.1|3903316_3903901_-	spore maturation protein A	NA	NA	NA	NA	NA
WP_003427657.1|3904032_3905463_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	54.5	9.1e-138
WP_003421494.1|3905499_3905928_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003435869.1|3906115_3906820_-	HDIG domain-containing protein	NA	NA	NA	NA	NA
WP_003435873.1|3906842_3907676_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	44.6	3.6e-54
WP_009892111.1|3907676_3908423_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_003427637.1|3908500_3909394_-	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_003435878.1|3909390_3910326_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_009892113.1|3910328_3911018_-	thymidylate kinase	NA	G3MB74	Bacillus_virus	38.1	2.0e-29
WP_009892114.1|3911148_3912558_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003427633.1|3912712_3912904_-	DUF378 domain-containing protein	NA	A0A2L2DKC6	Acanthamoeba_polyphaga_mimivirus	52.8	5.4e-06
>prophage 293
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3918676	3920206	4190038	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_003434963.1|3918676_3920206_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	40.3	2.6e-90
>prophage 294
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3925728	3927699	4190038	protease	Ostreococcus_tauri_virus(100.0%)	1	NA	NA
WP_009892124.1|3925728_3927699_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	H8ZJI5	Ostreococcus_tauri_virus	48.1	5.7e-106
>prophage 295
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3930756	3931242	4190038		Bacillus_phage(100.0%)	1	NA	NA
WP_009892129.1|3930756_3931242_-	cell wall hydrolase	NA	A0A172JHR8	Bacillus_phage	37.5	1.0e-16
>prophage 296
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3944816	3945386	4190038		Clostridium_phage(100.0%)	1	NA	NA
WP_003426023.1|3944816_3945386_-	recombinase family protein	NA	A0A0A8WIK3	Clostridium_phage	61.6	2.2e-58
>prophage 297
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3952062	3954494	4190038		Planktothrix_phage(33.33%)	3	NA	NA
WP_003426034.1|3952062_3952749_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	3.6e-31
WP_009892170.1|3952831_3953821_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	21.8	4.2e-09
WP_003434895.1|3953807_3954494_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.1	3.9e-30
>prophage 298
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3958392	3959442	4190038		Halovirus(100.0%)	1	NA	NA
WP_003429883.1|3958392_3959442_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.8	1.1e-58
>prophage 299
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3962958	3964002	4190038		Halovirus(100.0%)	1	NA	NA
WP_009892176.1|3962958_3964002_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	37.1	1.8e-50
>prophage 300
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3972531	3976105	4190038	tRNA	Bacillus_phage(66.67%)	4	NA	NA
WP_009894075.1|3972531_3973713_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	29.5	6.6e-25
WP_003435805.1|3973702_3974395_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	37.3	1.5e-40
WP_003435804.1|3974528_3975245_-	M15 family metallopeptidase	NA	NA	NA	NA	NA
WP_009894078.1|3975370_3976105_+|tRNA	tRNA 2-thiocytidine biosynthesis protein TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	35.4	3.1e-33
>prophage 301
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3981667	3982396	4190038		Planktothrix_phage(100.0%)	1	NA	NA
WP_003429190.1|3981667_3982396_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	28.1	6.9e-17
>prophage 302
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	3990035	4008136	4190038		Streptococcus_phage(85.71%)	22	NA	NA
WP_009892195.1|3990035_3990359_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	73.5	1.7e-39
WP_009892197.1|3990373_3990757_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	6.3e-38
WP_009892199.1|3990852_3991266_+	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_009892201.1|3991372_3991831_+	VOC family protein	NA	NA	NA	NA	NA
WP_009892206.1|3991855_3992398_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
WP_012816449.1|3992433_3992961_+	YcxB family protein	NA	NA	NA	NA	NA
WP_012816450.1|3993070_3994465_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	66.8	1.3e-178
WP_009892210.1|3994744_3995866_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	62.7	1.3e-134
WP_009892216.1|3995872_3996007_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_006354966.1|3996007_3996229_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	1.2e-28
WP_009892220.1|3996548_3997187_+	chloramphenicol acetyltransferase CAT	NA	G3CFL0	Escherichia_phage	35.3	7.6e-36
WP_009892222.1|3997263_3997452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009892224.1|3997472_3997970_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	41.2	1.3e-27
WP_009892226.1|3997985_3998489_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	47.6	4.4e-39
WP_009892227.1|3998601_3998991_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.8	8.1e-49
WP_009892228.1|3998977_4001410_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
WP_009892229.1|4001409_4003545_+	YtxH domain-containing protein	NA	A0A1S5SF30	Streptococcus_phage	58.6	1.3e-177
WP_009892230.1|4003541_4004549_+	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	67.3	6.4e-130
WP_009892232.1|4004564_4005458_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	53.0	1.6e-79
WP_009892234.1|4005670_4006528_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_009892236.1|4006605_4007187_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009892238.1|4007290_4008136_+	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	28.8	3.6e-17
>prophage 303
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	4011857	4016768	4190038	transposase,integrase	Streptococcus_phage(50.0%)	4	4009616:4009629	4021178:4021191
4009616:4009629	attL	CTTAAATTTGCTGC	NA	NA	NA	NA
WP_009892253.1|4011857_4013039_+|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	65.5	4.2e-149
WP_009892255.1|4013378_4014191_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_071587385.1|4014266_4015502_-	potassium/proton antiporter	NA	NA	NA	NA	NA
WP_012816456.1|4015649_4016768_-|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.2	2.4e-109
4021178:4021191	attR	CTTAAATTTGCTGC	NA	NA	NA	NA
>prophage 304
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	4022968	4023586	4190038		Planktothrix_phage(100.0%)	1	NA	NA
WP_009892262.1|4022968_4023586_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.5	6.7e-21
>prophage 305
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	4027824	4028424	4190038		Acinetobacter_phage(100.0%)	1	NA	NA
WP_009892271.1|4027824_4028424_-	SIS domain-containing protein	NA	E5EYK6	Acinetobacter_phage	27.6	2.7e-11
>prophage 306
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	4049341	4058153	4190038		Paenibacillus_phage(20.0%)	7	NA	NA
WP_003435698.1|4049341_4050139_-	MBL fold metallo-hydrolase	NA	A0A0C5AFC1	Paenibacillus_phage	37.9	7.8e-38
WP_009892302.1|4050240_4051704_-	M1 family metallopeptidase	NA	NA	NA	NA	NA
WP_003429260.1|4051828_4052887_+	DnaD domain protein	NA	Q24LE6	Clostridium_phage	48.6	2.6e-09
WP_009892306.1|4052895_4053888_+	ATP-binding protein	NA	A0A2K9V3L7	Faecalibacterium_phage	32.0	1.6e-11
WP_009894112.1|4054940_4056230_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	36.5	3.6e-77
WP_003429265.1|4056311_4056620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003420541.1|4056824_4058153_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	47.6	3.7e-109
>prophage 307
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	4062299	4062734	4190038		Clostridium_phage(100.0%)	1	NA	NA
WP_003420524.1|4062299_4062734_-	single-stranded DNA-binding protein	NA	A0A0A8WIG9	Clostridium_phage	75.0	3.4e-56
>prophage 308
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	4070105	4071799	4190038		Natrialba_phage(50.0%)	2	NA	NA
WP_003420496.1|4070105_4070879_-	ParA family protein	NA	Q8JL10	Natrialba_phage	30.2	2.8e-24
WP_003429292.1|4071013_4071799_-	nucleoid occlusion protein	NA	S5VSZ7	Leptospira_phage	33.8	4.8e-16
>prophage 309
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	4077503	4089634	4190038		Bacillus_virus(33.33%)	14	NA	NA
WP_009892330.1|4077503_4077755_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	55.9	7.4e-19
WP_003429302.1|4077786_4078131_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003420485.1|4078208_4078346_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_162835941.1|4079001_4080324_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003420481.1|4080565_4081672_+	DNA polymerase III subunit beta	NA	D0R7I4	Paenibacillus_phage	30.4	4.7e-09
WP_009892333.1|4081808_4082015_+	S4 domain-containing protein YaaA	NA	NA	NA	NA	NA
WP_003429303.1|4082032_4083148_+	DNA replication/repair protein RecF	NA	D7RWF8	Brochothrix_phage	29.1	1.1e-05
WP_003434229.1|4083148_4085050_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	48.8	2.6e-156
WP_009892337.1|4085069_4087496_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	34.2	2.3e-109
WP_003420471.1|4087564_4087861_+	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_003420469.1|4087860_4088121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009894128.1|4088132_4088450_+	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_003429308.1|4088474_4088861_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003420464.1|4088860_4089634_+	SigB/SigF/SigG family RNA polymerase sigma factor	NA	A0A0A0RV91	Bacillus_phage	30.8	2.9e-21
>prophage 310
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	4102107	4106262	4190038	tRNA	uncultured_Mediterranean_phage(50.0%)	3	NA	NA
WP_009887725.1|4102107_4103379_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	46.3	2.5e-86
WP_003421624.1|4103698_4104154_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_009887749.1|4104624_4106262_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	37.7	8.4e-55
>prophage 311
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	4127093	4129541	4190038	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_003425582.1|4127093_4129541_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A1C3S747	Escherichia_phage	40.8	9.8e-132
>prophage 312
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	4145842	4147573	4190038		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_009887814.1|4145842_4147573_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.2	7.6e-38
>prophage 313
NZ_CP025044	Clostridioides difficile strain R0104a chromosome, complete genome	4190038	4159330	4188966	4190038	tRNA	Bacillus_phage(18.18%)	27	NA	NA
WP_009887833.1|4159330_4160776_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	41.0	1.1e-109
WP_009892542.1|4161215_4162697_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003421202.1|4162917_4163073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009887837.1|4163217_4164615_+|tRNA	cysteine--tRNA ligase	tRNA	A0A161HRB7	Powai_lake_megavirus	28.4	6.7e-53
WP_003435577.1|4164599_4165013_+	RNase3 domain protein	NA	NA	NA	NA	NA
WP_009887841.1|4165520_4166351_+	thymidylate synthase	NA	A0A0H3V0R8	Geobacillus_virus	52.5	4.9e-75
WP_009887849.1|4166363_4166858_+	dihydrofolate reductase	NA	R4JEX4	Bacillus_phage	40.4	8.8e-24
WP_009887851.1|4166884_4168261_+	SIR2 family protein	NA	NA	NA	NA	NA
WP_009892546.1|4168236_4169337_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_079254688.1|4169379_4169805_+	FAD-dependent thymidylate synthase	NA	K9MCR9	Sulfolobus_virus	36.4	1.4e-06
WP_009887855.1|4169817_4170555_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_003421194.1|4170557_4171085_+	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_009892548.1|4171149_4171797_+	RNA polymerase sporulation sigma factor SigH	NA	NA	NA	NA	NA
WP_009887863.1|4171870_4173064_+	elongation factor Tu	NA	A0A1V0SC62	Catovirus	28.8	9.6e-08
WP_003421192.1|4173313_4173463_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003429494.1|4173488_4173710_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_009887869.1|4173729_4174272_+	transcription termination/antitermination factor NusG	NA	G3MAW2	Bacillus_virus	30.9	2.1e-10
WP_003421189.1|4174307_4174733_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003421188.1|4174802_4175501_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003421187.1|4175723_4176230_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003421186.1|4176287_4176653_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_003436172.1|4177044_4177833_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	37.2	1.3e-05
WP_100882488.1|4178303_4182020_+	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.4	1.2e-45
WP_009887878.1|4182061_4185547_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	27.9	3.5e-74
WP_003436176.1|4185835_4186258_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_003421180.1|4186380_4186851_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_003429482.1|4186899_4188966_+	elongation factor G	NA	A0A1S5SF82	Streptococcus_phage	27.1	9.9e-61
