The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	0	17405	4110080		Bacillus_virus(16.67%)	14	NA	NA
WP_003421192.1|461_611_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003429494.1|636_858_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003421190.1|877_1420_+	transcription termination/antitermination factor NusG	NA	G3MAW2	Bacillus_virus	30.9	1.6e-10
WP_003421189.1|1458_1884_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003421188.1|1954_2653_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003421187.1|2875_3382_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003421186.1|3439_3805_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_003436172.1|4196_4985_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	37.2	1.3e-05
WP_003436174.1|5455_9172_+	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.8	3.0e-47
WP_003429485.1|9213_12699_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	28.0	2.0e-74
WP_003436176.1|12987_13410_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_003421180.1|13533_14004_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_003436178.1|14052_16119_+	elongation factor G	NA	A0A1S5SF82	Streptococcus_phage	27.0	1.3e-60
WP_009887863.1|16211_17405_+	elongation factor Tu	NA	A0A1V0SC62	Catovirus	28.8	9.6e-08
>prophage 2
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	33736	39167	4110080	tRNA	Planktothrix_phage(33.33%)	7	NA	NA
WP_003435660.1|33736_34570_+	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	30.0	4.6e-17
WP_003435657.1|34557_35424_+	energy-coupling factor transporter ATPase	NA	A0A1V0SE00	Indivirus	30.6	8.2e-17
WP_003427737.1|35417_36221_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_003435654.1|36252_36984_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_003435651.1|37103_37535_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_003421105.1|37563_37956_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_003435644.1|38414_39167_+	N-acetylmuramoyl-L-alanine amidase CwlD	NA	A0A067ZJB6	Vibrio_phage	30.5	4.9e-10
>prophage 3
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	53320	56233	4110080		Clostridium_phage(100.0%)	2	NA	NA
WP_003436320.1|53320_55672_+	anaerobic ribonucleoside triphosphate reductase	NA	A0A0A8WEK0	Clostridium_phage	44.5	4.9e-173
WP_003432598.1|55693_56233_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0A8WJI9	Clostridium_phage	45.3	1.1e-30
>prophage 4
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	77160	80606	4110080		Bacillus_phage(50.0%)	2	NA	NA
WP_011860638.1|77160_78507_+	phosphoglucosamine mutase	NA	A0A127AWJ1	Bacillus_phage	26.1	8.3e-24
WP_003432446.1|78773_80606_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	41.8	1.1e-116
>prophage 5
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	84878	94839	4110080	protease	Clostridium_phage(40.0%)	9	NA	NA
WP_003432452.1|84878_85943_+	stage II sporulation protein D	NA	Q2XU88	Pseudomonas_phage	36.0	4.1e-34
WP_003432453.1|86008_86677_+	M23 family metallopeptidase	NA	NA	NA	NA	NA
WP_003420727.1|86774_87035_+	sporulation transcriptional regulator SpoIIID	NA	M9Q261	Clostridium_phage	58.7	2.1e-16
WP_003420729.1|87231_88251_+	rod shape-determining protein	NA	NA	NA	NA	NA
WP_003420731.1|88266_88695_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_009887970.1|88805_89315_-|protease	spore protease YyaC	protease	A0A0A8WIQ6	Clostridium_phage	40.4	3.8e-30
WP_003432462.1|89743_90937_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	68.3	2.4e-152
WP_100852699.1|91252_92356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003434402.1|92619_94839_+	ATP-dependent RecD-like DNA helicase	NA	A0A0H3UZA5	Geobacillus_virus	32.4	8.7e-71
>prophage 6
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	104637	108434	4110080		Emiliania_huxleyi_virus(50.0%)	2	NA	NA
WP_009895216.1|104637_107313_+	preprotein translocase subunit SecA	NA	V5LQX0	Emiliania_huxleyi_virus	61.4	7.7e-05
WP_095889580.1|107327_108434_+	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	53.4	2.1e-09
>prophage 7
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	116088	117105	4110080	tRNA	Moraxella_phage(100.0%)	1	NA	NA
WP_011860650.1|116088_117105_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	44.1	1.0e-71
>prophage 8
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	126394	127057	4110080		Planktothrix_phage(100.0%)	1	NA	NA
WP_003434446.1|126394_127057_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.3	1.3e-30
>prophage 9
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	130485	133178	4110080		Bacillus_phage(66.67%)	3	NA	NA
WP_009901675.1|130485_131172_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.2	5.0e-25
WP_003434453.1|131182_132424_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	29.4	4.2e-22
WP_003434455.1|132494_133178_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	4.8e-36
>prophage 10
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	143931	145845	4110080		Tupanvirus(100.0%)	1	NA	NA
WP_003434478.1|143931_145845_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	32.4	2.6e-63
>prophage 11
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	152865	154053	4110080		Orpheovirus(100.0%)	1	NA	NA
WP_003434490.1|152865_154053_-	class I SAM-dependent methyltransferase	NA	A0A2I2L5L3	Orpheovirus	33.8	5.5e-48
>prophage 12
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	159725	164259	4110080		Clostridium_phage(33.33%)	5	NA	NA
WP_003434503.1|159725_160748_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	55.8	4.3e-33
WP_003434504.1|161043_161964_+	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	42.5	7.1e-59
WP_003434506.1|162002_162695_+	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA	NA
WP_003434510.1|162687_163590_+	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003420885.1|163674_164259_+	orotate phosphoribosyltransferase	NA	Q58MW1	Prochlorococcus_phage	28.1	2.2e-05
>prophage 13
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	170430	176562	4110080		uncultured_virus(50.0%)	6	NA	NA
WP_003420907.1|170430_170715_+	co-chaperone GroES	NA	A0A221S4A8	uncultured_virus	42.6	1.4e-13
WP_003435012.1|170747_172376_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	55.7	5.8e-157
WP_003435015.1|172637_173378_+	nickel pincer cofactor biosynthesis protein LarB	NA	A0A288TYA6	Enterococcus_phage	44.8	4.0e-20
WP_003435017.1|173461_174196_+	nickel pincer cofactor biosynthesis protein LarC	NA	NA	NA	NA	NA
WP_003435019.1|174225_174645_+	DUF111 family protein	NA	NA	NA	NA	NA
WP_003425341.1|175026_176562_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.7	1.2e-23
>prophage 14
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	180691	184120	4110080		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_003435030.1|180691_184120_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	37.6	4.8e-177
>prophage 15
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	194169	212288	4110080	transposase	Synechococcus_phage(20.0%)	16	NA	NA
WP_003435056.1|194169_194568_+|transposase	IS200/IS605 family transposase	transposase	A0A0A8WIU6	Clostridium_phage	96.2	2.5e-69
WP_003435058.1|194564_195728_+|transposase	transposase	transposase	A0A0A8WI33	Clostridium_phage	99.0	1.7e-219
WP_003436071.1|196111_196624_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.1	7.8e-84
WP_003425290.1|197073_197550_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
WP_003420966.1|197555_198254_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
WP_003425288.1|198265_199633_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
WP_003425286.1|199626_200703_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
WP_003436064.1|200696_201290_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
WP_003436063.1|201282_202815_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
WP_003436062.1|202825_204076_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_021368880.1|204100_207907_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.5	1.0e-31
WP_003436060.1|208112_208985_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	1.7e-14
WP_003436059.1|209093_209963_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	61.1	8.1e-97
WP_003436058.1|210011_210569_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.6	1.3e-47
WP_021358779.1|210606_211590_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.0	1.1e-78
WP_009895321.1|211619_212288_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	46.9	4.1e-24
>prophage 16
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	230554	231646	4110080		Moumouvirus(100.0%)	1	NA	NA
WP_021364180.1|230554_231646_+	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2P1ELT3	Moumouvirus	32.9	3.7e-38
>prophage 17
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	250867	251569	4110080		Bacillus_phage(100.0%)	1	NA	NA
WP_003435969.1|250867_251569_+	FliA/WhiG family RNA polymerase sigma factor	NA	A0A0Y0AU18	Bacillus_phage	25.6	2.8e-07
>prophage 18
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	256604	258542	4110080		Catovirus(100.0%)	1	NA	NA
WP_003435963.1|256604_258542_+	molecular chaperone HtpG	NA	A0A1V0SAD6	Catovirus	32.0	4.6e-60
>prophage 19
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	276239	278456	4110080		Clostridium_phage(50.0%)	3	NA	NA
WP_003435932.1|276239_277334_+	helix-turn-helix transcriptional regulator	NA	A0A090D830	Clostridium_phage	33.7	1.2e-07
WP_003425157.1|277338_277539_+	PLDc N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_021368881.1|277538_278456_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	36.3	6.2e-31
>prophage 20
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	285296	286808	4110080		Staphylococcus_phage(100.0%)	1	NA	NA
WP_003435916.1|285296_286808_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	2.2e-17
>prophage 21
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	297176	299952	4110080		Streptococcus_phage(100.0%)	2	NA	NA
WP_003437587.1|297176_297542_+	helix-turn-helix domain-containing protein	NA	E4ZFI8	Streptococcus_phage	40.4	7.2e-15
WP_003437591.1|297564_299952_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	34.9	6.6e-117
>prophage 22
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	308229	310936	4110080		Staphylococcus_phage(50.0%)	3	NA	NA
WP_003434214.1|308229_309153_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	44.4	4.3e-40
WP_003434209.1|309309_310233_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_003434208.1|310234_310936_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.6	9.6e-32
>prophage 23
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	316279	322304	4110080		Acanthocystis_turfacea_Chlorella_virus(33.33%)	5	NA	NA
WP_009895392.1|316279_317098_+	energy-coupling factor ABC transporter ATP-binding protein	NA	M1HV27	Acanthocystis_turfacea_Chlorella_virus	27.8	8.6e-08
WP_009888186.1|317352_319617_+	DUF3553 domain-containing protein	NA	A7KV33	Bacillus_phage	44.5	6.7e-143
WP_003434194.1|319633_320932_+	M18 family aminopeptidase	NA	NA	NA	NA	NA
WP_003434193.1|320962_321715_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003434191.1|321779_322304_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	45.6	4.2e-24
>prophage 24
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	331111	331783	4110080		Planktothrix_phage(100.0%)	1	NA	NA
WP_003434821.1|331111_331783_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	2.6e-34
>prophage 25
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	360227	361226	4110080		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_003431407.1|360227_361226_-	D-2-hydroxyacid dehydrogenase	NA	M1I4S0	Paramecium_bursaria_Chlorella_virus	34.8	3.7e-45
>prophage 26
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	373946	384759	4110080		Erysipelothrix_phage(25.0%)	6	NA	NA
WP_003434581.1|373946_375308_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	34.8	6.8e-58
WP_100852712.1|375705_377769_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_003434587.1|377765_379631_+	ATP-dependent helicase	NA	A0A068EQC7	Bacillus_phage	22.2	5.3e-13
WP_074049750.1|380593_381082_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	61.0	8.9e-53
WP_003434602.1|381595_381823_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003434605.1|381819_384759_+	N-6 DNA methylase	NA	A0A2R2ZGH5	Clostridioides_phage	21.7	4.6e-11
>prophage 27
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	390637	392571	4110080		Clostridium_phage(66.67%)	3	NA	NA
WP_003426228.1|390637_390841_+	DUF4236 domain-containing protein	NA	A0A0A8WIL0	Clostridium_phage	74.1	1.5e-14
WP_003434650.1|391011_392172_+	cell wall-binding protein Cwp27	NA	A0A2R2ZGK6	Clostridioides_phage	49.5	2.9e-70
WP_003434654.1|392430_392571_+	hypothetical protein	NA	A0A0A8WIQ0	Clostridium_phage	90.7	2.3e-14
>prophage 28
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	406737	407574	4110080		Streptococcus_phage(100.0%)	1	NA	NA
WP_021368900.1|406737_407574_+	helix-turn-helix transcriptional regulator	NA	A0A1B0RXG1	Streptococcus_phage	34.3	1.7e-06
>prophage 29
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	411609	412293	4110080		Planktothrix_phage(100.0%)	1	NA	NA
WP_003434696.1|411609_412293_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.2	7.1e-32
>prophage 30
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	416311	416974	4110080		Bacillus_phage(100.0%)	1	NA	NA
WP_003434705.1|416311_416974_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.3	4.8e-25
>prophage 31
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	432121	439935	4110080		Bacillus_phage(50.0%)	7	NA	NA
WP_003434737.1|432121_432826_+	lantibiotic protection ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.6	4.7e-55
WP_003434740.1|432822_433593_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
WP_003434743.1|433589_434366_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
WP_003434748.1|434420_435113_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.4	4.1e-27
WP_003434751.1|435131_436556_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	31.6	3.7e-30
WP_003434753.1|436795_439264_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003434757.1|439266_439935_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	2.7e-36
>prophage 32
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	443608	447399	4110080		Acanthocystis_turfacea_Chlorella_virus(50.0%)	4	NA	NA
WP_003434776.1|443608_444436_-	carbon-nitrogen hydrolase family protein	NA	M1I268	Acanthocystis_turfacea_Chlorella_virus	29.0	1.4e-21
WP_003417824.1|444817_445138_+	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA	NA
WP_003426355.1|445270_445951_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
WP_003434794.1|446346_447399_+	galactitol-1-phosphate 5-dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	31.7	1.8e-13
>prophage 33
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	450563	451917	4110080		Clostridioides_phage(100.0%)	2	NA	NA
WP_003434807.1|450563_451703_+	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	94.2	1.5e-199
WP_003426367.1|451728_451917_+	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	88.7	1.4e-19
>prophage 34
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	457096	462164	4110080		Clostridioides_phage(33.33%)	5	NA	NA
WP_003439052.1|457096_457807_+	response regulator transcription factor	NA	A0A2R2ZGH8	Clostridioides_phage	36.3	1.4e-25
WP_003439054.1|457945_458074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021358864.1|458067_459387_+	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	38.1	7.2e-73
WP_003439058.1|459852_461151_+	radical SAM protein	NA	NA	NA	NA	NA
WP_003439060.1|461147_462164_+	radical SAM protein	NA	D5GV91	Campylobacter_virus	29.7	1.6e-08
>prophage 35
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	467494	471554	4110080		Planktothrix_phage(33.33%)	3	NA	NA
WP_021358866.1|467494_468169_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.8	1.9e-29
WP_003439072.1|468152_469895_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.8	2.5e-36
WP_003439074.1|470309_471554_-	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	31.1	1.8e-09
>prophage 36
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	478046	484618	4110080		Hokovirus(50.0%)	4	NA	NA
WP_003439079.1|478046_479654_+	DUF4118 domain-containing protein	NA	A0A1V0SGX0	Hokovirus	26.8	4.6e-13
WP_003439080.1|479644_480349_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011860847.1|480635_480794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003439082.1|481519_484618_+	bifunctional diguanylate cyclase/phosphodiesterase	NA	G3MA91	Bacillus_virus	29.3	1.7e-08
>prophage 37
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	493979	501218	4110080		Streptococcus_phage(25.0%)	8	NA	NA
WP_003439096.1|493979_494891_+	YafY family transcriptional regulator	NA	A0A1B0RXM1	Streptococcus_phage	33.5	5.6e-16
WP_003439097.1|495065_495563_+	effector binding domain-containing protein	NA	NA	NA	NA	NA
WP_003439098.1|496306_496669_+	response regulator	NA	A0A220YL79	Alteromonas_virus	29.2	3.5e-06
WP_032507908.1|496733_497351_+	chemotaxis protein CheC	NA	NA	NA	NA	NA
WP_003425085.1|497347_497833_+	chemotaxis protein CheD	NA	NA	NA	NA	NA
WP_003439100.1|497875_498394_+	purine-binding chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_009895564.1|498529_499489_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	39.5	1.4e-25
WP_003425090.1|499514_501218_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	40.6	1.5e-09
>prophage 38
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	506496	507486	4110080		Klosneuvirus(100.0%)	1	NA	NA
WP_003439110.1|506496_507486_+	ornithine cyclodeaminase family protein	NA	A0A1V0SL93	Klosneuvirus	30.4	5.5e-17
>prophage 39
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	514498	515770	4110080		Bacillus_phage(100.0%)	1	NA	NA
WP_003425119.1|514498_515770_-	spore cortex-lytic protein SleC	NA	A0A127AWA8	Bacillus_phage	42.0	6.2e-05
>prophage 40
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	524936	525773	4110080		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_003438990.1|524936_525773_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.5	2.1e-30
>prophage 41
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	529829	532067	4110080		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_003438993.1|529829_532067_+	ATP-binding protein	NA	A0A2H4UU76	Bodo_saltans_virus	32.7	9.9e-06
>prophage 42
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	541111	546896	4110080	transposase,tRNA	Tupanvirus(50.0%)	3	NA	NA
WP_009888359.1|541111_543031_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
WP_003439012.1|543798_544890_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_021365082.1|545555_546896_+	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	38.6	1.5e-78
>prophage 43
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	553163	558758	4110080		Hokovirus(50.0%)	4	NA	NA
WP_021368904.1|553163_555731_+	pyruvate phosphate dikinase PEP/pyruvate-binding domain protein	NA	A0A1V0SGR7	Hokovirus	39.2	1.2e-47
WP_003437601.1|555990_556140_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003437609.1|556348_557230_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_021368911.1|557579_558758_-	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	27.3	3.3e-08
>prophage 44
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	571687	578201	4110080		Streptococcus_phage(100.0%)	6	NA	NA
WP_003438920.1|571687_573787_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	29.5	2.2e-71
WP_003438917.1|573829_574225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438914.1|575165_575354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003438911.1|575538_575979_-	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_003438907.1|576333_577647_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	40.8	2.8e-93
WP_003429542.1|577664_578201_+	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	69.7	1.2e-63
>prophage 45
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	581357	581891	4110080		Streptococcus_phage(100.0%)	1	NA	NA
WP_003438885.1|581357_581891_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	50.0	9.2e-35
>prophage 46
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	590132	591470	4110080		Clostridium_phage(100.0%)	1	NA	NA
WP_100852700.1|590132_591470_-	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	23.7	1.1e-12
>prophage 47
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	595274	596027	4110080		Planktothrix_phage(100.0%)	1	NA	NA
WP_009895631.1|595274_596027_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.3	6.9e-28
>prophage 48
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	603704	607238	4110080		Clostridioides_phage(50.0%)	2	NA	NA
WP_021358903.1|603704_604943_+	conserved phage C-terminal domain-containing protein	NA	A0A1V0E018	Clostridioides_phage	34.0	3.9e-12
WP_003437698.1|605936_607238_+	AAA family ATPase	NA	A0A218KST2	Xenohaliotis_phage	29.3	1.1e-20
>prophage 49
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	624670	626587	4110080		Bacillus_phage(50.0%)	2	NA	NA
WP_003440155.1|624670_625588_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	28.6	4.6e-18
WP_021368923.1|625660_626587_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	45.4	3.9e-41
>prophage 50
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	641262	644356	4110080		Streptococcus_phage(50.0%)	3	NA	NA
WP_003434518.1|641262_642519_+	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	51.0	2.7e-93
WP_003434520.1|642581_643775_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003434522.1|643975_644356_+	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WHZ2	Clostridium_phage	63.4	3.5e-36
>prophage 51
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	653356	653857	4110080	holin	Clostridium_phage(100.0%)	1	NA	NA
WP_003434540.1|653356_653857_+|holin	holin-like glycosylating toxin export protein TcdE	holin	A0A090D848	Clostridium_phage	83.5	1.8e-56
>prophage 52
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	663051	663750	4110080		Lactobacillus_phage(100.0%)	1	NA	NA
WP_004454330.1|663051_663750_-	glycosylating toxin anti-sigma factor TcdC	NA	O64371	Lactobacillus_phage	54.2	8.4e-20
>prophage 53
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	667295	672585	4110080		Staphylococcus_phage(25.0%)	4	NA	NA
WP_021368927.1|667295_668210_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	44.2	7.8e-42
WP_009888460.1|668380_669088_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.4	4.2e-35
WP_021378163.1|669132_670539_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	24.2	2.5e-07
WP_003426867.1|672195_672585_+	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	47.2	2.1e-28
>prophage 54
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	688672	694890	4110080		Aeromonas_phage(33.33%)	4	NA	NA
WP_003439138.1|688672_690271_+	sodium/solute symporter	NA	A0A240F3J2	Aeromonas_phage	26.0	5.4e-22
WP_003429728.1|690305_691328_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003439135.1|691804_693208_-	AAA family ATPase	NA	H8ZJI5	Ostreococcus_tauri_virus	44.7	6.2e-99
WP_011860916.1|694380_694890_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	35.5	5.9e-15
>prophage 55
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	712511	713531	4110080	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_003436795.1|712511_713531_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	36.4	4.3e-33
>prophage 56
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	718194	733058	4110080	tRNA	Phage_TP(25.0%)	9	NA	NA
WP_003436877.1|718194_720795_+	U32 family peptidase	NA	Q6DW11	Phage_TP	30.2	2.2e-28
WP_003436878.1|720898_721477_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_003436879.1|721511_721988_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_003436880.1|722506_723328_+	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003436881.1|723550_726064_+	transporter substrate-binding domain-containing protein	NA	G3MA91	Bacillus_virus	30.8	6.9e-16
WP_003436882.1|726267_727719_-	aminoacyl-histidine dipeptidase	NA	NA	NA	NA	NA
WP_003436883.1|728037_730416_+	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	31.9	4.6e-09
WP_003436884.1|730481_730895_+	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_003436885.1|731357_733058_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	38.4	3.4e-99
>prophage 57
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	749333	750719	4110080		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_003436922.1|749333_750719_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.4	3.2e-47
>prophage 58
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	760343	761282	4110080		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_003436931.1|760343_761282_+	radical SAM protein	NA	A0A1B1IVD8	uncultured_Mediterranean_phage	27.3	1.1e-06
>prophage 59
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	776619	787005	4110080		Pseudomonas_phage(25.0%)	6	NA	NA
WP_009895801.1|776619_779649_+	EAL domain-containing protein	NA	A0A2K8I9Y5	Pseudomonas_phage	42.7	6.0e-06
WP_003436959.1|779725_781792_+	ATP-dependent helicase	NA	A0A068EQC7	Bacillus_phage	31.7	1.9e-83
WP_003432207.1|782904_783720_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_009888558.1|783747_784425_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003432205.1|784483_785206_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.2	3.9e-28
WP_003437437.1|785853_787005_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	30.2	3.2e-32
>prophage 60
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	793273	799457	4110080		Tetraselmis_virus(66.67%)	4	NA	NA
WP_003437451.1|793273_794008_-	pyruvate formate lyase-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	30.5	4.6e-29
WP_003437454.1|794167_796399_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	44.7	1.7e-183
WP_003437463.1|796691_797753_+	calcium/sodium antiporter	NA	NA	NA	NA	NA
WP_003437464.1|797843_799457_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	38.3	2.7e-69
>prophage 61
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	808553	809318	4110080		Bacillus_phage(100.0%)	1	NA	NA
WP_003418417.1|808553_809318_+	RNA polymerase sporulation sigma factor SigF	NA	A0A0A0RV91	Bacillus_phage	43.4	5.7e-46
>prophage 62
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	826036	827587	4110080		Klosneuvirus(100.0%)	1	NA	NA
WP_009902156.1|826036_827587_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	32.0	3.5e-58
>prophage 63
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	831683	837246	4110080		Streptococcus_phage(33.33%)	7	NA	NA
WP_009895825.1|831683_832328_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	40.8	8.8e-32
WP_003437529.1|832413_832791_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_003437532.1|832790_833177_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_003437535.1|833355_834111_+	NAD(+) synthase	NA	E3SLH5	Synechococcus_phage	34.5	1.8e-28
WP_003437537.1|834193_834913_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003437541.1|835079_836084_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_021366277.1|836349_837246_+	hydroxymethylglutaryl-CoA lyase	NA	A0A1V0SKU2	Klosneuvirus	33.8	3.8e-33
>prophage 64
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	859351	860470	4110080	transposase	Geobacillus_virus(100.0%)	1	NA	NA
WP_076629440.1|859351_860470_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.1	3.1e-109
>prophage 65
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	863967	866663	4110080		Bacillus_phage(33.33%)	3	NA	NA
WP_021368943.1|863967_864660_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.2	3.8e-33
WP_004454247.1|864656_865592_+	HAMP domain-containing histidine kinase	NA	A0A2K9L114	Tupanvirus	24.2	1.4e-09
WP_004454245.1|865739_866663_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	42.7	1.3e-41
>prophage 66
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	874808	875918	4110080		Chrysochromulina_ericina_virus(100.0%)	1	NA	NA
WP_021368938.1|874808_875918_-	DEAD/DEAH box helicase	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	37.6	5.5e-58
>prophage 67
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	881964	890293	4110080	protease	Clostridioides_phage(50.0%)	10	NA	NA
WP_009895862.1|881964_882486_+	nitroreductase	NA	A0A1V0E011	Clostridioides_phage	38.5	5.6e-21
WP_004453624.1|882674_882986_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_009895864.1|883013_883700_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_004454226.1|883931_884816_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_004453621.1|884914_886090_+	phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	S4VT61	Pandoravirus	24.4	7.2e-16
WP_004454225.1|886217_887072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004454224.1|887115_888351_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_004454223.1|888451_889393_+	cell wall-binding protein Cwp25	NA	A0A2R2ZGK6	Clostridioides_phage	41.8	7.7e-61
WP_074137266.1|889443_889803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004454221.1|889828_890293_-	helix-turn-helix transcriptional regulator	NA	S5MAC0	Brevibacillus_phage	38.6	7.8e-06
>prophage 68
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	901482	902508	4110080		Planktothrix_phage(100.0%)	1	NA	NA
WP_004454207.1|901482_902508_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	26.5	9.7e-17
>prophage 69
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	911216	912077	4110080		Tupanvirus(100.0%)	1	NA	NA
WP_004454200.1|911216_912077_+	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	35.9	8.7e-35
>prophage 70
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	919797	924140	4110080		Indivirus(100.0%)	4	NA	NA
WP_003437183.1|919797_920553_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	30.3	6.1e-16
WP_003439333.1|920539_921442_-	ABC transporter	NA	NA	NA	NA	NA
WP_003439336.1|922250_923288_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_009895911.1|923384_924140_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	28.8	1.7e-13
>prophage 71
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	928048	929092	4110080		Moumouvirus(100.0%)	1	NA	NA
WP_003437173.1|928048_929092_+	SPFH/Band 7/PHB domain protein	NA	A0A2P1EMF1	Moumouvirus	33.3	2.1e-19
>prophage 72
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	941027	943570	4110080		Cyanophage(33.33%)	4	NA	NA
WP_003418655.1|941027_941441_+	adenosylmethionine decarboxylase	NA	A0A1D7SEZ2	Cyanophage	45.7	1.1e-16
WP_003437154.1|941470_942322_+	polyamine aminopropyltransferase	NA	A0A1C9C533	Heterosigma_akashiwo_virus	28.3	3.9e-19
WP_003437151.1|942311_943190_+	agmatinase	NA	NA	NA	NA	NA
WP_003418660.1|943369_943570_-	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	66.7	3.8e-18
>prophage 73
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	952779	953916	4110080		Bacillus_virus(100.0%)	1	NA	NA
WP_003437132.1|952779_953916_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.5	8.0e-28
>prophage 74
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	965557	966004	4110080		Clostridioides_phage(100.0%)	1	NA	NA
WP_009892857.1|965557_966004_+	hypothetical protein	NA	A0A1V0E019	Clostridioides_phage	37.7	2.9e-10
>prophage 75
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	973647	984901	4110080		Bacillus_virus(50.0%)	7	NA	NA
WP_003437082.1|973647_974589_+	D-3-phosphoglycerate dehydrogenase	NA	M1I539	Acanthocystis_turfacea_Chlorella_virus	30.3	3.0e-28
WP_003437079.1|974620_975871_+	DUF1015 domain-containing protein	NA	NA	NA	NA	NA
WP_003437076.1|976690_980239_+	diguanylate cyclase	NA	G3MA91	Bacillus_virus	35.3	6.8e-17
WP_003437073.1|980423_982358_+	YgiQ family radical SAM protein	NA	M1QSD9	Pseudomonas_phage	41.3	6.3e-49
WP_009895950.1|982463_983459_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003437067.1|983486_984215_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003437066.1|984202_984901_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.8	3.6e-23
>prophage 76
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	995238	996726	4110080		Bacillus_phage(100.0%)	1	NA	NA
WP_003437034.1|995238_996726_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	29.4	1.3e-22
>prophage 77
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	999809	1003436	4110080		Bacillus_phage(100.0%)	2	NA	NA
WP_003437027.1|999809_1001537_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.1	4.6e-51
WP_003437025.1|1001573_1003436_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.9	2.4e-53
>prophage 78
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1009298	1010342	4110080		Mycoplasma_phage(100.0%)	1	NA	NA
WP_003437017.1|1009298_1010342_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	41.7	2.4e-39
>prophage 79
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1015791	1017048	4110080		Catovirus(100.0%)	1	NA	NA
WP_003437008.1|1015791_1017048_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	25.9	1.0e-07
>prophage 80
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1020327	1022504	4110080		Catovirus(50.0%)	2	NA	NA
WP_003437003.1|1020327_1021452_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	26.4	8.4e-22
WP_003437000.1|1021529_1022504_+	glucosaminidase domain-containing protein	NA	A0A0A7RUS8	Clostridium_phage	50.6	8.9e-36
>prophage 81
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1027952	1029971	4110080		Bacillus_phage(100.0%)	1	NA	NA
WP_021359059.1|1027952_1029971_+	N-acetylmuramoyl-L-alanine amidase	NA	J9PV86	Bacillus_phage	35.6	3.9e-17
>prophage 82
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1041250	1049849	4110080		Bacillus_phage(50.0%)	3	NA	NA
WP_003437946.1|1041250_1045078_+	helicase-exonuclease AddAB subunit AddA	NA	S5M596	Bacillus_phage	24.1	2.9e-13
WP_003437948.1|1045123_1046335_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_003437950.1|1046321_1049849_+	AAA family ATPase	NA	G3MAB6	Bacillus_virus	26.8	1.0e-09
>prophage 83
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1056893	1057754	4110080		Staphylococcus_phage(100.0%)	1	NA	NA
WP_009896018.1|1056893_1057754_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.8	3.0e-19
>prophage 84
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1067426	1068802	4110080		Clostridium_phage(50.0%)	2	NA	NA
WP_003437972.1|1067426_1068431_+	nucleoid-associated protein	NA	J9QE81	Clostridium_phage	79.6	2.3e-151
WP_003418905.1|1068574_1068802_-	acyl carrier protein	NA	A0A2C9CX86	Yersinia_phage	45.5	2.6e-07
>prophage 85
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1084732	1085638	4110080		Lactobacillus_phage(100.0%)	1	NA	NA
WP_003438004.1|1084732_1085638_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.0	6.4e-12
>prophage 86
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1089330	1091031	4110080		Bacillus_phage(100.0%)	1	NA	NA
WP_003438014.1|1089330_1091031_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	33.4	2.3e-63
>prophage 87
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1095662	1102189	4110080		Clostridioides_phage(25.0%)	5	NA	NA
WP_003438019.1|1095662_1096376_+	two-component system response regulator RgbR	NA	A0A2R2ZGH8	Clostridioides_phage	37.7	7.0e-30
WP_003438020.1|1096369_1097749_+	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	30.4	6.7e-37
WP_011861120.1|1097989_1098679_+	lipoprotein	NA	NA	NA	NA	NA
WP_003438022.1|1098899_1101272_+	formate C-acetyltransferase/glycerol dehydratase family glycyl radical enzyme	NA	A0A1S6UAD4	Serratia_phage	43.4	8.0e-06
WP_003438023.1|1101286_1102189_+	glycyl-radical enzyme activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	30.3	1.5e-13
>prophage 88
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1109390	1113197	4110080		Bacillus_phage(100.0%)	3	NA	NA
WP_003438039.1|1109390_1112039_+	DNA polymerase I	NA	A0A142F1Q9	Bacillus_phage	38.2	4.0e-54
WP_003438041.1|1112047_1112650_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003438043.1|1112642_1113197_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXN2	Bacillus_phage	36.2	3.1e-09
>prophage 89
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1116727	1118002	4110080		Clostridium_phage(100.0%)	1	NA	NA
WP_021368964.1|1116727_1118002_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	44.6	3.8e-26
>prophage 90
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1148497	1149064	4110080	integrase	Bacillus_phage(100.0%)	1	1146853:1146867	1150728:1150742
1146853:1146867	attL	TATACTATTAAACAT	NA	NA	NA	NA
WP_003438082.1|1148497_1149064_-|integrase	tyrosine-type recombinase/integrase	integrase	H0USV4	Bacillus_phage	35.2	3.4e-11
WP_003438082.1|1148497_1149064_-|integrase	tyrosine-type recombinase/integrase	integrase	H0USV4	Bacillus_phage	35.2	3.4e-11
1150728:1150742	attR	ATGTTTAATAGTATA	NA	NA	NA	NA
>prophage 91
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1154882	1156274	4110080		Tupanvirus(100.0%)	1	NA	NA
WP_003438093.1|1154882_1156274_+	FAD-binding oxidoreductase	NA	A0A2K9L3G7	Tupanvirus	28.1	1.2e-06
>prophage 92
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1165106	1169345	4110080		Trichoplusia_ni_ascovirus(33.33%)	4	NA	NA
WP_003428442.1|1165106_1165856_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.1	5.8e-19
WP_003419132.1|1165909_1166134_+	acyl carrier protein	NA	A0A2C9CY51	Yersinia_phage	44.4	1.6e-09
WP_003438103.1|1166162_1167401_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_021389714.1|1167626_1169345_+	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	31.2	3.6e-16
>prophage 93
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1184567	1186880	4110080		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_003438130.1|1184567_1185773_+	exodeoxyribonuclease VII large subunit	NA	A0A2H4UVM9	Bodo_saltans_virus	34.3	1.2e-50
WP_003428410.1|1185774_1185990_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_009888951.1|1185992_1186880_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	27.0	1.1e-05
>prophage 94
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1195415	1196240	4110080		Bacillus_phage(100.0%)	1	NA	NA
WP_003424711.1|1195415_1196240_+	sporulation transcription factor Spo0A	NA	W8CYM9	Bacillus_phage	31.7	3.9e-08
>prophage 95
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1202509	1216921	4110080	integrase	Escherichia_phage(14.29%)	13	1195177:1195194	1223819:1223836
1195177:1195194	attL	TACAAAATAATAAAATTA	NA	NA	NA	NA
WP_003428375.1|1202509_1203424_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2L1IV36	Escherichia_phage	27.4	8.1e-07
WP_003438158.1|1203465_1204638_+	phosphopentomutase	NA	NA	NA	NA	NA
WP_003438160.1|1204684_1205497_+	purine-nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	40.9	1.0e-61
WP_009896135.1|1205700_1207026_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	56.0	1.3e-130
WP_003438164.1|1207238_1208318_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003438166.1|1208489_1209164_+	O-methyltransferase	NA	NA	NA	NA	NA
WP_003438167.1|1209150_1210398_+	U32 family peptidase	NA	Q6DW11	Phage_TP	37.6	2.1e-58
WP_003438168.1|1210469_1212134_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_003419254.1|1212230_1212515_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003438169.1|1212537_1214055_-	recombinase family protein	NA	I3VYZ3	Thermoanaerobacterium_phage	49.5	2.6e-127
WP_003438170.1|1214179_1215001_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003438171.1|1215191_1216619_+	cell wall-binding protein Cwp26	NA	A0A2R2ZGK6	Clostridioides_phage	44.1	3.4e-76
WP_009896140.1|1216768_1216921_+	hypothetical protein	NA	J9QED5	Clostridium_phage	50.0	3.6e-05
1223819:1223836	attR	TACAAAATAATAAAATTA	NA	NA	NA	NA
>prophage 96
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1221016	1221400	4110080		Clostridioides_phage(100.0%)	1	NA	NA
WP_003433385.1|1221016_1221400_-	hypothetical protein	NA	A0A1V0E007	Clostridioides_phage	66.1	1.7e-38
>prophage 97
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1224629	1227052	4110080		Clostridium_phage(66.67%)	4	NA	NA
WP_003438185.1|1224629_1225019_+	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WJP7	Clostridium_phage	55.9	9.6e-34
WP_003438188.1|1225338_1225848_+	glycopeptide resistance protein VanZ1	NA	NA	NA	NA	NA
WP_003419284.1|1225949_1226144_-	hypothetical protein	NA	A0A0A8WI84	Clostridium_phage	39.6	4.7e-05
WP_003438191.1|1226659_1227052_-	sigma-70 family RNA polymerase sigma factor	NA	S6ANS0	Bacillus_phage	38.6	5.7e-10
>prophage 98
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1231221	1231932	4110080		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_003428341.1|1231221_1231932_+	ribonuclease III	NA	L7RCJ8	Acanthamoeba_polyphaga_moumouvirus	33.9	4.2e-27
>prophage 99
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1248111	1251136	4110080		Clostridioides_phage(50.0%)	2	NA	NA
WP_003438236.1|1248111_1250301_+	adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	NA	A0A2R2ZGN9	Clostridioides_phage	64.2	2.1e-210
WP_003438239.1|1250368_1251136_+	ribonuclease HII	NA	A0A0N9QYD4	Chrysochromulina_ericina_virus	38.6	1.5e-22
>prophage 100
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1255619	1256555	4110080		Staphylococcus_phage(100.0%)	1	NA	NA
WP_003438253.1|1255619_1256555_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.7	1.7e-23
>prophage 101
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1261798	1273725	4110080	tRNA	Catovirus(20.0%)	9	NA	NA
WP_003438266.1|1261798_1263886_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	36.2	4.3e-104
WP_003438268.1|1264050_1264836_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_009889058.1|1264942_1266208_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	43.4	8.7e-84
WP_003438272.1|1266238_1267009_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003419409.1|1267117_1267564_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_009905390.1|1267581_1268775_+	cysteine desulfurase NifS	NA	H7BUW1	unidentified_phage	40.2	5.6e-40
WP_003438275.1|1268828_1269269_+	Fe-S cluster assembly scaffold protein NifU	NA	A0A2H4N7M4	Lake_Baikal_phage	53.5	2.3e-31
WP_003438277.1|1269557_1270637_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003438278.1|1271085_1273725_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L3D8	Tupanvirus	33.8	2.2e-65
>prophage 102
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1281130	1282294	4110080		Stx2-converting_phage(100.0%)	1	NA	NA
WP_003428267.1|1281130_1282294_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	29.3	9.9e-34
>prophage 103
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1285428	1375114	4110080	tail,plate,tRNA,integrase,protease,portal	Clostridium_phage(37.14%)	85	1303719:1303737	1376591:1376609
WP_003428258.1|1285428_1285968_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	37.0	1.6e-18
WP_003438288.1|1286129_1286759_+	DUF2953 domain-containing protein	NA	NA	NA	NA	NA
WP_003419458.1|1286712_1287141_+	GerW family sporulation protein	NA	NA	NA	NA	NA
WP_003419459.1|1287388_1287829_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003438290.1|1287844_1289296_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	40.4	2.8e-54
WP_003438292.1|1289386_1290055_-	YwaF family protein	NA	NA	NA	NA	NA
WP_003419462.1|1290323_1290464_+	hypothetical protein	NA	B6SBZ7	Clostridium_virus	53.7	1.5e-05
WP_003428248.1|1290638_1290959_-	MazG-like family protein	NA	NA	NA	NA	NA
WP_003428245.1|1291078_1291816_-	NAD-dependent protein deacylase	NA	S5M4R0	Bacillus_phage	32.9	2.6e-27
WP_003438294.1|1292030_1293854_+	N-acetylglucosaminidase	NA	Q4ZE13	Staphylococcus_virus	33.8	1.0e-21
WP_003438301.1|1294068_1298367_+	PolC-type DNA polymerase III	NA	A0A0A7RWA3	Clostridium_phage	40.1	1.7e-25
WP_003438303.1|1298570_1299032_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_003428238.1|1299061_1300216_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_003419469.1|1300222_1300504_+	YlxR family protein	NA	NA	NA	NA	NA
WP_003419470.1|1300493_1300805_+	ribosomal L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA	NA
WP_003438306.1|1300826_1302767_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	26.6	3.7e-25
WP_003428234.1|1302809_1303190_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_003438308.1|1303170_1304154_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
1303719:1303737	attL	TGAAATGGCAAAAAATTTA	NA	NA	NA	NA
WP_003428232.1|1304166_1305072_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003438310.1|1305202_1306132_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_003419491.1|1306235_1306493_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_009889099.1|1306732_1307578_+	DegV family protein	NA	NA	NA	NA	NA
WP_003438316.1|1307702_1309814_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003438319.1|1310079_1310823_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_003438321.1|1310980_1312228_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	35.1	5.1e-52
WP_003419503.1|1312262_1312508_+	YlmC/YmxH family sporulation protein	NA	NA	NA	NA	NA
WP_003438324.1|1312517_1313741_+	aspartate kinase	NA	NA	NA	NA	NA
WP_003428224.1|1313853_1314588_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	NA	NA	NA	NA
WP_003438328.1|1314710_1317122_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
WP_003438330.1|1317124_1318183_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
WP_003438333.1|1318176_1319511_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_021370268.1|1319497_1320040_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003428218.1|1320327_1321374_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
WP_003428216.1|1321549_1323091_+	ribonuclease Y	NA	NA	NA	NA	NA
WP_003438341.1|1323404_1325741_+	diguanylate cyclase	NA	G3MA91	Bacillus_virus	30.6	2.0e-17
WP_003438344.1|1326122_1327904_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_009902411.1|1327985_1328516_-	signal peptidase I	NA	NA	NA	NA	NA
WP_003438350.1|1328555_1329380_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_009889110.1|1329636_1330545_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_003438353.1|1330688_1332134_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
WP_003419561.1|1332444_1332897_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003438357.1|1333231_1334428_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_003438360.1|1334812_1335763_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_003438367.1|1335923_1336676_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
WP_003438370.1|1336767_1337544_-	exonuclease domain-containing protein	NA	NA	NA	NA	NA
WP_003428202.1|1337858_1339757_+	glutamine synthetase	NA	NA	NA	NA	NA
WP_003438374.1|1339884_1341006_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
WP_009889116.1|1341204_1341537_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003438377.1|1341523_1342582_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_003438380.1|1342574_1343645_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_003428196.1|1343746_1344283_+	lipoprotein	NA	NA	NA	NA	NA
WP_016729592.1|1344398_1345106_+	lantibiotic protection ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.9	4.3e-56
WP_003438387.1|1345107_1345824_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
WP_021363441.1|1345825_1346584_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
WP_021368953.1|1346718_1348107_+	two-component system sensor histidine kinase	NA	NA	NA	NA	NA
WP_003438396.1|1348182_1349004_-	pyridoxamine kinase	NA	NA	NA	NA	NA
WP_003438399.1|1349239_1350409_+	amidase domain-containing protein	NA	NA	NA	NA	NA
WP_003419624.1|1350591_1350792_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
WP_009889129.1|1351212_1351641_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_009889131.1|1351783_1352539_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_003428186.1|1353239_1353746_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
WP_003428185.1|1353827_1354148_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
WP_003419641.1|1354316_1354514_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003428183.1|1354618_1355059_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	6.0e-32
WP_003438413.1|1355307_1355751_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	35.4	3.8e-18
WP_003438414.1|1355755_1356820_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A1V0DZX4	Clostridioides_phage	52.8	7.6e-97
WP_003419646.1|1356833_1357262_+|tail	phage tail tube protein	tail	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
WP_003419647.1|1357375_1357822_+|portal	phage portal protein	portal	A0A090EUD0	Clostridium_phage	36.0	8.2e-13
WP_003419648.1|1357848_1358016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003438437.1|1358015_1360469_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	55.7	6.1e-17
WP_003428168.1|1360468_1360891_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	71.1	1.7e-52
WP_003438440.1|1361172_1362702_+	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	2.2e-243
WP_003438447.1|1362717_1363044_+	DUF2577 family protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
WP_003438449.1|1363043_1363472_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	4.4e-64
WP_003438450.1|1363464_1364517_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFP3	Clostridium_phage	71.0	2.7e-139
WP_003438451.1|1364513_1365212_+	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	56.9	5.5e-48
WP_003438452.1|1365212_1366196_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	47.8	6.4e-58
WP_003438453.1|1366212_1371534_+	hypothetical protein	NA	A0A0A8WEY5	Clostridium_phage	37.4	7.8e-118
WP_003438464.1|1371550_1371904_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	1.6e-11
WP_003438465.1|1372166_1372427_+	hypothetical protein	NA	A0A0A8WE78	Clostridium_phage	91.6	6.4e-34
WP_003419674.1|1372647_1373103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438466.1|1373330_1373750_-	helix-turn-helix transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
WP_003428146.1|1374048_1374258_+	helix-turn-helix transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
WP_009889160.1|1374289_1374499_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003428144.1|1374715_1375114_-	helix-turn-helix domain-containing protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
1376591:1376609	attR	TAAATTTTTTGCCATTTCA	NA	NA	NA	NA
>prophage 104
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1386555	1387623	4110080		Oenococcus_phage(100.0%)	1	NA	NA
WP_003438474.1|1386555_1387623_+	dipeptide epimerase	NA	Q6A202	Oenococcus_phage	27.0	1.7e-16
>prophage 105
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1400417	1408504	4110080		Tupanvirus(66.67%)	5	NA	NA
WP_003438500.1|1400417_1401149_-	glycerophosphodiester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	34.2	2.0e-24
WP_003438504.1|1401479_1403669_+	amino acid adenylation domain-containing protein	NA	A0A2K9L3I8	Tupanvirus	25.8	2.1e-56
WP_009896311.1|1404080_1406009_+	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
WP_003438510.1|1405995_1406343_+	PqqD family protein	NA	NA	NA	NA	NA
WP_021361424.1|1406584_1408504_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.9	3.6e-57
>prophage 106
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1412023	1413280	4110080		Pseudomonas_phage(100.0%)	1	NA	NA
WP_003438532.1|1412023_1413280_+	competence/damage-inducible protein A	NA	B5TK85	Pseudomonas_phage	34.7	1.1e-14
>prophage 107
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1417968	1418904	4110080		Staphylococcus_phage(100.0%)	1	NA	NA
WP_009902494.1|1417968_1418904_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	61.6	3.5e-45
>prophage 108
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1426733	1429540	4110080		Bacillus_phage(100.0%)	2	NA	NA
WP_003438571.1|1426733_1428467_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	33.9	3.2e-12
WP_003438573.1|1428706_1429540_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	29.7	1.4e-10
>prophage 109
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1434639	1435314	4110080		Bacillus_virus(100.0%)	1	NA	NA
WP_003429376.1|1434639_1435314_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	46.7	1.7e-17
>prophage 110
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1438922	1445045	4110080		Bacillus_phage(33.33%)	3	NA	NA
WP_003438599.1|1438922_1442042_+	DEAD/DEAH box helicase family protein	NA	A0A127AW80	Bacillus_phage	24.1	9.5e-31
WP_009889235.1|1442059_1442659_+	viroplasmin family protein	NA	A0A2H4JH24	uncultured_Caudovirales_phage	39.9	8.7e-34
WP_003438605.1|1442915_1445045_-	peroxiredoxin	NA	A0A2K9KZQ8	Tupanvirus	25.4	1.3e-18
>prophage 111
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1452640	1466263	4110080		Pandoravirus(30.0%)	15	NA	NA
WP_003429405.1|1452640_1453507_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	33.3	1.9e-29
WP_003438621.1|1453748_1454558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016728685.1|1454701_1455766_+	peptidase	NA	U5Q1E2	Bacillus_phage	50.8	4.2e-23
WP_003438625.1|1455793_1456513_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_003438628.1|1456536_1457121_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	1.1e-57
WP_003438631.1|1457122_1458472_+	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	41.2	2.2e-37
WP_003438634.1|1458461_1459205_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_003438637.1|1459238_1459940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429416.1|1459965_1460538_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
WP_003438639.1|1460601_1461393_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	28.8	1.1e-23
WP_009889257.1|1461403_1461769_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_003438641.1|1461761_1462268_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	S4VNV0	Pandoravirus	35.2	1.2e-12
WP_003419887.1|1462248_1463034_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.7e-13
WP_009896376.1|1463288_1465079_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
WP_003429425.1|1465096_1466263_+	RNA polymerase sigma factor RpoD	NA	M4SMP8	Cyanophage	36.8	9.6e-37
>prophage 112
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1474782	1475460	4110080		Planktothrix_phage(100.0%)	1	NA	NA
WP_003438655.1|1474782_1475460_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.7	1.2e-31
>prophage 113
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1479677	1482719	4110080		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_021390423.1|1479677_1482719_-	cell wall-binding protein Cwp20	NA	A0A2H4JAN9	uncultured_Caudovirales_phage	25.3	1.1e-10
>prophage 114
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1485983	1489595	4110080		Bacillus_phage(100.0%)	2	NA	NA
WP_003438673.1|1485983_1487759_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.9	4.0e-42
WP_003438676.1|1487771_1489595_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	1.7e-40
>prophage 115
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1499288	1500020	4110080		Bacillus_virus(100.0%)	1	NA	NA
WP_003434123.1|1499288_1500020_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.9	3.1e-25
>prophage 116
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1504745	1510073	4110080		Planktothrix_phage(50.0%)	4	NA	NA
WP_009896423.1|1504745_1505711_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	1.1e-33
WP_003434110.1|1505703_1506360_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003434107.1|1506395_1507187_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003434104.1|1507334_1510073_+	PAS domain-containing sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	24.8	9.2e-22
>prophage 117
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1515390	1522312	4110080	transposase	Synechococcus_phage(33.33%)	7	NA	NA
WP_009889336.1|1515390_1516275_+	RNA polymerase sigma factor RpoD/SigA	NA	F4YCU2	Synechococcus_phage	35.0	5.8e-34
WP_003434095.1|1516748_1517156_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076629448.1|1517804_1518923_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	6.3e-110
WP_021389725.1|1518999_1520187_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_003439345.1|1520222_1520882_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_003427427.1|1521064_1521433_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003439347.1|1521436_1522312_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.4	3.2e-16
>prophage 118
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1531535	1532363	4110080		Ostreococcus_tauri_virus(100.0%)	1	NA	NA
WP_003439367.1|1531535_1532363_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	E4WLQ5	Ostreococcus_tauri_virus	40.1	1.0e-53
>prophage 119
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1551928	1552603	4110080		Planktothrix_phage(100.0%)	1	NA	NA
WP_003436744.1|1551928_1552603_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.5	3.7e-33
>prophage 120
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1555941	1556709	4110080		Planktothrix_phage(100.0%)	1	NA	NA
WP_003436725.1|1555941_1556709_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	3.4e-30
>prophage 121
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1567099	1567846	4110080		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_021364459.1|1567099_1567846_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	33.6	3.9e-15
>prophage 122
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1575487	1575664	4110080		Clostridium_phage(100.0%)	1	NA	NA
WP_003420092.1|1575487_1575664_-	hypothetical protein	NA	A0A0A8WHZ4	Clostridium_phage	73.2	8.2e-17
>prophage 123
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1581541	1582210	4110080		Klosneuvirus(100.0%)	1	NA	NA
WP_003436669.1|1581541_1582210_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA	A0A1V0SIZ6	Klosneuvirus	31.2	1.2e-18
>prophage 124
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1592914	1594603	4110080		Yellowstone_lake_phycodnavirus(100.0%)	1	NA	NA
WP_003436643.1|1592914_1594603_+	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.5	4.2e-49
>prophage 125
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1600151	1609349	4110080		Bacillus_phage(50.0%)	7	NA	NA
WP_003436565.1|1600151_1601366_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	29.7	4.5e-05
WP_003436561.1|1601785_1602307_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003436560.1|1602662_1603460_+	G5 domain-containing protein	NA	S6BUU4	Bacillus_phage	49.5	6.6e-13
WP_003436558.1|1603569_1604160_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_009896733.1|1604225_1605923_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	47.6	2.5e-142
WP_003436555.1|1606136_1606976_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_003436553.1|1607492_1609349_+	PAS domain-containing protein	NA	W8CYF6	Bacillus_phage	29.7	9.3e-26
>prophage 126
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1618456	1619953	4110080		Staphylococcus_phage(100.0%)	1	NA	NA
WP_003436535.1|1618456_1619953_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.5	7.8e-15
>prophage 127
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1625163	1629011	4110080		Streptococcus_phage(100.0%)	3	NA	NA
WP_003430007.1|1625163_1627221_+	potassium-transporting ATPase subunit KdpB	NA	E4ZFI9	Streptococcus_phage	26.1	5.5e-35
WP_021368996.1|1627239_1627866_+	K(+)-transporting ATPase subunit C	NA	NA	NA	NA	NA
WP_003436514.1|1628102_1629011_+	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	48.4	3.4e-74
>prophage 128
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1636737	1639661	4110080		Brazilian_cedratvirus(50.0%)	4	NA	NA
WP_003436482.1|1636737_1637700_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	31.2	5.2e-20
WP_003436480.1|1637703_1638162_-	GyrI-like domain-containing protein	NA	NA	NA	NA	NA
WP_003436478.1|1638516_1638873_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009893181.1|1638944_1639661_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.7	1.4e-17
>prophage 129
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1646647	1647442	4110080		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_003436445.1|1646647_1647442_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	31.2	5.6e-20
>prophage 130
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1652274	1653000	4110080		Staphylococcus_phage(100.0%)	1	NA	NA
WP_003436372.1|1652274_1653000_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.0	8.7e-20
>prophage 131
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1660355	1679370	4110080	transposase	Bacillus_phage(20.0%)	16	NA	NA
WP_003436401.1|1660355_1661057_+	VanG-Cd-type vancomycin resistance DNA-binding response regulator VanR	NA	W8CYM9	Bacillus_phage	39.3	1.6e-42
WP_021378212.1|1661106_1662189_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	31.0	4.3e-23
WP_003436404.1|1662449_1663550_+	D-alanine--D-serine ligase VanG	NA	NA	NA	NA	NA
WP_003436406.1|1663546_1664353_+	M15 family metallopeptidase	NA	NA	NA	NA	NA
WP_003436408.1|1664370_1666509_+	serine racemase VanT catalytic subunit	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	31.6	1.0e-31
WP_003436409.1|1666822_1667443_+	TVP38/TMEM64 family protein	NA	NA	NA	NA	NA
WP_009889535.1|1667608_1668145_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_164662477.1|1668257_1668932_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	49.7	5.7e-50
WP_003436426.1|1669134_1671009_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2P1ELF7	Moumouvirus	30.1	4.7e-25
WP_003436430.1|1671100_1672537_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA	NA
WP_003435056.1|1672792_1673191_+|transposase	IS200/IS605 family transposase	transposase	A0A0A8WIU6	Clostridium_phage	96.2	2.5e-69
WP_016729235.1|1673187_1674351_+|transposase	transposase	transposase	A0A0A8WI33	Clostridium_phage	98.7	5.0e-219
WP_003420269.1|1674710_1675289_+	TerD family protein	NA	A0A0S4KZ16	Pseudomonas_phage	36.9	2.1e-16
WP_004454531.1|1675327_1675906_+	TerD family protein	NA	NA	NA	NA	NA
WP_003430074.1|1675991_1676621_+	TerD family protein	NA	K4JRX3	Caulobacter_phage	33.8	1.1e-26
WP_004454529.1|1676610_1679370_+	calcium-translocating P-type ATPase, PMCA-type	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	29.6	1.1e-91
>prophage 132
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1689819	1692471	4110080		uncultured_Caudovirales_phage(50.0%)	3	NA	NA
WP_004454520.1|1689819_1690773_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	49.4	1.5e-80
WP_004454519.1|1690762_1691719_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_004454517.1|1691715_1692471_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.1	1.9e-17
>prophage 133
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1703015	1709727	4110080		Prochlorococcus_phage(66.67%)	3	NA	NA
WP_004454507.1|1703015_1705490_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	36.5	9.1e-61
WP_004454506.1|1705489_1706947_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA	E3ST28	Prochlorococcus_phage	42.2	8.8e-88
WP_004454505.1|1707369_1709727_+	HAD-IC family P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	29.5	1.2e-38
>prophage 134
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1715015	1715567	4110080		Thermoanaerobacterium_phage(100.0%)	1	NA	NA
WP_004454500.1|1715015_1715567_-	helix-turn-helix transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	50.9	7.1e-06
>prophage 135
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1722653	1726564	4110080		Anomala_cuprea_entomopoxvirus(33.33%)	4	NA	NA
WP_004454493.1|1722653_1723541_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	35.5	1.5e-26
WP_004454492.1|1723546_1724320_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004454491.1|1724431_1725157_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.8	9.5e-35
WP_004454490.1|1725160_1726564_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	24.4	9.5e-15
>prophage 136
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1738562	1741818	4110080		Bacillus_phage(33.33%)	4	NA	NA
WP_004454472.1|1738562_1739234_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.9	3.5e-23
WP_004454470.1|1739223_1740456_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_003420374.1|1740605_1740923_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	41.4	3.3e-16
WP_003430157.1|1740939_1741818_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A249XZT7	Enterococcus_phage	27.8	1.2e-18
>prophage 137
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1746873	1753392	4110080		Staphylococcus_phage(60.0%)	5	NA	NA
WP_004454467.1|1746873_1747335_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	61.8	4.3e-49
WP_009889591.1|1747439_1748633_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	57.0	2.1e-119
WP_004454463.1|1748655_1749321_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	40.3	2.1e-36
WP_004454461.1|1749354_1750467_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	39.7	3.1e-53
WP_004454459.1|1750908_1753392_+	DNA helicase RecQ	NA	A0A167RIL2	Powai_lake_megavirus	41.4	1.8e-88
>prophage 138
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1794409	1795141	4110080		Clostridioides_phage(100.0%)	1	NA	NA
WP_004454401.1|1794409_1795141_+	response regulator transcription factor	NA	A0A2R2ZGH8	Clostridioides_phage	26.7	2.9e-15
>prophage 139
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1803652	1810522	4110080	protease	Clostridium_phage(25.0%)	8	NA	NA
WP_004454387.1|1803652_1806040_+|protease	cell wall-binding cysteine protease Cwp13	protease	A0A0A8WJG0	Clostridium_phage	35.5	2.2e-27
WP_003430242.1|1806270_1806504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004454386.1|1806792_1807383_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004454385.1|1807496_1808342_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.2	1.5e-23
WP_004454384.1|1808338_1809022_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004454383.1|1809018_1809735_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003423694.1|1809831_1810095_+	helix-turn-helix transcriptional regulator	NA	B3RH39	Bacillus_virus	41.9	3.7e-05
WP_004454382.1|1810066_1810522_+	peptide deformylase	NA	A0A142EZU8	Stenotrophomonas_phage	35.3	3.9e-10
>prophage 140
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1827284	1834173	4110080		Tupanvirus(25.0%)	8	NA	NA
WP_003439552.1|1827284_1827779_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A2K9L300	Tupanvirus	38.4	2.6e-23
WP_003430265.1|1827894_1828272_+	monooxygenase	NA	NA	NA	NA	NA
WP_009893285.1|1828477_1828918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021364510.1|1829576_1830884_+	hypothetical protein	NA	O64084	Bacillus_phage	29.2	9.1e-44
WP_003439548.1|1831357_1832161_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003430270.1|1832198_1832810_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003423753.1|1832841_1833513_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.4	1.0e-30
WP_003433620.1|1833810_1834173_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	53.2	3.5e-22
>prophage 141
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1839854	1841288	4110080		Bacillus_phage(100.0%)	1	NA	NA
WP_003430278.1|1839854_1841288_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	32.1	1.1e-34
>prophage 142
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1847617	1848592	4110080		Bacillus_virus(100.0%)	1	NA	NA
WP_003439509.1|1847617_1848592_-	exonuclease domain-containing protein	NA	G3MBN3	Bacillus_virus	31.4	2.6e-11
>prophage 143
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1855965	1861480	4110080		Pseudomonas_phage(25.0%)	5	NA	NA
WP_003430302.1|1855965_1856547_-	TerD family protein	NA	W8EDB4	Pseudomonas_phage	33.3	5.2e-15
WP_003439494.1|1856586_1857153_-	TerD family protein	NA	K4JRX3	Caulobacter_phage	30.9	5.5e-22
WP_003430304.1|1857608_1858469_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	36.2	1.6e-41
WP_003439490.1|1858617_1859508_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_022620479.1|1859725_1861480_+	cell wall-binding protein Cwp23	NA	A0A2R2ZGK6	Clostridioides_phage	41.8	8.7e-66
>prophage 144
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1869470	1871038	4110080		Clostridium_virus(50.0%)	2	NA	NA
WP_003430316.1|1869470_1869848_+	BlaI/MecI/CopY family transcriptional regulator	NA	A3QSD4	Clostridium_virus	58.7	1.2e-33
WP_003439467.1|1870378_1871038_+	hypothetical protein	NA	X5JAC0	Clostridium_phage	50.5	8.9e-48
>prophage 145
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1881650	1884308	4110080		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_003439440.1|1881650_1884308_+	cation-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	31.8	1.1e-91
>prophage 146
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1887723	1899397	4110080	protease	Micromonas_pusilla_virus(25.0%)	9	NA	NA
WP_003439434.1|1887723_1889541_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	48.0	1.2e-102
WP_003439432.1|1889718_1892421_+	sensor histidine kinase KdpD	NA	A0A1V0SGX0	Hokovirus	29.6	2.6e-16
WP_003439430.1|1892454_1893153_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003428624.1|1893509_1894466_+	CorA family divalent cation transporter	NA	NA	NA	NA	NA
WP_003428626.1|1894642_1894798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003439427.1|1894927_1895941_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	29.4	7.9e-19
WP_003439425.1|1895962_1897027_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_003439423.1|1897026_1898340_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_003439421.1|1898317_1899397_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	38.0	1.0e-56
>prophage 147
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1904638	1908076	4110080		Bacillus_virus(100.0%)	1	NA	NA
WP_003439408.1|1904638_1908076_+	PAS domain-containing protein	NA	G3MA91	Bacillus_virus	34.6	1.6e-18
>prophage 148
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1915521	1918080	4110080		Clostridium_phage(50.0%)	2	NA	NA
WP_021369087.1|1915521_1917027_-	recombinase family protein	NA	A0A0A7S054	Clostridium_phage	47.0	2.1e-113
WP_003435517.1|1917225_1918080_-	AraC family transcriptional regulator	NA	D0R0F8	Streptococcus_phage	27.5	4.0e-24
>prophage 149
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1921996	1926041	4110080		Staphylococcus_phage(50.0%)	4	NA	NA
WP_003435491.1|1921996_1922863_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.0	4.6e-28
WP_021369074.1|1922883_1924125_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003435479.1|1924348_1924921_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003435476.1|1925306_1926041_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	62.7	4.4e-88
>prophage 150
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1929251	1935915	4110080		Clostridium_phage(50.0%)	6	NA	NA
WP_003435466.1|1929251_1930040_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WE15	Clostridium_phage	62.3	1.9e-89
WP_009897045.1|1930178_1930616_-	cytidine/deoxycytidylate deaminase family protein	NA	A7KUY9	Bacillus_phage	54.3	5.9e-32
WP_003435458.1|1931437_1931947_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	43.8	1.0e-06
WP_003435450.1|1932351_1932888_+	signal peptidase II	NA	NA	NA	NA	NA
WP_003435446.1|1933321_1934122_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003435445.1|1934316_1935915_-	recombinase family protein	NA	A0A1L2BY67	Clostridium_phage	44.4	3.9e-113
>prophage 151
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1958251	1966446	4110080	integrase	Bacillus_virus(25.0%)	9	NA	NA
WP_003435382.1|1958251_1958851_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	36.2	4.2e-28
WP_011861393.1|1959020_1960379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003435381.1|1960371_1961004_+	OmpA family protein	NA	NA	NA	NA	NA
WP_003435380.1|1961332_1962490_+	MBL fold metallo-hydrolase	NA	Q332C0	Clostridium_botulinum_C_phage	42.2	1.7e-54
WP_009897067.1|1962636_1963272_-	transcriptional repressor LexA	NA	A0A0N9RTK0	Paenibacillus_phage	43.3	2.8e-14
WP_003435347.1|1963375_1964503_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_003435340.1|1964786_1965632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003435338.1|1965661_1966033_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_003428736.1|1966185_1966446_-	stage V sporulation protein S	NA	J9PTX7	Bacillus_phage	43.4	2.9e-10
>prophage 152
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1976010	1982169	4110080		Planktothrix_phage(33.33%)	4	NA	NA
WP_021369075.1|1976010_1976697_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.8	2.5e-32
WP_003435324.1|1976711_1979189_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_003435322.1|1979407_1980811_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	26.5	4.0e-21
WP_003435320.1|1981308_1982169_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	32.5	3.0e-35
>prophage 153
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1988105	1988792	4110080		Planktothrix_phage(100.0%)	1	NA	NA
WP_003435313.1|1988105_1988792_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.5	2.3e-30
>prophage 154
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	1992609	1994388	4110080		Bacillus_phage(50.0%)	2	NA	NA
WP_021369088.1|1992609_1993641_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	24.5	4.4e-17
WP_003435295.1|1993722_1994388_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.0	1.1e-34
>prophage 155
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2010306	2016023	4110080		Wolbachia_phage(33.33%)	3	NA	NA
WP_003435267.1|2010306_2012274_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	31.1	2.8e-73
WP_003435264.1|2012284_2015128_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	27.5	4.5e-64
WP_003435263.1|2015288_2016023_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.9	3.3e-11
>prophage 156
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2024438	2025911	4110080		Clostridioides_phage(100.0%)	1	NA	NA
WP_021369084.1|2024438_2025911_-	cell wall-binding protein Cwp28	NA	A0A2R2ZGK6	Clostridioides_phage	45.0	1.1e-66
>prophage 157
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2031086	2032219	4110080	integrase	Lactococcus_phage(50.0%)	2	2023786:2023802	2032553:2032569
2023786:2023802	attL	CATGTTTATATTTTTTT	NA	NA	NA	NA
WP_003431034.1|2031086_2031287_+	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	68.3	5.0e-18
WP_003435232.1|2032036_2032219_+|integrase	integrase	integrase	A0A090EUH1	Clostridium_phage	83.0	2.5e-16
2032553:2032569	attR	AAAAAAATATAAACATG	NA	NA	NA	NA
>prophage 158
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2043667	2044606	4110080		Bacillus_phage(100.0%)	1	NA	NA
WP_022582634.1|2043667_2044606_-	S8 family peptidase	NA	A0A127AWU5	Bacillus_phage	45.3	2.2e-60
>prophage 159
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2050258	2051436	4110080		Clostridium_phage(100.0%)	2	NA	NA
WP_003435199.1|2050258_2050516_-	hypothetical protein	NA	J9QD22	Clostridium_phage	56.6	2.2e-18
WP_003428913.1|2051064_2051436_+	helix-turn-helix transcriptional regulator	NA	A0A090D830	Clostridium_phage	39.1	4.3e-15
>prophage 160
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2054897	2060147	4110080		Cronobacter_phage(50.0%)	5	NA	NA
WP_003435194.1|2054897_2057492_-	ATP-dependent chaperone ClpB	NA	K4FB40	Cronobacter_phage	36.4	9.1e-128
WP_003435191.1|2057528_2058125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003424231.1|2058141_2058546_-	replication/maintenance protein RepL	NA	NA	NA	NA	NA
WP_003424232.1|2058912_2059287_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009897173.1|2059292_2060147_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.3	1.7e-22
>prophage 161
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2066047	2067235	4110080		Klosneuvirus(100.0%)	1	NA	NA
WP_003435173.1|2066047_2067235_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	28.5	4.3e-32
>prophage 162
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2082269	2082554	4110080		Clostridium_phage(100.0%)	1	NA	NA
WP_009897202.1|2082269_2082554_-	hypothetical protein	NA	Q24LG2	Clostridium_phage	60.2	2.8e-22
>prophage 163
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2096900	2098565	4110080	tRNA	Escherichia_phage(100.0%)	1	NA	NA
WP_003428989.1|2096900_2098565_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	54.4	1.5e-171
>prophage 164
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2101672	2111814	4110080	transposase,integrase	Clostridioides_phage(60.0%)	10	2098649:2098665	2120687:2120703
2098649:2098665	attL	TCTTCATCATTTACTTT	NA	NA	NA	NA
WP_003424324.1|2101672_2102248_-	hypothetical protein	NA	A0A2R2ZGQ3	Clostridioides_phage	57.5	5.4e-49
WP_009897212.1|2102563_2102827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003428999.1|2103263_2103641_-	BlaI/MecI/CopY family transcriptional regulator	NA	A0A2R2ZGM0	Clostridioides_phage	63.9	4.2e-26
WP_009893419.1|2103981_2105094_+|integrase	site-specific integrase	integrase	A0A2R2ZGM9	Clostridioides_phage	77.0	2.7e-161
WP_003435120.1|2105301_2105778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003429004.1|2105976_2107602_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	25.0	9.3e-46
WP_003435117.1|2107939_2108959_-	molybdopterin-binding protein	NA	NA	NA	NA	NA
WP_009890188.1|2108955_2109525_-	molybdenum cofactor cytidylyltransferase	NA	NA	NA	NA	NA
WP_003435113.1|2109631_2110354_-	putative selenium-dependent hydroxylase accessory protein YqeC	NA	NA	NA	NA	NA
WP_009897221.1|2110536_2111814_-|transposase	transposase	transposase	G3MB42	Bacillus_virus	35.0	2.8e-53
2120687:2120703	attR	TCTTCATCATTTACTTT	NA	NA	NA	NA
>prophage 165
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2133909	2134380	4110080		Acinetobacter_phage(100.0%)	1	NA	NA
WP_003434079.1|2133909_2134380_-	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	35.9	4.8e-19
>prophage 166
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2141868	2146147	4110080		Acidithiobacillus_phage(50.0%)	4	NA	NA
WP_003434070.1|2141868_2143803_-	AAA family ATPase	NA	K4I1H4	Acidithiobacillus_phage	33.0	1.4e-32
WP_003434069.1|2143831_2144554_-	cell division protein	NA	NA	NA	NA	NA
WP_009893441.1|2144603_2145590_-	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_003434065.1|2145646_2146147_-	QueT transporter family protein	NA	E7DN70	Pneumococcus_phage	35.6	1.1e-13
>prophage 167
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2149151	2149601	4110080		Acinetobacter_phage(100.0%)	1	NA	NA
WP_003434060.1|2149151_2149601_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	30.9	4.1e-12
>prophage 168
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2155329	2158925	4110080		Staphylococcus_phage(33.33%)	3	NA	NA
WP_003434049.1|2155329_2156037_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.1	1.8e-22
WP_003434048.1|2156289_2157435_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.4	9.8e-42
WP_009897252.1|2157548_2158925_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	34.6	8.7e-53
>prophage 169
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2162310	2162985	4110080		Synechococcus_phage(100.0%)	1	NA	NA
WP_003434040.1|2162310_2162985_-	fructose-6-phosphate aldolase	NA	E3SKN5	Synechococcus_phage	36.8	7.5e-34
>prophage 170
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2166194	2173422	4110080		Bacillus_phage(25.0%)	6	NA	NA
WP_003424455.1|2166194_2166863_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	41.1	1.7e-41
WP_003434034.1|2167022_2169524_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	35.4	5.2e-104
WP_003424459.1|2169807_2169999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003424461.1|2170146_2170389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003430621.1|2170600_2172424_+	translational GTPase TypA	NA	A0A1S5SF82	Streptococcus_phage	28.5	2.3e-24
WP_003434033.1|2172513_2173422_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	38.2	4.1e-59
>prophage 171
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2191062	2191266	4110080		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_021364587.1|2191062_2191266_-	helix-turn-helix domain-containing protein	NA	A0A2K5B261	Erysipelothrix_phage	43.5	9.5e-09
>prophage 172
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2195698	2196433	4110080		Flavobacterium_phage(100.0%)	1	NA	NA
WP_003424529.1|2195698_2196433_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	48.5	3.0e-28
>prophage 173
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2199949	2211166	4110080		Erythrobacter_phage(20.0%)	9	NA	NA
WP_021364589.1|2199949_2201134_-	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	30.2	2.8e-07
WP_003433992.1|2201237_2202296_-	potassium channel family protein	NA	NA	NA	NA	NA
WP_003433990.1|2202509_2203154_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003433989.1|2203341_2203965_+	sporulation membrane protein YtaF	NA	NA	NA	NA	NA
WP_003433987.1|2204027_2205938_-	mannonate oxidoreductase	NA	F2Y0V3	Organic_Lake_phycodnavirus	28.1	8.7e-19
WP_003433986.1|2206471_2207539_-	RNA ligase RtcB family protein	NA	A0A0K2CNT0	Brevibacillus_phage	25.8	9.1e-26
WP_003433984.1|2207784_2208780_-	protein kinase	NA	A0A285PXS3	Cedratvirus	21.8	6.8e-07
WP_003433982.1|2209038_2210298_-	VanW family protein	NA	NA	NA	NA	NA
WP_003433980.1|2210536_2211166_-	endonuclease/exonuclease/phosphatase family protein	NA	A0A1V0SL41	Klosneuvirus	29.2	7.1e-10
>prophage 174
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2219478	2220798	4110080		Klosneuvirus(100.0%)	1	NA	NA
WP_003430579.1|2219478_2220798_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	A0A1V0SKB7	Klosneuvirus	24.4	5.2e-23
>prophage 175
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2227151	2230417	4110080		Clostridium_phage(50.0%)	3	NA	NA
WP_016729111.1|2227151_2228282_-	helix-turn-helix domain-containing protein	NA	A0A0A7RTT7	Clostridium_phage	40.7	2.4e-72
WP_009897314.1|2228434_2229388_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_009903063.1|2229511_2230417_-	patatin-like phospholipase family protein	NA	J2YBI2	Acanthamoeba_polyphaga_lentillevirus	34.6	4.4e-05
>prophage 176
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2236059	2236809	4110080		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_003433939.1|2236059_2236809_-	amino acid ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.3	9.6e-14
>prophage 177
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2242288	2254887	4110080		Clostridium_phage(40.0%)	9	NA	NA
WP_003433925.1|2242288_2244466_-	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	26.8	2.0e-35
WP_003433922.1|2244746_2247926_+	DEAD/DEAH box helicase	NA	E5EQH3	Micromonas_sp._RCC1109_virus	29.7	1.2e-41
WP_009890358.1|2248210_2248975_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_009903070.1|2249130_2249364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003433912.1|2249437_2250931_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	35.0	1.8e-48
WP_003433910.1|2251258_2251801_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WFX1	Clostridium_phage	58.1	3.0e-57
WP_021359382.1|2252090_2253038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003433905.1|2253065_2253557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003433903.1|2253993_2254887_-	glucosaminidase domain-containing protein	NA	A0A0A7RUS8	Clostridium_phage	48.1	1.2e-31
>prophage 178
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2261846	2263289	4110080		Clostridioides_phage(100.0%)	1	NA	NA
WP_003433893.1|2261846_2263289_-	cell wall-binding repeat-containing protein	NA	A0A2R2ZGK6	Clostridioides_phage	49.4	9.7e-71
>prophage 179
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2270873	2271977	4110080		Pacmanvirus(100.0%)	1	NA	NA
WP_016729098.1|2270873_2271977_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	27.2	1.5e-23
>prophage 180
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2283506	2290003	4110080		Bacillus_phage(66.67%)	5	NA	NA
WP_003433862.1|2283506_2285339_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.7	1.0e-45
WP_003433859.1|2285331_2287578_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.4	6.0e-43
WP_003433857.1|2287645_2288107_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003423380.1|2288411_2288978_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_003423377.1|2289664_2290003_+	helix-turn-helix transcriptional regulator	NA	A0A0A8WIP7	Clostridium_phage	54.6	8.7e-23
>prophage 181
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2298063	2300431	4110080	integrase	Streptococcus_phage(66.67%)	4	2289808:2289822	2309794:2309808
2289808:2289822	attL	TATCAATATTATAAT	NA	NA	NA	NA
WP_003433840.1|2298063_2298471_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	26.7	1.7e-09
WP_003433839.1|2298472_2298703_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003433838.1|2299373_2299727_+|integrase	integrase DNA-binding domain-containing protein	integrase	A0A1S5SEW7	Streptococcus_phage	67.0	1.2e-35
WP_003433837.1|2299798_2300431_+	CatB-related O-acetyltransferase	NA	A0A2R8FE91	Brazilian_cedratvirus	42.2	7.8e-25
2309794:2309808	attR	TATCAATATTATAAT	NA	NA	NA	NA
>prophage 182
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2311698	2312502	4110080		Vibrio_phage(100.0%)	1	NA	NA
WP_003433827.1|2311698_2312502_-	hypothetical protein	NA	A0A2I7QV58	Vibrio_phage	23.6	9.3e-07
>prophage 183
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2320317	2332707	4110080	tRNA,integrase	Streptococcus_phage(60.0%)	10	2319702:2319717	2333585:2333600
2319702:2319717	attL	ATTCTACAAAAAAAAT	NA	NA	NA	NA
WP_003430444.1|2320317_2321715_-|tRNA	asparagine--tRNA ligase	tRNA	M1PB22	Moumouvirus	39.8	4.9e-88
WP_009890435.1|2322193_2322388_-	DUF3787 domain-containing protein	NA	NA	NA	NA	NA
WP_003433821.1|2322660_2324334_-	S8 family peptidase	NA	NA	NA	NA	NA
WP_003433820.1|2324343_2327742_-	S8 family serine peptidase	NA	A0A127AWU5	Bacillus_phage	32.3	2.6e-05
WP_011861504.1|2327909_2329106_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_003433818.1|2329126_2329948_-	MoxR family ATPase	NA	NA	NA	NA	NA
WP_100852703.1|2330187_2331378_-|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	65.5	1.0e-150
WP_006354939.1|2331455_2331659_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	79.1	9.5e-25
WP_003438724.1|2332030_2332285_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_006354941.1|2332287_2332707_-	RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	41.6	8.8e-25
2333585:2333600	attR	ATTTTTTTTGTAGAAT	NA	NA	NA	NA
>prophage 184
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2337826	2338672	4110080		Pithovirus(100.0%)	1	NA	NA
WP_003434331.1|2337826_2338672_-	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	29.9	8.0e-17
>prophage 185
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2342786	2372421	4110080	transposase	Streptococcus_phage(81.25%)	31	NA	NA
WP_003437415.1|2342786_2343698_-	helix-turn-helix domain-containing protein	NA	A0A1B0RXG1	Streptococcus_phage	30.6	3.0e-09
WP_003437414.1|2343976_2345146_+|transposase	IS110 family transposase	transposase	A0A0U3ULR1	Bacillus_phage	23.3	1.4e-22
WP_003437411.1|2345535_2346087_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003437408.1|2346100_2346577_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003437405.1|2346657_2347473_-	effector binding domain-containing protein	NA	NA	NA	NA	NA
WP_021369146.1|2347575_2348148_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	48.4	5.6e-46
WP_003436830.1|2348417_2348693_-	DUF4865 family protein	NA	NA	NA	NA	NA
WP_003436824.1|2348697_2349204_-	VanZ family protein	NA	NA	NA	NA	NA
WP_003436823.1|2349686_2350847_-	MFS transporter	NA	NA	NA	NA	NA
WP_021378256.1|2350839_2353407_-	pyruvate phosphate dikinase PEP/pyruvate-binding domain protein	NA	A0A1V0SGR7	Hokovirus	38.9	1.6e-47
WP_021369143.1|2353403_2354015_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021378259.1|2354158_2355061_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	51.2	3.2e-80
WP_021369027.1|2355080_2356085_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	69.3	4.0e-132
WP_021369033.1|2356081_2358277_-	YtxH domain-containing protein	NA	A0A1S5SF30	Streptococcus_phage	60.6	1.5e-184
WP_009902335.1|2358276_2360727_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.3	0.0e+00
WP_011861948.1|2360704_2361103_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	2.4e-48
WP_009902330.1|2361223_2361727_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	59.6	4.9e-54
WP_009902328.1|2361744_2362248_-	antirestriction protein ArdA	NA	NA	NA	NA	NA
WP_022621734.1|2362166_2362463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003437701.1|2362569_2362947_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003436839.1|2363027_2363189_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	83.0	4.4e-17
WP_003436850.1|2363355_2365266_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.4	6.4e-38
WP_003436853.1|2366007_2366142_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_164662466.1|2366148_2367348_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	61.3	2.8e-140
WP_021369030.1|2367549_2368944_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	65.3	2.6e-174
WP_003437221.1|2369393_2369936_-	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
WP_003437218.1|2369996_2370599_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003437216.1|2370653_2371067_-	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_003437214.1|2371130_2371589_-	VOC family protein	NA	NA	NA	NA	NA
WP_003437211.1|2371669_2372083_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	76.4	9.6e-40
WP_003437208.1|2372097_2372421_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	72.5	1.1e-38
>prophage 186
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2379743	2381126	4110080		Streptococcus_phage(100.0%)	1	NA	NA
WP_003440226.1|2379743_2381126_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.2	2.1e-14
>prophage 187
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2388149	2391587	4110080		Acinetobacter_phage(100.0%)	2	NA	NA
WP_003440248.1|2388149_2389943_-	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	39.4	1.1e-127
WP_003430410.1|2390195_2391587_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.4	1.7e-56
>prophage 188
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2405975	2408096	4110080		Indivirus(100.0%)	1	NA	NA
WP_003440272.1|2405975_2408096_-	DNA topoisomerase III	NA	A0A1V0SCS0	Indivirus	26.8	1.4e-25
>prophage 189
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2411791	2412850	4110080		Tupanvirus(100.0%)	1	NA	NA
WP_021369026.1|2411791_2412850_-	galactitol-1-phosphate 5-dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	29.0	4.1e-18
>prophage 190
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2420015	2420384	4110080		Clostridium_phage(100.0%)	1	NA	NA
WP_009890483.1|2420015_2420384_+	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WJP7	Clostridium_phage	42.4	6.8e-21
>prophage 191
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2424628	2428563	4110080		Bacillus_phage(66.67%)	3	NA	NA
WP_009897457.1|2424628_2426689_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	25.2	6.3e-15
WP_004454566.1|2426884_2427577_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.6	3.1e-35
WP_004454568.1|2428188_2428563_-	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	95.2	4.6e-57
>prophage 192
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2432401	2438340	4110080		Clostridium_phage(100.0%)	6	NA	NA
WP_009897477.1|2432401_2432554_-	hypothetical protein	NA	X5JAJ2	Clostridium_phage	59.2	1.6e-05
WP_004454587.1|2434090_2435014_-	SHOCT domain-containing protein	NA	NA	NA	NA	NA
WP_004454589.1|2435207_2435360_-	hypothetical protein	NA	J9QED5	Clostridium_phage	52.0	9.6e-06
WP_009897482.1|2435633_2435957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004454592.1|2435992_2436247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004454597.1|2437965_2438340_-	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WJU1	Clostridium_phage	88.0	7.1e-50
>prophage 193
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2441371	2457242	4110080		Bacillus_phage(25.0%)	17	NA	NA
WP_004454608.1|2441371_2441572_+	helix-turn-helix transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	45.8	3.7e-05
WP_021369041.1|2441894_2442071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003423148.1|2442295_2442496_+	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	71.4	2.0e-19
WP_004454609.1|2443132_2443945_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004454610.1|2443954_2444746_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_021369049.1|2444747_2445443_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	31.8	1.5e-21
WP_004454614.1|2445429_2446161_+	membrane protein	NA	NA	NA	NA	NA
WP_004454616.1|2446474_2447275_+	PIG-L family deacetylase	NA	NA	NA	NA	NA
WP_004454617.1|2447814_2448531_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.9	2.1e-34
WP_004454619.1|2448499_2450092_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	23.2	3.3e-11
WP_004454621.1|2450403_2451906_-	phosphoglucomutase	NA	NA	NA	NA	NA
WP_003430699.1|2452015_2452681_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003430700.1|2452710_2453157_-	ribose 5-phosphate isomerase B	NA	A0A222YX14	Synechococcus_phage	31.7	3.3e-14
WP_003430702.1|2453331_2454252_-	transketolase family protein	NA	NA	NA	NA	NA
WP_003430704.1|2454254_2455067_-	transketolase	NA	NA	NA	NA	NA
WP_004454625.1|2455158_2456190_-	zinc-binding dehydrogenase	NA	K7Z7U2	Megavirus	28.1	1.4e-15
WP_004454628.1|2456189_2457242_-	galactitol-1-phosphate 5-dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	25.2	4.8e-11
>prophage 194
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2463166	2463817	4110080		Synechococcus_phage(100.0%)	1	NA	NA
WP_003423115.1|2463166_2463817_-	fructose-6-phosphate aldolase	NA	R9TM64	Synechococcus_phage	50.9	5.5e-50
>prophage 195
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2470648	2472148	4110080		Klosneuvirus(100.0%)	1	NA	NA
WP_003423106.1|2470648_2472148_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	33.2	1.8e-56
>prophage 196
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2494098	2495046	4110080		Bacillus_virus(100.0%)	1	NA	NA
WP_003416869.1|2494098_2495046_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	43.7	1.3e-63
>prophage 197
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2499858	2500611	4110080		Bacillus_virus(100.0%)	1	NA	NA
WP_003430772.1|2499858_2500611_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.2	9.3e-33
>prophage 198
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2514725	2535074	4110080	integrase	Streptococcus_phage(100.0%)	26	2507380:2507396	2549564:2549580
2507380:2507396	attL	TACTATTTTTGAAAAAA	NA	NA	NA	NA
WP_009271880.1|2514725_2515916_-|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	67.3	3.1e-155
WP_004613735.1|2515993_2516197_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	82.1	2.5e-25
WP_025487352.1|2516571_2516811_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_008787630.1|2516803_2517232_-	hypothetical protein	NA	A0A1S5SEW0	Streptococcus_phage	43.1	3.2e-22
WP_008787629.1|2517511_2517736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008787628.1|2517767_2518193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023948524.1|2518874_2518958_+	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_002292226.1|2519082_2519820_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
WP_008787625.1|2520427_2520844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008787624.1|2520840_2521044_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_008787623.1|2521144_2522056_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	53.6	2.2e-84
WP_008787622.1|2522073_2523081_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	67.6	6.4e-130
WP_008787621.1|2523077_2525282_-	MFS transporter	NA	A0A1S5SF30	Streptococcus_phage	51.1	1.6e-181
WP_008787620.1|2525281_2527732_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.4	0.0e+00
WP_009243016.1|2527709_2528108_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	4.1e-48
WP_002323345.1|2528224_2528728_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	60.8	7.5e-55
WP_008787619.1|2528745_2529249_-	antirestriction protein ArdA	NA	NA	NA	NA	NA
WP_008787618.1|2529167_2529464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008787617.1|2529573_2530194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323342.1|2530283_2530505_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
WP_017143882.1|2530505_2530640_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_008787615.1|2530652_2531849_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	62.3	4.7e-148
WP_048923954.1|2532032_2533427_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	65.5	2.8e-176
WP_048923953.1|2533491_2534250_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003432338.1|2534348_2534732_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	55.9	2.3e-32
WP_005339720.1|2534747_2535074_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	52.4	1.5e-24
2549564:2549580	attR	TACTATTTTTGAAAAAA	NA	NA	NA	NA
>prophage 199
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2551987	2554125	4110080	protease	Erwinia_phage(50.0%)	3	NA	NA
WP_004454685.1|2551987_2552590_-	peptidoglycan-binding protein	NA	A0A2P1JUA1	Erwinia_phage	44.1	1.7e-08
WP_011861541.1|2552606_2553755_-|protease	protease	protease	NA	NA	NA	NA
WP_003430818.1|2553747_2554125_-	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	53.2	1.6e-30
>prophage 200
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2557738	2558245	4110080		Clostridium_phage(100.0%)	1	NA	NA
WP_004454691.1|2557738_2558245_-	3'-5' exonuclease	NA	A0A0A7RWA3	Clostridium_phage	41.2	2.9e-22
>prophage 201
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2561437	2578016	4110080	coat,tRNA	Escherichia_phage(16.67%)	13	NA	NA
WP_003416734.1|2561437_2562298_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	32.8	9.9e-31
WP_003416732.1|2562566_2562776_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
WP_004454698.1|2562775_2563042_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
WP_003416728.1|2563070_2563643_+	manganese catalase family protein	NA	NA	NA	NA	NA
WP_004454699.1|2563877_2565068_-	C40 family peptidase	NA	A0A0K2SUC1	Clostridium_phage	44.8	1.7e-28
WP_004454700.1|2565327_2565759_-	dUTP diphosphatase	NA	A0A1L2BX65	Bacteriophage	51.0	4.6e-37
WP_004454701.1|2565871_2568100_+	type IA DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	29.0	1.1e-28
WP_004454702.1|2568210_2568696_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009897600.1|2568947_2570171_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003430847.1|2570174_2573309_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	26.8	1.6e-110
WP_021369055.1|2573342_2574641_+	TolC family protein	NA	NA	NA	NA	NA
WP_009890610.1|2574929_2575175_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_009890612.1|2575388_2578016_-	pyruvate, phosphate dikinase	NA	H8YJB7	Vibrio_phage	41.0	4.3e-93
>prophage 202
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2611001	2612117	4110080		Pseudomonas_phage(100.0%)	1	NA	NA
WP_003430896.1|2611001_2612117_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	42.6	1.0e-48
>prophage 203
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2615224	2615668	4110080		Xanthomonas_phage(100.0%)	1	NA	NA
WP_003430905.1|2615224_2615668_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	44.2	3.0e-23
>prophage 204
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2619897	2622306	4110080		Clostridioides_phage(100.0%)	1	NA	NA
WP_004454738.1|2619897_2622306_-	CRISPR-associated helicase/endonuclease Cas3	NA	A0A2R2ZGW0	Clostridioides_phage	75.7	0.0e+00
>prophage 205
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2626653	2635270	4110080		Mycoplasma_phage(25.0%)	6	NA	NA
WP_004454747.1|2626653_2627763_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	33.8	4.9e-22
WP_004454748.1|2627792_2628560_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004454749.1|2628747_2630121_-	MFS transporter	NA	S4TR35	Salmonella_phage	22.0	2.5e-07
WP_003416574.1|2630156_2631092_-	ROK family protein	NA	NA	NA	NA	NA
WP_004454751.1|2632057_2633212_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	30.6	5.1e-30
WP_003430934.1|2633422_2635270_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	52.4	3.7e-131
>prophage 206
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2640026	2643318	4110080	tRNA	unidentified_phage(50.0%)	2	NA	NA
WP_004454759.1|2640026_2641364_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	45.8	1.1e-97
WP_004454760.1|2641512_2643318_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	26.4	2.6e-25
>prophage 207
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2653292	2661251	4110080	tRNA	Clostridium_botulinum_C_phage(25.0%)	8	NA	NA
WP_021364653.1|2653292_2654129_+	MBL fold metallo-hydrolase	NA	Q332C0	Clostridium_botulinum_C_phage	39.3	9.9e-44
WP_004454770.1|2654270_2654978_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_021364658.1|2655468_2656308_-	G5 domain-containing protein	NA	L0LBX4	Bacillus_phage	44.1	7.7e-12
WP_003416528.1|2656556_2657231_-	uracil-DNA glycosylase	NA	S4VYQ4	Pandoravirus	45.3	5.2e-51
WP_004454772.1|2657267_2657639_-	NusG domain II-containing protein	NA	NA	NA	NA	NA
WP_004454773.1|2657705_2658764_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_004454774.1|2658954_2660133_-	putative C-S lyase	NA	NA	NA	NA	NA
WP_004454775.1|2660186_2661251_-	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	23.6	5.5e-15
>prophage 208
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2668062	2672789	4110080		Hokovirus(50.0%)	2	NA	NA
WP_004454784.1|2668062_2670801_-	sporulation-associated two-component system sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	27.2	2.1e-26
WP_004454786.1|2670905_2672789_-	selenocysteine-specific translation elongation factor	NA	A0A2K9KZ60	Tupanvirus	30.3	3.1e-21
>prophage 209
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2681132	2684933	4110080		Faustovirus(50.0%)	2	NA	NA
WP_004454799.1|2681132_2682236_+	histidinol-phosphate aminotransferase family protein	NA	A0A142C026	Faustovirus	25.4	8.3e-14
WP_004454800.1|2682293_2684933_-	cation-translocating P-type ATPase	NA	M1HJQ2	Paramecium_bursaria_Chlorella_virus	31.7	2.6e-98
>prophage 210
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2701873	2703696	4110080		Clostridium_phage(50.0%)	2	NA	NA
WP_004454815.1|2701873_2702032_-	hypothetical protein	NA	J9QED5	Clostridium_phage	65.4	1.3e-08
WP_021373596.1|2702325_2703696_-	cell wall-binding protein Cwp29	NA	A0A2R2ZGK6	Clostridioides_phage	45.1	2.6e-73
>prophage 211
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2707032	2711536	4110080	tRNA	Staphylococcus_phage(50.0%)	4	NA	NA
WP_021362796.1|2707032_2709453_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	48.6	9.1e-215
WP_003416416.1|2709806_2710157_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003431048.1|2710273_2710846_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	NA	NA	NA	NA	NA
WP_003416411.1|2710846_2711536_-	nicotinate-nucleotide adenylyltransferase	NA	G3MA22	Bacillus_virus	30.0	9.1e-19
>prophage 212
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2722025	2724136	4110080		Planktothrix_phage(50.0%)	2	NA	NA
WP_004454838.1|2722025_2722709_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.3e-37
WP_004454840.1|2722825_2724136_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	25.3	5.8e-14
>prophage 213
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2733706	2735125	4110080		Pseudomonas_phage(100.0%)	1	NA	NA
WP_009897741.1|2733706_2735125_-	MBOAT family protein	NA	A0A125RNP0	Pseudomonas_phage	33.8	6.2e-54
>prophage 214
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2750329	2750827	4110080		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_003416314.1|2750329_2750827_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	40.1	2.0e-23
>prophage 215
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2765481	2768506	4110080		Bacillus_phage(100.0%)	2	NA	NA
WP_021389943.1|2765481_2767815_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	26.5	6.2e-19
WP_003431132.1|2767789_2768506_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.2	2.6e-32
>prophage 216
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2773543	2775559	4110080		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_004454897.1|2773543_2775559_-	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	A0A2H4UVE2	Bodo_saltans_virus	30.1	9.2e-27
>prophage 217
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2780305	2786562	4110080	tRNA	Prochlorococcus_phage(25.0%)	6	NA	NA
WP_003431156.1|2780305_2781235_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	31.9	8.8e-09
WP_003431159.1|2781249_2781690_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	47.1	7.6e-19
WP_004454900.1|2781707_2784233_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_004454901.1|2784471_2785671_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	33.2	9.2e-51
WP_003431167.1|2785675_2785942_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_004454902.1|2785944_2786562_-	guanylate kinase	NA	U5J9X2	Bacillus_phage	37.8	3.1e-18
>prophage 218
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2791913	2795076	4110080		Streptococcus_phage(50.0%)	2	NA	NA
WP_021369082.1|2791913_2793566_-	ABC-F type ribosomal protection protein	NA	A0A1B0RXA0	Streptococcus_phage	35.3	1.7e-66
WP_004454910.1|2793864_2795076_-	ABC transporter permease	NA	Q9KX94	Enterobacteria_phage	34.2	1.3e-55
>prophage 219
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2801848	2805595	4110080		Clostridioides_phage(66.67%)	4	NA	NA
WP_004454923.1|2801848_2803051_-	histidine kinase	NA	Q9EYF3	Enterobacteria_phage	36.9	3.2e-19
WP_004454924.1|2803916_2804663_+	LytTR family response regulator CdtR	NA	A0A1V0E029	Clostridioides_phage	57.5	3.8e-79
WP_004454925.1|2805051_2805234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004454926.1|2805451_2805595_+	hypothetical protein	NA	A0A1V0E017	Clostridioides_phage	71.4	6.7e-09
>prophage 220
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2812977	2819413	4110080	tRNA	Streptococcus_phage(50.0%)	5	NA	NA
WP_004454935.1|2812977_2813820_-	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	27.1	1.3e-22
WP_004454936.1|2814003_2814576_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021389778.1|2814738_2815011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003426922.1|2815137_2816010_-	YitT family protein	NA	NA	NA	NA	NA
WP_004454939.1|2816305_2819413_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	32.4	2.3e-162
>prophage 221
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2842989	2848210	4110080		Bacillus_phage(75.0%)	7	NA	NA
WP_003426968.1|2842989_2844279_-	HAMP domain-containing sensor histidine kinase	NA	W8CYF6	Bacillus_phage	37.7	3.4e-35
WP_003416112.1|2844307_2845000_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	41.0	5.3e-43
WP_004454956.1|2845014_2845776_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_004454958.1|2845772_2846234_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003416105.1|2846255_2846519_-	YlmC/YmxH family sporulation protein	NA	NA	NA	NA	NA
WP_003416101.1|2846622_2847396_-	RNA polymerase sporulation sigma factor SigG	NA	A0A0A0RV91	Bacillus_phage	41.0	1.6e-43
WP_021369071.1|2847487_2848210_-	RNA polymerase sporulation sigma factor SigE	NA	A0A2H4JC68	uncultured_Caudovirales_phage	43.5	6.8e-17
>prophage 222
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2866436	2869003	4110080		Bacillus_virus(50.0%)	2	NA	NA
WP_021363772.1|2866436_2867723_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	27.2	4.6e-24
WP_004454972.1|2867737_2869003_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	27.5	1.2e-35
>prophage 223
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2881816	2883766	4110080		Bacillus_virus(50.0%)	2	NA	NA
WP_003427052.1|2881816_2882788_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.3	7.3e-14
WP_004454983.1|2882788_2883766_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	26.9	1.6e-16
>prophage 224
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2894178	2895105	4110080		Bacillus_phage(100.0%)	1	NA	NA
WP_018112861.1|2894178_2895105_+	sporulation protein	NA	U5Q0C0	Bacillus_phage	62.4	2.4e-38
>prophage 225
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2904180	2907322	4110080		Bacillus_virus(50.0%)	4	NA	NA
WP_003416009.1|2904180_2904402_-	alpha/beta-type small acid-soluble spore protein	NA	G3MAF8	Bacillus_virus	50.0	1.3e-11
WP_003427089.1|2904485_2905712_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_004455002.1|2905773_2906706_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003416006.1|2906794_2907322_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	28.0	4.2e-08
>prophage 226
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2910574	2911576	4110080		Heterosigma_akashiwo_virus(100.0%)	1	NA	NA
WP_003427105.1|2910574_2911576_-	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	42.3	1.8e-60
>prophage 227
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2922432	2923776	4110080		Moraxella_phage(100.0%)	1	NA	NA
WP_003421552.1|2922432_2923776_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	32.2	7.4e-49
>prophage 228
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2937374	2939281	4110080		Tupanvirus(50.0%)	2	NA	NA
WP_003431452.1|2937374_2938388_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	50.8	2.4e-92
WP_014466379.1|2938411_2939281_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	53.7	1.5e-82
>prophage 229
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2959504	2960749	4110080		Heliothis_zea_nudivirus(100.0%)	1	NA	NA
WP_003422953.1|2959504_2960749_-	serine hydroxymethyltransferase	NA	Q8JKP0	Heliothis_zea_nudivirus	48.0	4.7e-98
>prophage 230
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2971961	2976260	4110080	tRNA	Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_009903317.1|2971961_2972768_-	carbon-nitrogen hydrolase	NA	M1I5Z5	Acanthocystis_turfacea_Chlorella_virus	29.8	4.5e-17
WP_004454141.1|2972781_2974014_-	cytosine permease	NA	NA	NA	NA	NA
WP_004454140.1|2974472_2976260_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2I2L4Y8	Orpheovirus	31.7	3.8e-08
>prophage 231
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2980335	2990531	4110080		Bacillus_phage(40.0%)	8	NA	NA
WP_003422921.1|2980335_2982543_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	U5J9N6	Bacillus_phage	45.9	2.7e-16
WP_003426450.1|2982616_2983129_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	49.7	1.0e-35
WP_004454135.1|2983141_2985592_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	35.5	3.0e-88
WP_004454134.1|2985604_2987269_-	AarF/ABC1/UbiB kinase family protein	NA	E5ES62	Bathycoccus_sp._RCC1105_virus	34.0	8.6e-47
WP_004454132.1|2987566_2988064_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_003426456.1|2988092_2989472_-	thioether cross-link-forming SCIFF peptide maturase	NA	NA	NA	NA	NA
WP_003426457.1|2989776_2989923_-	cyclic lactone autoinducer peptide	NA	NA	NA	NA	NA
WP_004454130.1|2989952_2990531_-	accessory gene regulator B family protein	NA	X5JB40	Clostridium_phage	32.8	4.6e-16
>prophage 232
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	2996571	2998122	4110080		Bacillus_virus(100.0%)	1	NA	NA
WP_011861669.1|2996571_2998122_-	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	32.5	1.2e-13
>prophage 233
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3002406	3010879	4110080		Paramecium_bursaria_Chlorella_virus(25.0%)	8	NA	NA
WP_003431790.1|3002406_3004140_-	N-6 DNA methylase	NA	A7RAG0	Paramecium_bursaria_Chlorella_virus	23.5	3.8e-05
WP_003426473.1|3004179_3004578_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_004454122.1|3004580_3006128_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_004454121.1|3006442_3007348_-	N-acetylmuramoyl-L-alanine amidase	NA	E5DV68	Deep-sea_thermophilic_phage	35.2	2.2e-20
WP_003422884.1|3007390_3008035_-	di-trans,poly-cis-decaprenylcistransferase	NA	A0A076FI83	Aureococcus_anophage	24.7	1.2e-12
WP_009891020.1|3008173_3008644_+	DUF4358 domain-containing protein	NA	NA	NA	NA	NA
WP_004454119.1|3008766_3009555_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_004454117.1|3009922_3010879_+	LCP family protein	NA	A0A1X9I5X1	Streptococcus_phage	27.3	2.3e-12
>prophage 234
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3014739	3044067	4110080	protease	Clostridium_phage(26.67%)	22	NA	NA
WP_003431770.1|3014739_3015447_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	51.2	2.1e-31
WP_009897930.1|3015645_3017559_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
WP_003431768.1|3017642_3018734_-	glycosyltransferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
WP_169460753.1|3018739_3020083_-	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	43.6	2.3e-90
WP_003426498.1|3020060_3020813_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
WP_004454111.1|3020860_3021769_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003422862.1|3021790_3022540_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
WP_009891031.1|3022568_3023744_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_009897935.1|3023758_3024598_-	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	26.3	7.0e-05
WP_004454109.1|3024600_3025758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004454108.1|3025773_3026496_-	glycosyl transferase	NA	A0A1V0SBR5	Catovirus	34.3	9.3e-06
WP_003426511.1|3026507_3027581_-	mannose-1-phosphate guanylyltransferase	NA	A0A1V0SH58	Hokovirus	29.6	1.3e-32
WP_004454107.1|3027602_3029309_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	45.1	2.2e-138
WP_004454106.1|3029354_3030911_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_004454105.1|3031025_3032081_-	cell wall-binding protein Cwp7	NA	A0A0A8WJG0	Clostridium_phage	28.9	5.9e-17
WP_009891044.1|3032175_3032862_-	sugar transferase	NA	NA	NA	NA	NA
WP_004454104.1|3033081_3035106_-	N-acetylmuramoyl-L-alanine amidase	NA	J9PV86	Bacillus_phage	34.9	9.5e-16
WP_192574390.1|3035359_3036841_-	DUF5009 domain-containing protein	NA	NA	NA	NA	NA
WP_004454101.1|3036974_3038552_-	cell wall-binding protein Cwp5	NA	A7KUY3	Bacillus_phage	28.6	2.9e-12
WP_021368338.1|3038848_3041260_-|protease	cell wall-binding cysteine protease Cwp84	protease	A0A0A8WJG0	Clostridium_phage	35.6	2.9e-27
WP_004454098.1|3041486_3041882_+	GtrA family protein	NA	NA	NA	NA	NA
WP_004454096.1|3041934_3044067_-	cell wall-binding repeat-containing protein	NA	A0A0A8WJG0	Clostridium_phage	30.8	5.9e-24
>prophage 235
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3049788	3055695	4110080		Clostridioides_phage(100.0%)	3	NA	NA
WP_004454090.1|3049788_3051987_-	S-layer protein SlpA	NA	A0A2R2ZGK6	Clostridioides_phage	29.0	5.1e-15
WP_004454089.1|3052276_3053875_-	cell wall-binding repeat-containing protein	NA	A0A2R2ZGK6	Clostridioides_phage	42.1	1.4e-62
WP_021364727.1|3054093_3055695_-	cell wall-binding protein Cwp11	NA	A0A2R2ZGK6	Clostridioides_phage	39.0	1.1e-59
>prophage 236
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3064489	3073992	4110080	tRNA	Clostridioides_phage(25.0%)	9	NA	NA
WP_009897968.1|3064489_3065893_-	cell wall-binding protein Cwp9	NA	A0A2R2ZGK6	Clostridioides_phage	45.0	2.0e-65
WP_021359597.1|3066354_3068250_-	cell wall-binding protein Cwp8	NA	A0A0A8WJG0	Clostridium_phage	28.4	9.3e-05
WP_009891067.1|3068876_3069020_-	six-cysteine ranthipeptide SCIFF	NA	NA	NA	NA	NA
WP_004454083.1|3069085_3069448_-	TIGR04086 family membrane protein	NA	NA	NA	NA	NA
WP_003426573.1|3069505_3069799_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_009897970.1|3069932_3071054_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	48.5	1.3e-94
WP_003426576.1|3071132_3071618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004454081.1|3071629_3072655_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003426579.1|3072972_3073992_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	32.9	8.8e-10
>prophage 237
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3083903	3087891	4110080		Bacillus_phage(66.67%)	3	NA	NA
WP_003426603.1|3083903_3084212_+	hypothetical protein	NA	A0A0A8WF25	Clostridium_phage	57.3	2.9e-25
WP_003426617.1|3084373_3086164_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	33.0	1.2e-54
WP_009897981.1|3086163_3087891_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.0	3.2e-36
>prophage 238
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3106092	3110295	4110080		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
WP_003436125.1|3106092_3108867_-	calcium-translocating P-type ATPase, PMCA-type	NA	M1HX51	Paramecium_bursaria_Chlorella_virus	29.1	1.3e-84
WP_003436123.1|3109038_3110295_-	serine hydroxymethyltransferase	NA	G9I092	Helicoverpa_zea_nudivirus	40.9	1.6e-77
>prophage 239
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3117539	3122543	4110080	tRNA	uncultured_Mediterranean_phage(50.0%)	3	NA	NA
WP_003436782.1|3117539_3118811_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	43.5	8.2e-90
WP_003436785.1|3119626_3121231_-	amidohydrolase	NA	NA	NA	NA	NA
WP_003436788.1|3121616_3122543_+	carbon-nitrogen hydrolase family protein	NA	M1H5W0	Paramecium_bursaria_Chlorella_virus	23.5	1.5e-11
>prophage 240
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3125702	3127230	4110080	transposase	Geobacillus_virus(100.0%)	2	NA	NA
WP_076629471.1|3125702_3126821_-|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.0	2.0e-108
WP_003439244.1|3126822_3127230_-|transposase	IS200/IS605 family transposase	transposase	A0A0H3UZM0	Geobacillus_virus	44.5	8.0e-23
>prophage 241
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3133604	3135119	4110080		Tupanvirus(100.0%)	1	NA	NA
WP_003439576.1|3133604_3135119_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	31.5	3.2e-56
>prophage 242
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3162730	3163513	4110080		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_003439676.1|3162730_3163513_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.4	2.4e-15
>prophage 243
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3174475	3178424	4110080		Bacillus_virus(50.0%)	3	NA	NA
WP_003439713.1|3174475_3175630_+	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	26.5	2.7e-07
WP_003439716.1|3175711_3177430_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003439719.1|3177434_3178424_-	ATP-binding cassette domain-containing protein	NA	Q6GZ03	Mycoplasma_phage	34.1	3.0e-23
>prophage 244
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3218535	3219282	4110080		Bacillus_phage(100.0%)	1	NA	NA
WP_003439795.1|3218535_3219282_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	36.3	1.2e-16
>prophage 245
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3223496	3235706	4110080	transposase	Bacillus_phage(40.0%)	11	NA	NA
WP_003439802.1|3223496_3224375_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.3	6.2e-20
WP_003439810.1|3224367_3225150_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003439812.1|3225150_3225780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003439815.1|3226174_3226801_-	GyrI-like domain-containing protein	NA	NA	NA	NA	NA
WP_003439817.1|3226876_3227848_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A218KC18	Bacillus_phage	59.4	8.1e-106
WP_003439819.1|3227860_3229960_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A218KC36	Bacillus_phage	55.2	5.8e-218
WP_009898087.1|3230437_3231163_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_003439823.1|3231290_3232487_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.6	6.7e-17
WP_003439825.1|3232489_3233515_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_009891301.1|3233586_3234717_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003439830.1|3235310_3235706_-|transposase	IS200/IS605 family transposase	transposase	A0A286QN76	Streptococcus_phage	63.6	5.5e-45
>prophage 246
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3239606	3240374	4110080		Planktothrix_phage(100.0%)	1	NA	NA
WP_003439835.1|3239606_3240374_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.1	2.1e-32
>prophage 247
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3252322	3253711	4110080		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_003439857.1|3252322_3253711_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	42.4	2.4e-95
>prophage 248
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3273980	3274580	4110080		Tetraselmis_virus(100.0%)	1	NA	NA
WP_003432026.1|3273980_3274580_-	SIS domain-containing protein	NA	A0A2P0VNK5	Tetraselmis_virus	37.1	3.9e-26
>prophage 249
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3280900	3281218	4110080		Streptomyces_phage(100.0%)	1	NA	NA
WP_021362925.1|3280900_3281218_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	37.0	2.6e-13
>prophage 250
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3287312	3289868	4110080		Bacillus_phage(100.0%)	2	NA	NA
WP_003439898.1|3287312_3288734_-	hypothetical protein	NA	A0A223LDP1	Bacillus_phage	31.8	1.3e-46
WP_003439899.1|3288737_3289868_-	ATP-binding protein	NA	A0A223LDC9	Bacillus_phage	33.1	1.5e-50
>prophage 251
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3307149	3307902	4110080		Planktothrix_phage(100.0%)	1	NA	NA
WP_003439918.1|3307149_3307902_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.9	2.1e-32
>prophage 252
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3329916	3337124	4110080		Leptospira_phage(50.0%)	6	NA	NA
WP_003439941.1|3329916_3333252_-	DEAD/DEAH box helicase family protein	NA	Q6NDX2	Leptospira_phage	26.6	5.1e-14
WP_003439943.1|3333300_3333729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003439944.1|3333718_3334099_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_003439946.1|3334131_3334440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003439948.1|3334472_3335657_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_003439950.1|3335660_3337124_-	SAM-dependent DNA methyltransferase	NA	A0A1W6JNK1	Staphylococcus_phage	28.7	4.2e-21
>prophage 253
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3348306	3349461	4110080		Streptococcus_phage(100.0%)	1	NA	NA
WP_003439969.1|3348306_3349461_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	37.4	1.0e-46
>prophage 254
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3365566	3367000	4110080		Pandoravirus(100.0%)	1	NA	NA
WP_003439996.1|3365566_3367000_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	25.2	3.5e-28
>prophage 255
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3379576	3380218	4110080		Synechococcus_phage(100.0%)	1	NA	NA
WP_003440006.1|3379576_3380218_+	hypothetical protein	NA	A0A0E3FKM5	Synechococcus_phage	34.6	3.8e-27
>prophage 256
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3392117	3393572	4110080		Pandoravirus(100.0%)	1	NA	NA
WP_003440025.1|3392117_3393572_-	family 1 glycosylhydrolase	NA	A0A0B5JD41	Pandoravirus	24.6	4.9e-22
>prophage 257
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3397554	3399199	4110080		Cryptophlebia_leucotreta_granulosis_virus(50.0%)	2	NA	NA
WP_003440033.1|3397554_3398742_-	glucosyltransferase	NA	Q7T5G5	Cryptophlebia_leucotreta_granulosis_virus	28.1	8.1e-07
WP_011861830.1|3398773_3399199_-	helix-turn-helix transcriptional regulator	NA	A0A1P8BKS6	Lactococcus_phage	49.1	3.2e-06
>prophage 258
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3408328	3409000	4110080		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_003431322.1|3408328_3409000_-	beta-phosphoglucomutase	NA	M1I080	Acanthocystis_turfacea_Chlorella_virus	28.1	9.2e-08
>prophage 259
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3423439	3424402	4110080		Streptococcus_phage(100.0%)	1	NA	NA
WP_003440089.1|3423439_3424402_-	WYL domain-containing protein	NA	A0A1B0RXM1	Streptococcus_phage	29.0	2.7e-13
>prophage 260
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3430613	3431276	4110080		Planktothrix_phage(100.0%)	1	NA	NA
WP_009903509.1|3430613_3431276_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.3e-25
>prophage 261
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3451063	3459672	4110080	integrase	Bacillus_phage(33.33%)	12	3451525:3451541	3469640:3469656
WP_076629473.1|3451063_3452398_-	AAA family ATPase	NA	A0A191ZDG5	Pseudoalteromonas_virus	28.0	7.6e-30
3451525:3451541	attL	TTATTTCTCTCTTTATT	NA	NA	NA	NA
WP_003433763.1|3452410_3453154_-	hypothetical protein	NA	A0A0B5D175	Listeria_phage	50.0	5.0e-23
WP_003433761.1|3453175_3453490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003433759.1|3453493_3453694_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_021369103.1|3453840_3454605_+	helix-turn-helix transcriptional regulator	NA	Q786F1	Bacillus_phage	45.6	3.7e-05
WP_003433754.1|3454856_3455348_+	helix-turn-helix domain-containing protein	NA	F6MII3	Haemophilus_phage	38.1	9.1e-05
WP_021424036.1|3455439_3456192_+	Fic family protein	NA	NA	NA	NA	NA
WP_021369120.1|3456181_3457348_+|integrase	site-specific integrase	integrase	A0A1B0T6A8	Bacillus_phage	31.6	3.4e-34
WP_003433747.1|3457463_3457694_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003433745.1|3457699_3458179_-	DUF3990 domain-containing protein	NA	NA	NA	NA	NA
WP_003433743.1|3458178_3458394_-	DUF3791 domain-containing protein	NA	NA	NA	NA	NA
WP_003421925.1|3459216_3459672_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	54.5	2.6e-38
3469640:3469656	attR	TTATTTCTCTCTTTATT	NA	NA	NA	NA
>prophage 262
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3464755	3470048	4110080		Anomala_cuprea_entomopoxvirus(50.0%)	3	NA	NA
WP_003433732.1|3464755_3465628_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.5	6.3e-25
WP_003433730.1|3466156_3466648_-	YfbM family protein	NA	NA	NA	NA	NA
WP_003434984.1|3467912_3470048_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.4	7.3e-83
>prophage 263
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3475376	3476669	4110080		Streptococcus_phage(100.0%)	1	NA	NA
WP_009898301.1|3475376_3476669_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	67.7	6.9e-161
>prophage 264
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3485375	3492258	4110080		Acinetobacter_phage(50.0%)	4	NA	NA
WP_003434151.1|3485375_3487937_-	selenium-dependent xanthine dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	30.8	4.4e-10
WP_003434153.1|3487930_3489322_-	dihydropyrimidinase	NA	NA	NA	NA	NA
WP_003434155.1|3489604_3490714_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003434158.1|3490905_3492258_-	purine permease	NA	Q9KX94	Enterobacteria_phage	30.6	5.5e-36
>prophage 265
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3508122	3524254	4110080		Clostridium_phage(14.29%)	14	NA	NA
WP_003434288.1|3508122_3509049_-	conserved phage C-terminal domain-containing protein	NA	Q8SBM0	Clostridium_phage	43.9	8.5e-12
WP_003434289.1|3509638_3510559_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003434290.1|3510644_3513065_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	34.6	8.4e-144
WP_003434291.1|3513064_3514087_+	serine hydrolase	NA	NA	NA	NA	NA
WP_003434292.1|3514239_3514986_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003434293.1|3515071_3516322_+	multidrug efflux MFS transporter Cme	NA	D0R099	Streptococcus_phage	30.4	2.7e-37
WP_021364818.1|3516838_3517852_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003434295.1|3517854_3518883_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003434296.1|3518882_3519728_-	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	31.9	1.0e-16
WP_003434298.1|3520158_3521289_-	HAMP domain-containing histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.7e-06
WP_003434299.1|3521285_3521957_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	40.4	1.5e-42
WP_003434300.1|3522159_3522810_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_009891651.1|3522866_3523097_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003434301.1|3523660_3524254_+	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	28.7	1.6e-08
>prophage 266
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3531902	3536869	4110080		Bacillus_virus(50.0%)	3	NA	NA
WP_003438780.1|3531902_3532664_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.3	3.7e-29
WP_003438782.1|3532679_3534215_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003438783.1|3534628_3536869_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	34.1	2.9e-138
>prophage 267
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3553992	3554532	4110080		uncultured_virus(100.0%)	1	NA	NA
WP_004454045.1|3553992_3554532_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	30.5	3.0e-09
>prophage 268
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3559331	3559967	4110080		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_003422086.1|3559331_3559967_-	single-stranded DNA-binding protein	NA	A0A2H4J8K3	uncultured_Caudovirales_phage	52.9	1.6e-54
>prophage 269
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3574966	3576225	4110080		Tupanvirus(50.0%)	2	NA	NA
WP_004454018.1|3574966_3575731_-	polysaccharide deacetylase family protein	NA	A0A2K9LAZ4	Tupanvirus	28.3	5.2e-07
WP_003422115.1|3576021_3576225_+	alpha/beta-type small acid-soluble spore protein	NA	G3MAF8	Bacillus_virus	48.4	6.0e-11
>prophage 270
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3581836	3585638	4110080	tRNA	Clostridioides_phage(50.0%)	2	NA	NA
WP_003432343.1|3581836_3582547_-	two-component system response regulator RgaR	NA	A0A2R2ZGH8	Clostridioides_phage	36.9	1.5e-37
WP_004454011.1|3582971_3585638_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	43.0	1.0e-174
>prophage 271
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3590372	3591137	4110080		Bacillus_phage(100.0%)	1	NA	NA
WP_003432349.1|3590372_3591137_-	phosphate ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	33.5	1.5e-14
>prophage 272
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3594242	3597737	4110080		Bacillus_phage(100.0%)	3	NA	NA
WP_003432361.1|3594242_3594923_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	27.7	1.9e-16
WP_021390475.1|3594972_3596988_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417201.1|3597059_3597737_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	28.3	7.6e-26
>prophage 273
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3601576	3602242	4110080		Bacillus_virus(100.0%)	1	NA	NA
WP_004453991.1|3601576_3602242_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	43.2	8.5e-22
>prophage 274
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3612837	3618672	4110080		Streptococcus_phage(33.33%)	4	NA	NA
WP_003435641.1|3612837_3613641_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	34.2	2.4e-34
WP_021363977.1|3613965_3616335_-	glycyl radical protein	NA	A0A2K8HKE5	Bacteriophage	45.3	2.8e-06
WP_003432388.1|3616339_3617248_-	glycyl-radical enzyme activating protein	NA	NA	NA	NA	NA
WP_003435637.1|3617592_3618672_-	trypsin-like peptidase domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	25.7	3.3e-15
>prophage 275
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3635877	3641372	4110080	protease	Moraxella_phage(33.33%)	5	NA	NA
WP_003435613.1|3635877_3638241_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	44.5	1.1e-175
WP_003417110.1|3638420_3638933_+	chromate transporter	NA	NA	NA	NA	NA
WP_003427941.1|3638920_3639448_+	chromate transporter	NA	NA	NA	NA	NA
WP_003417105.1|3639518_3640769_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.1	6.1e-146
WP_003417102.1|3640787_3641372_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	58.8	9.3e-57
>prophage 276
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3644980	3647005	4110080		Ralstonia_phage(100.0%)	1	NA	NA
WP_009891779.1|3644980_3647005_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	37.6	3.8e-113
>prophage 277
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3657457	3673894	4110080		Clostridium_phage(25.0%)	17	NA	NA
WP_003437316.1|3657457_3658117_-	two-component system response regulator CprR	NA	W8CYM9	Bacillus_phage	33.6	4.2e-29
WP_003437313.1|3658427_3659057_+	DUF3786 domain-containing protein	NA	NA	NA	NA	NA
WP_003437310.1|3659124_3659958_+	prenyltransferase	NA	NA	NA	NA	NA
WP_003437307.1|3660053_3660842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003437302.1|3660842_3661715_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.8	3.0e-27
WP_022621801.1|3661729_3663439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003437295.1|3663521_3663896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003437293.1|3664152_3664734_-	accessory gene regulator B family protein	NA	X5JB40	Clostridium_phage	30.4	1.0e-18
WP_003437290.1|3664792_3664933_-	cyclic lactone autoinducer peptide	NA	NA	NA	NA	NA
WP_003437288.1|3664944_3666261_-	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	33.2	4.4e-54
WP_003437285.1|3666254_3666965_-	response regulator transcription factor	NA	A0A2R2ZGH8	Clostridioides_phage	36.2	2.2e-28
WP_003437281.1|3667403_3667979_-	DUF1062 domain-containing protein	NA	NA	NA	NA	NA
WP_003437274.1|3668271_3668550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003437271.1|3668858_3669620_-	epoxyqueuosine reductase	NA	NA	NA	NA	NA
WP_074137301.1|3669788_3671855_-	collagen-like exosporium glycoprotein BclA3	NA	A0A285PXU9	Cedratvirus	67.3	7.1e-51
WP_009898508.1|3671921_3672998_-	glycosyltransferase family 2 protein	NA	A0A1V0SAJ8	Catovirus	25.3	1.3e-16
WP_003436212.1|3673309_3673894_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	51.3	3.6e-48
>prophage 278
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3679913	3682437	4110080		Klosneuvirus(50.0%)	2	NA	NA
WP_003436220.1|3679913_3681452_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	28.2	7.7e-50
WP_003436222.1|3681723_3682437_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.1	2.8e-31
>prophage 279
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3686180	3687176	4110080		Staphylococcus_phage(100.0%)	1	NA	NA
WP_021369133.1|3686180_3687176_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.3	2.3e-15
>prophage 280
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3694524	3696999	4110080		Clostridioides_phage(50.0%)	2	NA	NA
WP_003436248.1|3694524_3695163_+	hypothetical protein	NA	A0A1V0DZZ4	Clostridioides_phage	78.0	2.8e-14
WP_003436249.1|3695640_3696999_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	44.8	1.9e-105
>prophage 281
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3700153	3706444	4110080		Streptococcus_phage(66.67%)	4	NA	NA
WP_003436251.1|3700153_3703723_-	DNA polymerase III subunit alpha	NA	A0A0K1Y8F0	Streptomyces_phage	39.7	2.9e-217
WP_003436252.1|3703879_3704827_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	32.1	1.2e-34
WP_003416968.1|3704843_3705269_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_009891913.1|3705337_3706444_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	35.8	1.6e-44
>prophage 282
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3716477	3718274	4110080		Phaeocystis_pouchetii_virus(100.0%)	1	NA	NA
WP_003436261.1|3716477_3718274_-	mannonate oxidoreductase	NA	F2QAF8	Phaeocystis_pouchetii_virus	29.2	5.1e-13
>prophage 283
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3721492	3724318	4110080		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_003436266.1|3721492_3724318_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.6	0.0e+00
>prophage 284
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3730910	3731981	4110080		Bacillus_virus(100.0%)	1	NA	NA
WP_003436292.1|3730910_3731981_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.8	1.0e-29
>prophage 285
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3775296	3776454	4110080		Moraxella_phage(100.0%)	1	NA	NA
WP_003437815.1|3775296_3776454_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.5	8.4e-17
>prophage 286
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3781450	3783280	4110080		Lactobacillus_phage(50.0%)	3	NA	NA
WP_003421356.1|3781450_3781834_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A2K9V5D0	Lactobacillus_phage	41.9	2.6e-15
WP_003421359.1|3781802_3782090_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_003437830.1|3782122_3783280_-	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	30.5	5.6e-29
>prophage 287
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3792319	3796739	4110080		Bacillus_phage(33.33%)	6	NA	NA
WP_003421374.1|3792319_3792757_-	dCMP deaminase	NA	A7KUY9	Bacillus_phage	43.4	3.2e-25
WP_003437839.1|3792982_3793798_-	EF2563 family selenium-dependent molybdenum hydroxylase system protein	NA	NA	NA	NA	NA
WP_003437840.1|3794098_3794728_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003437841.1|3794763_3795216_-	ribose 5-phosphate isomerase B	NA	NA	NA	NA	NA
WP_003437844.1|3795232_3795682_-	low molecular weight protein arginine phosphatase	NA	A0A2H4PQT9	Staphylococcus_phage	37.6	6.2e-08
WP_009892045.1|3795698_3796739_-	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	38.4	5.9e-54
>prophage 288
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3803045	3804011	4110080		Bacillus_phage(100.0%)	1	NA	NA
WP_009892053.1|3803045_3804011_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	53.0	3.1e-81
>prophage 289
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3811316	3811595	4110080		Bacillus_phage(100.0%)	1	NA	NA
WP_003421415.1|3811316_3811595_-	HU family DNA-binding protein	NA	A0A1P8CWT5	Bacillus_phage	55.6	4.8e-19
>prophage 290
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3814971	3820047	4110080		Paenibacillus_phage(50.0%)	3	NA	NA
WP_009892063.1|3814971_3815511_-	stage V sporulation protein T	NA	A0A2I7SC16	Paenibacillus_phage	69.2	3.5e-10
WP_009892066.1|3815634_3816630_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_003425912.1|3816660_3820047_-	transcription-repair coupling factor	NA	A0A068EU29	Bacillus_phage	26.6	8.8e-06
>prophage 291
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3833327	3835752	4110080		Hokovirus(50.0%)	2	NA	NA
WP_003421448.1|3833327_3834278_-	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	37.2	8.9e-49
WP_009898727.1|3834372_3835752_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A1V0SB89	Catovirus	35.7	4.8e-27
>prophage 292
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3849823	3854450	4110080		Mycoplasma_phage(33.33%)	5	NA	NA
WP_003435855.1|3849823_3850819_-	ATP-binding cassette domain-containing protein	NA	Q6GZ03	Mycoplasma_phage	39.0	1.1e-25
WP_003435856.1|3850819_3851656_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003435857.1|3851659_3852829_-	alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase	NA	NA	NA	NA	NA
WP_021364863.1|3852829_3853543_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.6	1.6e-13
WP_003435860.1|3853583_3854450_-	ATP-binding cassette domain-containing protein	NA	A0A2R8FG22	Brazilian_cedratvirus	26.2	9.7e-10
>prophage 293
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3858577	3871035	4110080	tRNA	Bacillus_virus(40.0%)	13	NA	NA
WP_003435867.1|3858577_3860515_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	34.0	2.2e-102
WP_003421489.1|3860910_3861432_-	spore maturation protein	NA	NA	NA	NA	NA
WP_003427659.1|3861447_3862032_-	spore maturation protein A	NA	NA	NA	NA	NA
WP_003427657.1|3862163_3863594_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	54.5	9.1e-138
WP_003421494.1|3863630_3864059_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003435869.1|3864246_3864951_-	HDIG domain-containing protein	NA	NA	NA	NA	NA
WP_003435873.1|3864973_3865807_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	44.6	3.6e-54
WP_003435875.1|3865807_3866554_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_003427637.1|3866631_3867525_-	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_003435878.1|3867521_3868457_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_009892113.1|3868459_3869149_-	thymidylate kinase	NA	G3MB74	Bacillus_virus	38.1	2.0e-29
WP_003435882.1|3869279_3870689_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003427633.1|3870843_3871035_-	DUF378 domain-containing protein	NA	A0A2L2DKC6	Acanthamoeba_polyphaga_mimivirus	52.8	5.4e-06
>prophage 294
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3876869	3878399	4110080	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_003434963.1|3876869_3878399_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	40.3	2.6e-90
>prophage 295
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3883921	3885892	4110080	protease	Ostreococcus_tauri_virus(100.0%)	1	NA	NA
WP_009892124.1|3883921_3885892_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	H8ZJI5	Ostreococcus_tauri_virus	48.1	5.7e-106
>prophage 296
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3888949	3889435	4110080		Bacillus_phage(100.0%)	1	NA	NA
WP_009892129.1|3888949_3889435_-	cell wall hydrolase	NA	A0A172JHR8	Bacillus_phage	37.5	1.0e-16
>prophage 297
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3903010	3903580	4110080		Clostridium_phage(100.0%)	1	NA	NA
WP_003426023.1|3903010_3903580_-	recombinase family protein	NA	A0A0A8WIK3	Clostridium_phage	61.6	2.2e-58
>prophage 298
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3910256	3912688	4110080		Planktothrix_phage(33.33%)	3	NA	NA
WP_003426034.1|3910256_3910943_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	3.6e-31
WP_003434897.1|3911025_3912015_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	21.8	3.2e-09
WP_003434895.1|3912001_3912688_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.1	3.9e-30
>prophage 299
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3916586	3917636	4110080		Halovirus(100.0%)	1	NA	NA
WP_003429883.1|3916586_3917636_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.8	1.1e-58
>prophage 300
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3921151	3922195	4110080		Halovirus(100.0%)	1	NA	NA
WP_003435820.1|3921151_3922195_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	37.4	8.0e-51
>prophage 301
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3930725	3934298	4110080	tRNA	Bacillus_phage(66.67%)	4	NA	NA
WP_022618638.1|3930725_3931907_-	GHKL domain-containing protein	NA	W8CYF6	Bacillus_phage	29.5	5.0e-25
WP_003435805.1|3931896_3932589_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	37.3	1.5e-40
WP_003435804.1|3932722_3933439_-	M15 family metallopeptidase	NA	NA	NA	NA	NA
WP_003435803.1|3933563_3934298_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	35.4	2.4e-33
>prophage 302
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3939859	3940588	4110080		Planktothrix_phage(100.0%)	1	NA	NA
WP_003429190.1|3939859_3940588_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	28.1	6.9e-17
>prophage 303
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3952817	3953435	4110080		Planktothrix_phage(100.0%)	1	NA	NA
WP_003435768.1|3952817_3953435_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.5	3.9e-21
>prophage 304
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3960576	3961176	4110080		Acinetobacter_phage(100.0%)	1	NA	NA
WP_003429210.1|3960576_3961176_-	SIS domain-containing protein	NA	E5EYK6	Acinetobacter_phage	27.6	2.1e-11
>prophage 305
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	3990522	3999334	4110080		Paenibacillus_phage(20.0%)	7	NA	NA
WP_003435698.1|3990522_3991320_-	MBL fold metallo-hydrolase	NA	A0A0C5AFC1	Paenibacillus_phage	37.9	7.8e-38
WP_022621800.1|3991421_3992885_-	M1 family metallopeptidase	NA	NA	NA	NA	NA
WP_003429260.1|3993009_3994068_+	DnaD domain protein	NA	Q24LE6	Clostridium_phage	48.6	2.6e-09
WP_003435695.1|3994076_3995069_+	ATP-binding protein	NA	A0A2K9V3L7	Faecalibacterium_phage	32.0	1.6e-11
WP_003434259.1|3996121_3997411_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	36.5	3.6e-77
WP_003429265.1|3997492_3997801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003420541.1|3998005_3999334_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	47.6	3.7e-109
>prophage 306
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	4003480	4003915	4110080		Clostridium_phage(100.0%)	1	NA	NA
WP_003420524.1|4003480_4003915_-	single-stranded DNA-binding protein	NA	A0A0A8WIG9	Clostridium_phage	75.0	3.4e-56
>prophage 307
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	4011285	4012979	4110080		Natrialba_phage(50.0%)	2	NA	NA
WP_003420496.1|4011285_4012059_-	ParA family protein	NA	Q8JL10	Natrialba_phage	30.2	2.8e-24
WP_003429292.1|4012193_4012979_-	nucleoid occlusion protein	NA	S5VSZ7	Leptospira_phage	33.8	4.8e-16
>prophage 308
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	4018671	4030802	4110080		Bacillus_virus(33.33%)	14	NA	NA
WP_003434233.1|4018671_4018923_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	68.1	4.2e-14
WP_003429302.1|4018954_4019299_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003420485.1|4019376_4019514_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_162835941.1|4020169_4021492_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003420481.1|4021733_4022840_+	DNA polymerase III subunit beta	NA	D0R7I4	Paenibacillus_phage	30.4	4.7e-09
WP_003420479.1|4022976_4023183_+	S4 domain-containing protein YaaA	NA	NA	NA	NA	NA
WP_003429303.1|4023200_4024316_+	DNA replication/repair protein RecF	NA	D7RWF8	Brochothrix_phage	29.1	1.1e-05
WP_003434229.1|4024316_4026218_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	48.8	2.6e-156
WP_003429305.1|4026237_4028664_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	34.3	4.7e-110
WP_003420471.1|4028732_4029029_+	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_003420469.1|4029028_4029289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429306.1|4029300_4029618_+	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_003429308.1|4029642_4030029_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003420464.1|4030028_4030802_+	SigB/SigF/SigG family RNA polymerase sigma factor	NA	A0A0A0RV91	Bacillus_phage	30.8	2.9e-21
>prophage 309
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	4043308	4047464	4110080	tRNA	uncultured_Mediterranean_phage(50.0%)	3	NA	NA
WP_003435562.1|4043308_4044580_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.0	5.0e-87
WP_003421624.1|4044900_4045356_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_003421622.1|4045826_4047464_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	37.7	8.4e-55
>prophage 310
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	4068247	4072248	4110080	protease	Escherichia_phage(50.0%)	2	NA	NA
WP_003425582.1|4068247_4070695_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A1C3S747	Escherichia_phage	40.8	9.8e-132
WP_004453976.1|4070874_4072248_+	DNA repair protein RadA	NA	A0A1V0SI16	Klosneuvirus	33.9	1.4e-05
>prophage 311
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	4086996	4088727	4110080		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_004453961.1|4086996_4088727_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.2	3.4e-38
>prophage 312
NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4110080	4100484	4107033	4110080	tRNA	Tupanvirus(33.33%)	6	NA	NA
WP_009895182.1|4100484_4101930_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	41.0	1.4e-109
WP_003435581.1|4102368_4103850_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003421202.1|4104070_4104226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009895184.1|4104373_4105771_+|tRNA	cysteine--tRNA ligase	tRNA	A0A161HRB7	Powai_lake_megavirus	28.4	5.2e-53
WP_003435577.1|4105755_4106169_+	RNase3 domain protein	NA	NA	NA	NA	NA
WP_003421197.1|4106274_4107033_+	FAD-dependent thymidylate synthase	NA	K9MCR9	Sulfolobus_virus	46.1	3.4e-43
