assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	1	56714-56792	1	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_4|NZ_CP025045.1_73637_74315_+	NA|278aa|up_9|NZ_CP025045.1_33736_34570_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|NZ_CP025045.1_34557_35424_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|NZ_CP025045.1_35417_36221_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|NZ_CP025045.1_36252_36984_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|NZ_CP025045.1_37103_37535_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|NZ_CP025045.1_37563_37956_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|NZ_CP025045.1_38414_39167_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|NZ_CP025045.1_51763_52948_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|NZ_CP025045.1_53320_55672_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|NZ_CP025045.1_55693_56233_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|NZ_CP025045.1_69323_70163_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|NZ_CP025045.1_70159_71341_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|NZ_CP025045.1_71644_72547_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|NZ_CP025045.1_72568_73648_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|NZ_CP025045.1_73637_74315_+	NA	NA|72aa|down_5|NZ_CP025045.1_74357_74573_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|NZ_CP025045.1_74601_75681_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|NZ_CP025045.1_75680_76433_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|NZ_CP025045.1_76433_76991_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|NZ_CP025045.1_77160_78507_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	2	537648-537740	2	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	ATAAAAAGATATATTTATTAAATTTG	26	0	0	NA	NA	NA	1	1	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|254aa|down_0|NZ_CP025045.1_537885_538647_+	NA|279aa|up_9|NZ_CP025045.1_524936_525773_+	PRK01060, PRK01060, endonuclease IV; Provisional	NA|332aa|up_8|NZ_CP025045.1_526056_527052_+	cd19100, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein	NA|135aa|up_7|NZ_CP025045.1_527308_527713_-	pfam05866, RusA, Endodeoxyribonuclease RusA	NA|305aa|up_6|NZ_CP025045.1_528809_529724_+	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|746aa|up_5|NZ_CP025045.1_529829_532067_+	pfam13654, AAA_32, AAA domain	NA|351aa|up_4|NZ_CP025045.1_532263_533316_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|157aa|up_3|NZ_CP025045.1_533509_533980_+	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|283aa|up_2|NZ_CP025045.1_534015_534864_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|335aa|up_1|NZ_CP025045.1_535287_536292_+	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea	NA|371aa|up_0|NZ_CP025045.1_536417_537530_+	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea	NA|254aa|down_0|NZ_CP025045.1_537885_538647_+	NA	NA|273aa|down_1|NZ_CP025045.1_538649_539468_+	pfam08812, YtxC, YtxC-like family	NA|201aa|down_2|NZ_CP025045.1_539647_540250_+	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|640aa|down_3|NZ_CP025045.1_541111_543031_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|364aa|down_4|NZ_CP025045.1_543798_544890_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|447aa|down_5|NZ_CP025045.1_545555_546896_+	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing	NA|190aa|down_6|NZ_CP025045.1_547517_548087_-	COG2316, COG2316, Predicted hydrolase (HD superfamily) [General function prediction only]	NA|417aa|down_7|NZ_CP025045.1_548247_549498_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|193aa|down_8|NZ_CP025045.1_549788_550367_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|487aa|down_9|NZ_CP025045.1_550721_552182_+	cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	3	1217575-1217933	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	4,5,5	5	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|51aa|up_0|NZ_CP025045.1_1216768_1216921_+,NA|52aa|down_1|NZ_CP025045.1_1219154_1219310_+,NA|84aa|down_2|NZ_CP025045.1_1219555_1219807_+,NA|128aa|down_3|NZ_CP025045.1_1221016_1221400_-,NA|115aa|down_4|NZ_CP025045.1_1221526_1221871_+,NA|72aa|down_5|NZ_CP025045.1_1222053_1222269_+,NA|106aa|down_6|NZ_CP025045.1_1223253_1223571_-,NA|65aa|down_9|NZ_CP025045.1_1225949_1226144_-	NA|442aa|up_9|NZ_CP025045.1_1205700_1207026_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|360aa|up_8|NZ_CP025045.1_1207238_1208318_+	pfam02618, YceG, YceG-like family	NA|225aa|up_7|NZ_CP025045.1_1208489_1209164_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_6|NZ_CP025045.1_1209150_1210398_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|555aa|up_5|NZ_CP025045.1_1210469_1212134_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|95aa|up_4|NZ_CP025045.1_1212230_1212515_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|506aa|up_3|NZ_CP025045.1_1212537_1214055_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|274aa|up_2|NZ_CP025045.1_1214179_1215001_-	sd00006, TPR, Tetratricopeptide repeat	NA|476aa|up_1|NZ_CP025045.1_1215191_1216619_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|51aa|up_0|NZ_CP025045.1_1216768_1216921_+	NA	NA|75aa|down_0|NZ_CP025045.1_1218219_1218444_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|52aa|down_1|NZ_CP025045.1_1219154_1219310_+	NA	NA|84aa|down_2|NZ_CP025045.1_1219555_1219807_+	NA	NA|128aa|down_3|NZ_CP025045.1_1221016_1221400_-	NA	NA|115aa|down_4|NZ_CP025045.1_1221526_1221871_+	NA	NA|72aa|down_5|NZ_CP025045.1_1222053_1222269_+	NA	NA|106aa|down_6|NZ_CP025045.1_1223253_1223571_-	NA	NA|130aa|down_7|NZ_CP025045.1_1224629_1225019_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|170aa|down_8|NZ_CP025045.1_1225338_1225848_+	pfam04892, VanZ, VanZ like family	NA|65aa|down_9|NZ_CP025045.1_1225949_1226144_-	NA
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	4	1426048-1426408	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	DinG	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type IV-A	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	4,5,4	5	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|82aa|up_1|NZ_CP025045.1_1424543_1424789_-,NA|35aa|up_0|NZ_CP025045.1_1425413_1425518_+,NA|80aa|down_4|NZ_CP025045.1_1433531_1433771_+,NA|59aa|down_5|NZ_CP025045.1_1433958_1434135_-	NA|195aa|up_9|NZ_CP025045.1_1414220_1414805_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|477aa|up_8|NZ_CP025045.1_1415004_1416435_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_7|NZ_CP025045.1_1416752_1417697_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|312aa|up_6|NZ_CP025045.1_1417968_1418904_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|198aa|up_5|NZ_CP025045.1_1419022_1419616_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|143aa|up_4|NZ_CP025045.1_1419722_1420151_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|223aa|up_3|NZ_CP025045.1_1420217_1420886_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_2|NZ_CP025045.1_1421003_1422359_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|82aa|up_1|NZ_CP025045.1_1424543_1424789_-	NA	NA|35aa|up_0|NZ_CP025045.1_1425413_1425518_+	NA	NA|578aa|down_0|NZ_CP025045.1_1426733_1428467_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|278aa|down_1|NZ_CP025045.1_1428706_1429540_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|745aa|down_2|NZ_CP025045.1_1429570_1431805_-	cd01948, EAL, EAL domain	NA|270aa|down_3|NZ_CP025045.1_1432588_1433398_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_4|NZ_CP025045.1_1433531_1433771_+	NA	NA|59aa|down_5|NZ_CP025045.1_1433958_1434135_-	NA	NA|225aa|down_6|NZ_CP025045.1_1434639_1435314_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|185aa|down_7|NZ_CP025045.1_1435533_1436088_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|122aa|down_8|NZ_CP025045.1_1436165_1436531_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|262aa|down_9|NZ_CP025045.1_1436995_1437781_+	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	5	1536667-1537226	3,5,3	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	7,8,8	8	TypeV	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|50aa|up_9|NZ_CP025045.1_1525492_1525642_+,NA|190aa|up_7|NZ_CP025045.1_1526556_1527126_+,NA|61aa|up_4|NZ_CP025045.1_1530075_1530258_-,NA|330aa|down_4|NZ_CP025045.1_1542127_1543117_+	NA|50aa|up_9|NZ_CP025045.1_1525492_1525642_+	NA	NA|300aa|up_8|NZ_CP025045.1_1525652_1526552_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|190aa|up_7|NZ_CP025045.1_1526556_1527126_+	NA	NA|216aa|up_6|NZ_CP025045.1_1527292_1527940_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|NZ_CP025045.1_1528329_1529244_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|NZ_CP025045.1_1530075_1530258_-	NA	NA|283aa|up_3|NZ_CP025045.1_1530668_1531517_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|NZ_CP025045.1_1531535_1532363_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|308aa|up_1|NZ_CP025045.1_1532337_1533261_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|NZ_CP025045.1_1533914_1536008_+	cd01948, EAL, EAL domain	NA|273aa|down_0|NZ_CP025045.1_1537884_1538703_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_1|NZ_CP025045.1_1538835_1540956_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_2|NZ_CP025045.1_1540981_1541209_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_3|NZ_CP025045.1_1541535_1541976_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|330aa|down_4|NZ_CP025045.1_1542127_1543117_+	NA	NA|403aa|down_5|NZ_CP025045.1_1543593_1544802_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_6|NZ_CP025045.1_1544862_1545744_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|315aa|down_7|NZ_CP025045.1_1546129_1547074_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_8|NZ_CP025045.1_1547296_1547842_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain	NA|383aa|down_9|NZ_CP025045.1_1547941_1549090_+	COG2006, COG2006, Uncharacterized conserved protein [Function unknown]
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	6	1712632-1713781	4,6,4	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	13,17,17	17	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|96aa|down_0|NZ_CP025045.1_1714189_1714477_+,NA|59aa|down_5|NZ_CP025045.1_1720866_1721043_-,NA|341aa|down_6|NZ_CP025045.1_1721617_1722640_+,NA|258aa|down_8|NZ_CP025045.1_1723546_1724320_+	NA|200aa|up_9|NZ_CP025045.1_1696159_1696759_-	COG4110, COG4110, Uncharacterized protein involved in stress response [General function prediction only]	NA|266aa|up_8|NZ_CP025045.1_1696861_1697659_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|329aa|up_7|NZ_CP025045.1_1697969_1698956_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_6|NZ_CP025045.1_1699439_1701170_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|172aa|up_5|NZ_CP025045.1_1701694_1702210_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|825aa|up_4|NZ_CP025045.1_1703015_1705490_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_3|NZ_CP025045.1_1705489_1706947_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_2|NZ_CP025045.1_1707369_1709727_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_1|NZ_CP025045.1_1709812_1710130_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|424aa|up_0|NZ_CP025045.1_1710713_1711985_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|96aa|down_0|NZ_CP025045.1_1714189_1714477_+	NA	NA|184aa|down_1|NZ_CP025045.1_1715015_1715567_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_2|NZ_CP025045.1_1715757_1716720_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|615aa|down_3|NZ_CP025045.1_1717013_1718858_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|195aa|down_4|NZ_CP025045.1_1719179_1719764_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|59aa|down_5|NZ_CP025045.1_1720866_1721043_-	NA	NA|341aa|down_6|NZ_CP025045.1_1721617_1722640_+	NA	NA|296aa|down_7|NZ_CP025045.1_1722653_1723541_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_8|NZ_CP025045.1_1723546_1724320_+	NA	NA|242aa|down_9|NZ_CP025045.1_1724431_1725157_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	7	2031652-2031819	5	PILER-CR	no	csa3	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type I-A	TATTTAGGTTTTATATCAACTATGTGGTATGTAAAGAG	38	0	0	NA	NA	I-A	2	2	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|133aa|up_3|NZ_CP025045.1_2028138_2028537_-,NA|59aa|up_1|NZ_CP025045.1_2030684_2030861_+,NA|55aa|down_2|NZ_CP025045.1_2033358_2033523_-,NA|17aa|down_6|NZ_CP025045.1_2035948_2035999_+	NA|119aa|up_9|NZ_CP025045.1_2019344_2019701_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|204aa|up_8|NZ_CP025045.1_2021100_2021712_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|113aa|up_7|NZ_CP025045.1_2022009_2022348_+	pfam12650, DUF3784, Domain of unknown function (DUF3784)	NA|479aa|up_6|NZ_CP025045.1_2022754_2024191_-	PRK14328, PRK14328, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|491aa|up_5|NZ_CP025045.1_2024438_2025911_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|184aa|up_4|NZ_CP025045.1_2026737_2027289_-	pfam17099, TrpP, Tryptophan transporter TrpP	NA|133aa|up_3|NZ_CP025045.1_2028138_2028537_-	NA	NA|162aa|up_2|NZ_CP025045.1_2028891_2029377_-	pfam08239, SH3_3, Bacterial SH3 domain	NA|59aa|up_1|NZ_CP025045.1_2030684_2030861_+	NA	NA|67aa|up_0|NZ_CP025045.1_2031086_2031287_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|61aa|down_0|NZ_CP025045.1_2032036_2032219_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|282aa|down_1|NZ_CP025045.1_2032289_2033135_+	pfam13026, DUF3887, Protein of unknown function (DUF3887)	NA|55aa|down_2|NZ_CP025045.1_2033358_2033523_-	NA	NA|111aa|down_3|NZ_CP025045.1_2034064_2034397_-	pfam02627, CMD, Carboxymuconolactone decarboxylase family	NA|214aa|down_4|NZ_CP025045.1_2034640_2035282_-	COG5658, COG5658, Predicted integral membrane protein [Function unknown]	csa3|98aa|down_5|NZ_CP025045.1_2035262_2035556_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|17aa|down_6|NZ_CP025045.1_2035948_2035999_+	NA	NA|251aa|down_7|NZ_CP025045.1_2036524_2037277_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|552aa|down_8|NZ_CP025045.1_2037335_2038991_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|360aa|down_9|NZ_CP025045.1_2040263_2041343_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	8	2082723-2083670	7,5,6	CRISPRCasFinder,CRT,PILER-CR	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	ATTTACATTCCATATAGTTAATATAAAAC,ATTTACATTCCATATAGTTAATATAAAAC,GTTTTATATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	14,14,13	14	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|58aa|up_1|NZ_CP025045.1_2081939_2082113_+,NA|95aa|up_0|NZ_CP025045.1_2082269_2082554_-,NA|206aa|down_7|NZ_CP025045.1_2092289_2092907_-,NA|567aa|down_8|NZ_CP025045.1_2093076_2094777_-,NA|188aa|down_9|NZ_CP025045.1_2095173_2095737_-	NA|442aa|up_9|NZ_CP025045.1_2074277_2075603_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|208aa|up_8|NZ_CP025045.1_2075599_2076223_-	pfam13189, Cytidylate_kin2, Cytidylate kinase-like family	NA|270aa|up_7|NZ_CP025045.1_2076314_2077124_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|121aa|up_6|NZ_CP025045.1_2077557_2077920_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|186aa|up_5|NZ_CP025045.1_2078269_2078827_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|233aa|up_4|NZ_CP025045.1_2079084_2079783_+	TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family	NA|156aa|up_3|NZ_CP025045.1_2080805_2081273_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|72aa|up_2|NZ_CP025045.1_2081283_2081499_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|58aa|up_1|NZ_CP025045.1_2081939_2082113_+	NA	NA|95aa|up_0|NZ_CP025045.1_2082269_2082554_-	NA	NA|291aa|down_0|NZ_CP025045.1_2084500_2085373_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|193aa|down_1|NZ_CP025045.1_2085766_2086345_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|239aa|down_2|NZ_CP025045.1_2086402_2087119_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|362aa|down_3|NZ_CP025045.1_2087309_2088395_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|220aa|down_4|NZ_CP025045.1_2088549_2089209_-	pfam03154, Atrophin-1, Atrophin-1 family	NA|431aa|down_5|NZ_CP025045.1_2089425_2090718_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|398aa|down_6|NZ_CP025045.1_2090735_2091929_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|206aa|down_7|NZ_CP025045.1_2092289_2092907_-	NA	NA|567aa|down_8|NZ_CP025045.1_2093076_2094777_-	NA	NA|188aa|down_9|NZ_CP025045.1_2095173_2095737_-	NA
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	9	2432745-2433824	8,6,7	CRISPRCasFinder,CRT,PILER-CR	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	16,16,12	16	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|138aa|up_5|NZ_CP025045.1_2428998_2429412_+,NA|67aa|up_4|NZ_CP025045.1_2429430_2429631_+,NA|106aa|up_3|NZ_CP025045.1_2430008_2430326_+,NA|155aa|up_2|NZ_CP025045.1_2430461_2430926_+,NA|54aa|up_1|NZ_CP025045.1_2431254_2431416_-,NA|51aa|up_0|NZ_CP025045.1_2432401_2432554_-,NA|51aa|down_1|NZ_CP025045.1_2435207_2435360_-,NA|108aa|down_2|NZ_CP025045.1_2435633_2435957_-,NA|85aa|down_3|NZ_CP025045.1_2435992_2436247_-,NA|57aa|down_6|NZ_CP025045.1_2440022_2440193_+	NA|687aa|up_9|NZ_CP025045.1_2424628_2426689_-	cd16923, HATPase_VanS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Enterococcus faecium VanS	NA|231aa|up_8|NZ_CP025045.1_2426884_2427577_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|125aa|up_7|NZ_CP025045.1_2428188_2428563_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|78aa|up_6|NZ_CP025045.1_2428781_2429015_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|138aa|up_5|NZ_CP025045.1_2428998_2429412_+	NA	NA|67aa|up_4|NZ_CP025045.1_2429430_2429631_+	NA	NA|106aa|up_3|NZ_CP025045.1_2430008_2430326_+	NA	NA|155aa|up_2|NZ_CP025045.1_2430461_2430926_+	NA	NA|54aa|up_1|NZ_CP025045.1_2431254_2431416_-	NA	NA|51aa|up_0|NZ_CP025045.1_2432401_2432554_-	NA	NA|308aa|down_0|NZ_CP025045.1_2434090_2435014_-	pfam09851, SHOCT, Short C-terminal domain	NA|51aa|down_1|NZ_CP025045.1_2435207_2435360_-	NA	NA|108aa|down_2|NZ_CP025045.1_2435633_2435957_-	NA	NA|85aa|down_3|NZ_CP025045.1_2435992_2436247_-	NA	NA|125aa|down_4|NZ_CP025045.1_2437965_2438340_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|163aa|down_5|NZ_CP025045.1_2439145_2439634_+	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|57aa|down_6|NZ_CP025045.1_2440022_2440193_+	NA	NA|63aa|down_7|NZ_CP025045.1_2440669_2440858_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|117aa|down_8|NZ_CP025045.1_2441019_2441370_+	pfam12676, DUF3796, Protein of unknown function (DUF3796)	NA|67aa|down_9|NZ_CP025045.1_2441371_2441572_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	10	2619599-2619756	8	PILER-CR	no	cas3,cas5,cas7,cas6	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	AGGTTTAAGATTAACTAAGTGGATTTCA	28	0	0	NA	NA	NA	2	2	Unclear	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|492aa|down_3|NZ_CP025045.1_2624178_2625654_-	NA|448aa|up_9|NZ_CP025045.1_2612055_2613399_-	pfam06898, YqfD, Putative stage IV sporulation protein YqfD	NA|79aa|up_8|NZ_CP025045.1_2613411_2613648_-	pfam07873, YabP, YabP family	NA|188aa|up_7|NZ_CP025045.1_2613860_2614424_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_6|NZ_CP025045.1_2614616_2615114_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_5|NZ_CP025045.1_2615224_2615668_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_4|NZ_CP025045.1_2615697_2615877_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_3|NZ_CP025045.1_2616039_2616390_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_2|NZ_CP025045.1_2616432_2617731_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|253aa|up_1|NZ_CP025045.1_2617732_2618491_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|NZ_CP025045.1_2618509_2619457_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|NZ_CP025045.1_2619897_2622306_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|266aa|down_1|NZ_CP025045.1_2622332_2623130_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|338aa|down_2|NZ_CP025045.1_2623145_2624159_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|492aa|down_3|NZ_CP025045.1_2624178_2625654_-	NA	cas6|246aa|down_4|NZ_CP025045.1_2625658_2626396_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|370aa|down_5|NZ_CP025045.1_2626653_2627763_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_6|NZ_CP025045.1_2627792_2628560_+	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|458aa|down_7|NZ_CP025045.1_2628747_2630121_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|312aa|down_8|NZ_CP025045.1_2630156_2631092_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|385aa|down_9|NZ_CP025045.1_2632057_2633212_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	11	2701030-2701588	9,7,9	PILER-CR,CRT,CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATATGGAATGTAAATT,AATTTACATTCCATATAGTTAATATAAAAC,ATTTACATTCCATATAGTTAATATAAAAC	30,30,29	0	0	NA	NA	I-A:I-A:I-A	8,8,8	8	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|53aa|down_0|NZ_CP025045.1_2701873_2702032_-	NA|240aa|up_9|NZ_CP025045.1_2688601_2689321_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|253aa|up_8|NZ_CP025045.1_2689367_2690126_-	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism]	NA|451aa|up_7|NZ_CP025045.1_2690256_2691609_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|517aa|up_6|NZ_CP025045.1_2691705_2693256_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|272aa|up_5|NZ_CP025045.1_2693306_2694122_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|161aa|up_4|NZ_CP025045.1_2694142_2694625_-	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|127aa|up_3|NZ_CP025045.1_2694908_2695289_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|406aa|up_2|NZ_CP025045.1_2695383_2696601_-	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|543aa|up_1|NZ_CP025045.1_2697259_2698888_+	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase	NA|332aa|up_0|NZ_CP025045.1_2699008_2700004_+	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|53aa|down_0|NZ_CP025045.1_2701873_2702032_-	NA	NA|457aa|down_1|NZ_CP025045.1_2702325_2703696_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|223aa|down_2|NZ_CP025045.1_2705511_2706180_-	pfam04892, VanZ, VanZ like family	NA|807aa|down_3|NZ_CP025045.1_2707032_2709453_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|117aa|down_4|NZ_CP025045.1_2709806_2710157_-	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|191aa|down_5|NZ_CP025045.1_2710273_2710846_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|230aa|down_6|NZ_CP025045.1_2710846_2711536_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|213aa|down_7|NZ_CP025045.1_2711811_2712450_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|668aa|down_8|NZ_CP025045.1_2712602_2714606_+	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme	NA|214aa|down_9|NZ_CP025045.1_2714779_2715421_+	COG1309, AcrR, Transcriptional regulator [Transcription]
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	12	2936290-2936615	10	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTACCATCTATTTGTTGCCATCCTGT	26	0	0	NA	NA	NA	5	5	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|107aa|down_2|NZ_CP025045.1_2939478_2939799_-,NA|664aa|down_3|NZ_CP025045.1_2939788_2941780_-,NA|458aa|down_7|NZ_CP025045.1_2952566_2953940_-	NA|218aa|up_9|NZ_CP025045.1_2921276_2921930_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|448aa|up_8|NZ_CP025045.1_2922432_2923776_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|455aa|up_7|NZ_CP025045.1_2923954_2925319_+	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases	NA|622aa|up_6|NZ_CP025045.1_2925496_2927362_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|406aa|up_5|NZ_CP025045.1_2927597_2928815_-	cd17396, MFS_YdiM_like, Inner membrane transport protein YdiM and similar proteins of the Major Facilitator Superfamily of transporters	NA|288aa|up_4|NZ_CP025045.1_2929014_2929878_-	PRK12548, PRK12548, shikimate dehydrogenase	NA|641aa|up_3|NZ_CP025045.1_2929959_2931882_-	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2	NA|283aa|up_2|NZ_CP025045.1_2931960_2932809_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|294aa|up_1|NZ_CP025045.1_2933221_2934103_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|288aa|up_0|NZ_CP025045.1_2934310_2935174_-	cd01027, TOPRIM_RNase_M5_like, TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea	NA|338aa|down_0|NZ_CP025045.1_2937374_2938388_-	PLN02240, PLN02240, UDP-glucose 4-epimerase	NA|290aa|down_1|NZ_CP025045.1_2938411_2939281_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|107aa|down_2|NZ_CP025045.1_2939478_2939799_-	NA	NA|664aa|down_3|NZ_CP025045.1_2939788_2941780_-	NA	NA|848aa|down_4|NZ_CP025045.1_2941902_2944446_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|226aa|down_5|NZ_CP025045.1_2945189_2945867_+	cd05826, Sortase_B, Sortase domain found in class B sortases	NA|313aa|down_6|NZ_CP025045.1_2951256_2952195_+	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs	NA|458aa|down_7|NZ_CP025045.1_2952566_2953940_-	NA	NA|441aa|down_8|NZ_CP025045.1_2954126_2955449_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|235aa|down_9|NZ_CP025045.1_2955441_2956146_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	13	2991072-2991379	11	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	4	4	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|222aa|down_0|NZ_CP025045.1_2992672_2993338_+	NA|205aa|up_9|NZ_CP025045.1_2979232_2979847_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_CP025045.1_2979861_2980311_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_CP025045.1_2980335_2982543_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_CP025045.1_2982616_2983129_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_CP025045.1_2983141_2985592_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_CP025045.1_2985604_2987269_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_CP025045.1_2987566_2988064_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_CP025045.1_2988092_2989472_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_CP025045.1_2989776_2989923_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_CP025045.1_2989952_2990531_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_CP025045.1_2992672_2993338_+	NA	NA|901aa|down_1|NZ_CP025045.1_2993843_2996546_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_CP025045.1_2996571_2998122_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_CP025045.1_2998444_3000157_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_CP025045.1_3000510_3000771_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_CP025045.1_3000963_3002175_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NZ_CP025045.1_3002406_3004140_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NZ_CP025045.1_3004179_3004578_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_CP025045.1_3004580_3006128_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NZ_CP025045.1_3006442_3007348_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	14	2991486-2991775	12	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	4	4	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|222aa|down_0|NZ_CP025045.1_2992672_2993338_+	NA|205aa|up_9|NZ_CP025045.1_2979232_2979847_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_CP025045.1_2979861_2980311_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_CP025045.1_2980335_2982543_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_CP025045.1_2982616_2983129_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_CP025045.1_2983141_2985592_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_CP025045.1_2985604_2987269_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_CP025045.1_2987566_2988064_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_CP025045.1_2988092_2989472_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_CP025045.1_2989776_2989923_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_CP025045.1_2989952_2990531_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_CP025045.1_2992672_2993338_+	NA	NA|901aa|down_1|NZ_CP025045.1_2993843_2996546_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_CP025045.1_2996571_2998122_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_CP025045.1_2998444_3000157_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_CP025045.1_3000510_3000771_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_CP025045.1_3000963_3002175_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NZ_CP025045.1_3002406_3004140_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NZ_CP025045.1_3004179_3004578_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_CP025045.1_3004580_3006128_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NZ_CP025045.1_3006442_3007348_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	15	2991978-2992068	13	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	1	1	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|222aa|down_0|NZ_CP025045.1_2992672_2993338_+	NA|205aa|up_9|NZ_CP025045.1_2979232_2979847_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_CP025045.1_2979861_2980311_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_CP025045.1_2980335_2982543_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_CP025045.1_2982616_2983129_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_CP025045.1_2983141_2985592_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_CP025045.1_2985604_2987269_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_CP025045.1_2987566_2988064_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_CP025045.1_2988092_2989472_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_CP025045.1_2989776_2989923_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_CP025045.1_2989952_2990531_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_CP025045.1_2992672_2993338_+	NA	NA|901aa|down_1|NZ_CP025045.1_2993843_2996546_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_CP025045.1_2996571_2998122_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_CP025045.1_2998444_3000157_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_CP025045.1_3000510_3000771_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_CP025045.1_3000963_3002175_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NZ_CP025045.1_3002406_3004140_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NZ_CP025045.1_3004179_3004578_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_CP025045.1_3004580_3006128_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NZ_CP025045.1_3006442_3007348_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	16	3204909-3205002	14	CRISPRCasFinder	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTACATACCACTTAGTTAATATAAAAC	29	0	0	NA	NA	I-A	1	1	Unclear	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|67aa|up_7|NZ_CP025045.1_3197802_3198003_+,NA|260aa|up_1|NZ_CP025045.1_3203185_3203965_+,NA	NA|740aa|up_9|NZ_CP025045.1_3192149_3194369_-	cd01948, EAL, EAL domain	NA|885aa|up_8|NZ_CP025045.1_3194644_3197299_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|NZ_CP025045.1_3197802_3198003_+	NA	NA|197aa|up_6|NZ_CP025045.1_3198209_3198800_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|NZ_CP025045.1_3198802_3199678_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|NZ_CP025045.1_3199753_3201145_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|NZ_CP025045.1_3201148_3202285_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|NZ_CP025045.1_3202316_3202862_-	pfam02632, BioY, BioY family	NA|260aa|up_1|NZ_CP025045.1_3203185_3203965_+	NA	NA|143aa|up_0|NZ_CP025045.1_3204419_3204848_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|NZ_CP025045.1_3206956_3207223_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|NZ_CP025045.1_3207225_3208206_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|184aa|down_2|NZ_CP025045.1_3208208_3208760_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|NZ_CP025045.1_3208774_3211096_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|NZ_CP025045.1_3211106_3211808_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|NZ_CP025045.1_3211809_3212724_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|626aa|down_6|NZ_CP025045.1_3212725_3214603_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|246aa|down_7|NZ_CP025045.1_3214608_3215346_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|306aa|down_8|NZ_CP025045.1_3215423_3216341_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|NZ_CP025045.1_3216619_3218536_-	pfam02687, FtsX, FtsX-like permease family
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	17	3205037-3206773	8,10,15	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAAT,ATTTACATACCACTTAGTTAATATAAAAC	29,29,29	0	0	NA	NA	I-A:I-A:I-A	26,25,25	26	Unclear	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|67aa|up_7|NZ_CP025045.1_3197802_3198003_+,NA|260aa|up_1|NZ_CP025045.1_3203185_3203965_+,NA	NA|740aa|up_9|NZ_CP025045.1_3192149_3194369_-	cd01948, EAL, EAL domain	NA|885aa|up_8|NZ_CP025045.1_3194644_3197299_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|NZ_CP025045.1_3197802_3198003_+	NA	NA|197aa|up_6|NZ_CP025045.1_3198209_3198800_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|NZ_CP025045.1_3198802_3199678_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|NZ_CP025045.1_3199753_3201145_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|NZ_CP025045.1_3201148_3202285_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|NZ_CP025045.1_3202316_3202862_-	pfam02632, BioY, BioY family	NA|260aa|up_1|NZ_CP025045.1_3203185_3203965_+	NA	NA|143aa|up_0|NZ_CP025045.1_3204419_3204848_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|NZ_CP025045.1_3206956_3207223_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|NZ_CP025045.1_3207225_3208206_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|184aa|down_2|NZ_CP025045.1_3208208_3208760_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|NZ_CP025045.1_3208774_3211096_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|NZ_CP025045.1_3211106_3211808_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|NZ_CP025045.1_3211809_3212724_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|626aa|down_6|NZ_CP025045.1_3212725_3214603_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|246aa|down_7|NZ_CP025045.1_3214608_3215346_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|306aa|down_8|NZ_CP025045.1_3215423_3216341_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|NZ_CP025045.1_3216619_3218536_-	pfam02687, FtsX, FtsX-like permease family
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	18	3552375-3553549	9	CRT	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GCTCCNNTNNNTCCTGTTGNNCC	23	2	2	3552965-3552986|3553298-3553319	NZ_CP025045.1_3670491-3670512|NZ_CP025045.1_3671391-3671412	NA	17	17	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|46aa|down_3|NZ_CP025045.1_3558363_3558501_-	NA|82aa|up_9|NZ_CP025045.1_3540477_3540723_-	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|373aa|up_8|NZ_CP025045.1_3540853_3541972_-	cd05670, M20_Acy1_YkuR-like, M20 Peptidase aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins	NA|398aa|up_7|NZ_CP025045.1_3542177_3543371_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|294aa|up_6|NZ_CP025045.1_3543693_3544575_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|334aa|up_5|NZ_CP025045.1_3544999_3546001_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|296aa|up_4|NZ_CP025045.1_3546117_3547005_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|250aa|up_3|NZ_CP025045.1_3547071_3547821_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|239aa|up_2|NZ_CP025045.1_3548080_3548797_+	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA|330aa|up_1|NZ_CP025045.1_3549248_3550238_-	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|252aa|up_0|NZ_CP025045.1_3550677_3551433_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|180aa|down_0|NZ_CP025045.1_3553992_3554532_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|436aa|down_1|NZ_CP025045.1_3554859_3556167_-	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|592aa|down_2|NZ_CP025045.1_3556591_3558367_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|46aa|down_3|NZ_CP025045.1_3558363_3558501_-	NA	NA|190aa|down_4|NZ_CP025045.1_3558578_3559148_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|212aa|down_5|NZ_CP025045.1_3559331_3559967_-	PRK05813, PRK05813, single-stranded DNA-binding protein; Provisional	NA|294aa|down_6|NZ_CP025045.1_3560634_3561516_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|336aa|down_7|NZ_CP025045.1_3561635_3562643_-	PRK13969, PRK13969, proline racemase; Provisional	NA|161aa|down_8|NZ_CP025045.1_3562662_3563145_-	TIGR04480, D-proline_reductase_PrdA_proprotein, D-proline reductase (dithiol), PrdA proprotein	NA|156aa|down_9|NZ_CP025045.1_3563162_3563630_-	TIGR04480, D-proline_reductase_PrdA_proprotein, D-proline reductase (dithiol), PrdA proprotein
GCF_002812605.1_ASM281260v1	NZ_CP025045	Clostridioides difficile strain W0023a chromosome, complete genome	19	4037949-4038033	16	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTGTGTTAGCACTTTAAGCAAC	23	1	9	4037972-4038010|4037972-4038010|4037972-4038010|4037972-4038010|4037972-4038010|4037972-4038010|4037972-4038010|4037972-4038010|4037972-4038010	NZ_CP025045.1_41188-41226|NZ_CP025045.1_48138-48176|NZ_CP025045.1_64161-64199|NZ_CP025045.1_1024323-1024361|NZ_CP025045.1_2949303-2949265|NZ_CP025045.1_3735786-3735748|NZ_CP025045.1_4032561-4032599|NZ_CP025045.1_4052203-4052241|NZ_CP025045.1_3874505-3874467	NA	1	1	Orphan	cas14k,csa3,WYL,cas3,cas14j,DEDDh,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|87aa|up_3|NZ_CP025045.1_4029028_4029289_+,NA|74aa|down_7|NZ_CP025045.1_4048625_4048847_+,NA|138aa|down_9|NZ_CP025045.1_4059479_4059893_+	NA|369aa|up_9|NZ_CP025045.1_4021733_4022840_+	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|69aa|up_8|NZ_CP025045.1_4022976_4023183_+	pfam13275, S4_2, S4 domain	NA|372aa|up_7|NZ_CP025045.1_4023200_4024316_+	PRK00064, recF, recombination protein F; Reviewed	NA|634aa|up_6|NZ_CP025045.1_4024316_4026218_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|809aa|up_5|NZ_CP025045.1_4026237_4028664_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|99aa|up_4|NZ_CP025045.1_4028732_4029029_+	pfam12732, YtxH, YtxH-like protein	NA|87aa|up_3|NZ_CP025045.1_4029028_4029289_+	NA	NA|106aa|up_2|NZ_CP025045.1_4029300_4029618_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|129aa|up_1|NZ_CP025045.1_4029642_4030029_+	PRK04069, PRK04069, serine-protein kinase RsbW; Provisional	NA|258aa|up_0|NZ_CP025045.1_4030028_4030802_+	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA|170aa|down_0|NZ_CP025045.1_4041447_4041957_+	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only]	NA|294aa|down_1|NZ_CP025045.1_4041968_4042850_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|424aa|down_2|NZ_CP025045.1_4043308_4044580_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|152aa|down_3|NZ_CP025045.1_4044900_4045356_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|546aa|down_4|NZ_CP025045.1_4045826_4047464_+	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|117aa|down_5|NZ_CP025045.1_4047522_4047873_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|200aa|down_6|NZ_CP025045.1_4047885_4048485_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|74aa|down_7|NZ_CP025045.1_4048625_4048847_+	NA	NA|402aa|down_8|NZ_CP025045.1_4048917_4050123_-	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins	NA|138aa|down_9|NZ_CP025045.1_4059479_4059893_+	NA
