assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002838245.1_ASM283824v1	NZ_CP021384	Bifidobacterium breve strain NRBB01 chromosome, complete genome	1	1342445-1342517	1	CRISPRCasFinder	no		DEDDh,cas3,WYL,c2c9_V-U4	Orphan	CAGCCCTGCGAGATTTGCAGTGCTGGG	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,c2c9_V-U4	NA|78aa|up_7|NZ_CP021384.1_1332168_1332402_-,NA|91aa|up_3|NZ_CP021384.1_1340080_1340353_-,NA|166aa|up_1|NZ_CP021384.1_1341136_1341634_-,NA|85aa|up_0|NZ_CP021384.1_1341630_1341885_-,NA|64aa|down_0|NZ_CP021384.1_1343159_1343351_-,NA|235aa|down_1|NZ_CP021384.1_1343516_1344221_+,NA|123aa|down_2|NZ_CP021384.1_1344232_1344601_-	NA|117aa|up_9|NZ_CP021384.1_1330926_1331277_-	pfam12666, PrgI, PrgI family protein	NA|282aa|up_8|NZ_CP021384.1_1331308_1332154_-	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein	NA|78aa|up_7|NZ_CP021384.1_1332168_1332402_-	NA	NA|1790aa|up_6|NZ_CP021384.1_1332765_1338135_-	pfam16364, Antigen_C, Cell surface antigen C-terminus	NA|330aa|up_5|NZ_CP021384.1_1338486_1339476_-	pfam07554, FIVAR, FIVAR domain	NA|158aa|up_4|NZ_CP021384.1_1339579_1340053_-	pfam02467, Whib, Transcription factor WhiB	NA|91aa|up_3|NZ_CP021384.1_1340080_1340353_-	NA	NA|222aa|up_2|NZ_CP021384.1_1340358_1341024_-	cd02042, ParAB_family, partition proteins ParAB family	NA|166aa|up_1|NZ_CP021384.1_1341136_1341634_-	NA	NA|85aa|up_0|NZ_CP021384.1_1341630_1341885_-	NA	NA|64aa|down_0|NZ_CP021384.1_1343159_1343351_-	NA	NA|235aa|down_1|NZ_CP021384.1_1343516_1344221_+	NA	NA|123aa|down_2|NZ_CP021384.1_1344232_1344601_-	NA	NA|89aa|down_3|NZ_CP021384.1_1344600_1344867_-	pfam08667, BetR, BetR domain	NA|178aa|down_4|NZ_CP021384.1_1345478_1346012_+	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|775aa|down_5|NZ_CP021384.1_1346112_1348437_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|159aa|down_6|NZ_CP021384.1_1348530_1349007_-	PRK00601, dut, dUTP diphosphatase	NA|98aa|down_7|NZ_CP021384.1_1349006_1349300_-	pfam13834, DUF4193, Domain of unknown function (DUF4193)	NA|358aa|down_8|NZ_CP021384.1_1349451_1350525_+	pfam11268, DUF3071, Protein of unknown function (DUF3071)	NA|421aa|down_9|NZ_CP021384.1_1350630_1351893_-	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase
GCF_002838245.1_ASM283824v1	NZ_CP021384	Bifidobacterium breve strain NRBB01 chromosome, complete genome	2	2008975-2009121	2	CRISPRCasFinder	no		DEDDh,cas3,WYL,c2c9_V-U4	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	1	1	2009000-2009035	NZ_CP021384.1_2010337-2010372	NA	2	2	Orphan	DEDDh,cas3,WYL,c2c9_V-U4	NA|702aa|up_3|NZ_CP021384.1_2004165_2006271_+,NA|318aa|down_0|NZ_CP021384.1_2009235_2010189_+	NA|75aa|up_9|NZ_CP021384.1_1987357_1987582_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|3161aa|up_8|NZ_CP021384.1_1988916_1998399_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_7|NZ_CP021384.1_1998438_2000061_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|623aa|up_6|NZ_CP021384.1_2000053_2001922_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|200aa|up_5|NZ_CP021384.1_2002433_2003033_+	pfam02632, BioY, BioY family	NA|320aa|up_4|NZ_CP021384.1_2003034_2003994_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|702aa|up_3|NZ_CP021384.1_2004165_2006271_+	NA	NA|286aa|up_2|NZ_CP021384.1_2006349_2007207_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_CP021384.1_2007479_2008172_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_CP021384.1_2008187_2008619_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_CP021384.1_2009235_2010189_+	NA	NA|276aa|down_1|NZ_CP021384.1_2010544_2011372_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_CP021384.1_2011404_2011632_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_CP021384.1_2011961_2013167_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_4|NZ_CP021384.1_2013308_2014571_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_CP021384.1_2014666_2015800_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_CP021384.1_2015905_2017597_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_CP021384.1_2017663_2017915_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP021384.1_2017937_2018246_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1024aa|down_9|NZ_CP021384.1_2018432_2021504_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
GCF_002838245.1_ASM283824v1	NZ_CP021384	Bifidobacterium breve strain NRBB01 chromosome, complete genome	3	2130532-2130616	3	CRISPRCasFinder	no		DEDDh,cas3,WYL,c2c9_V-U4	Orphan	CCTTCCCGAATATGTACCACTGAC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,c2c9_V-U4	NA|239aa|up_9|NZ_CP021384.1_2116013_2116730_-,NA|57aa|down_2|NZ_CP021384.1_2135069_2135240_+,NA|47aa|down_4|NZ_CP021384.1_2136813_2136954_-,NA|98aa|down_6|NZ_CP021384.1_2139052_2139346_-,NA|224aa|down_8|NZ_CP021384.1_2141958_2142630_+,NA|90aa|down_9|NZ_CP021384.1_2142698_2142968_+	NA|239aa|up_9|NZ_CP021384.1_2116013_2116730_-	NA	NA|320aa|up_8|NZ_CP021384.1_2116935_2117895_-	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|598aa|up_7|NZ_CP021384.1_2117991_2119785_-	cd06414, GH25_LytC-like, The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains	NA|502aa|up_6|NZ_CP021384.1_2120060_2121566_-	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain	NA|487aa|up_5|NZ_CP021384.1_2121870_2123331_+	pfam02687, FtsX, FtsX-like permease family	NA|247aa|up_4|NZ_CP021384.1_2123771_2124512_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|255aa|up_3|NZ_CP021384.1_2124872_2125637_+	TIGR00295, Uncharacterized_protein_MJ0778, TIGR00295 family protein	NA|287aa|up_2|NZ_CP021384.1_2125766_2126627_-	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|804aa|up_1|NZ_CP021384.1_2126910_2129322_-	pfam02705, K_trans, K+ potassium transporter	NA|320aa|up_0|NZ_CP021384.1_2129520_2130480_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|602aa|down_0|NZ_CP021384.1_2130733_2132539_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|621aa|down_1|NZ_CP021384.1_2132738_2134601_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|57aa|down_2|NZ_CP021384.1_2135069_2135240_+	NA	NA|439aa|down_3|NZ_CP021384.1_2135356_2136673_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|47aa|down_4|NZ_CP021384.1_2136813_2136954_-	NA	NA|83aa|down_5|NZ_CP021384.1_2137025_2137274_-	cd09004, GH43_bXyl-like, Glycosyl hydrolase family 43 protein such as Bacteroides thetaiotaomicron VPI-5482 alpha-L-arabinofuranosidases (BT3675;BT_3675) and (BT3662;BT_3662); includes mostly xylanases	NA|98aa|down_6|NZ_CP021384.1_2139052_2139346_-	NA	NA|622aa|down_7|NZ_CP021384.1_2139855_2141721_-	PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed	NA|224aa|down_8|NZ_CP021384.1_2141958_2142630_+	NA	NA|90aa|down_9|NZ_CP021384.1_2142698_2142968_+	NA
GCF_002838245.1_ASM283824v1	NZ_CP021384	Bifidobacterium breve strain NRBB01 chromosome, complete genome	4	2159236-2159312	4	CRISPRCasFinder	no		DEDDh,cas3,WYL,c2c9_V-U4	Orphan	GCAAATCCCCCAACCAATCGAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,c2c9_V-U4	NA,NA	NA|350aa|up_9|NZ_CP021384.1_2143087_2144137_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|473aa|up_8|NZ_CP021384.1_2144767_2146186_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|314aa|up_7|NZ_CP021384.1_2146290_2147232_+	pfam02424, ApbE, ApbE family	NA|610aa|up_6|NZ_CP021384.1_2147240_2149070_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|623aa|up_5|NZ_CP021384.1_2149201_2151070_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|174aa|up_4|NZ_CP021384.1_2151253_2151775_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|76aa|up_3|NZ_CP021384.1_2152350_2152578_+	pfam07920, DUF1684, Protein of unknown function (DUF1684)	NA|508aa|up_2|NZ_CP021384.1_2152714_2154238_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1253aa|up_1|NZ_CP021384.1_2154491_2158250_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_CP021384.1_2158259_2158961_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_CP021384.1_2159442_2160915_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_CP021384.1_2160966_2161572_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_CP021384.1_2161722_2162565_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_CP021384.1_2162564_2163419_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_CP021384.1_2163789_2164806_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|443aa|down_5|NZ_CP021384.1_2165013_2166342_-	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|233aa|down_6|NZ_CP021384.1_2166762_2167461_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_7|NZ_CP021384.1_2167547_2167925_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|256aa|down_8|NZ_CP021384.1_2168020_2168788_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|916aa|down_9|NZ_CP021384.1_2168953_2171701_+	COG1511, COG1511, Predicted membrane protein [Function unknown]
