assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002838365.1_ASM283836v1	NZ_CP021391	Bifidobacterium breve strain NRBB50 chromosome, complete genome	1	152207-152543	1	CRISPRCasFinder	no		RT,DEDDh,cas3,c2c9_V-U4,WYL	Orphan	TACTGGTGGTTTTGCCCCGCTGAGG	25	0	0	NA	NA	NA	6	6	Orphan	RT,DEDDh,cas3,c2c9_V-U4,WYL	NA,NA	NA|312aa|up_9|NZ_CP021391.1_138933_139869_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|356aa|up_8|NZ_CP021391.1_139931_140999_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|429aa|up_7|NZ_CP021391.1_141166_142453_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|528aa|up_6|NZ_CP021391.1_142476_144060_+	cd01031, EriC, ClC chloride channel EriC	NA|355aa|up_5|NZ_CP021391.1_144247_145312_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|363aa|up_4|NZ_CP021391.1_144618_145707_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|362aa|up_3|NZ_CP021391.1_145980_147066_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|509aa|up_2|NZ_CP021391.1_147492_149019_+	PRK13840, PRK13840, sucrose phosphorylase; Provisional	NA|545aa|up_1|NZ_CP021391.1_149223_150858_+	cd06174, MFS, Major Facilitator Superfamily	NA|351aa|up_0|NZ_CP021391.1_150927_151980_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|456aa|down_0|NZ_CP021391.1_152965_154333_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|351aa|down_1|NZ_CP021391.1_154727_155780_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|351aa|down_2|NZ_CP021391.1_156207_157260_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|605aa|down_3|NZ_CP021391.1_157445_159260_-	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|344aa|down_4|NZ_CP021391.1_159531_160563_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|1471aa|down_5|NZ_CP021391.1_161471_165884_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|612aa|down_6|NZ_CP021391.1_165988_167824_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|320aa|down_7|NZ_CP021391.1_168080_169040_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|739aa|down_8|NZ_CP021391.1_169343_171560_-	PRK14507, PRK14507, malto-oligosyltrehalose synthase	NA|629aa|down_9|NZ_CP021391.1_171816_173703_-	cd11348, AmyAc_2, Alpha amylase catalytic domain found in an uncharacterized protein family
GCF_002838365.1_ASM283836v1	NZ_CP021391	Bifidobacterium breve strain NRBB50 chromosome, complete genome	2	738187-738260	2	CRISPRCasFinder	no		RT,DEDDh,cas3,c2c9_V-U4,WYL	Orphan	TGGGGACTGCTCAATCTACCGAC	23	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,c2c9_V-U4,WYL	NA,NA|77aa|down_5|NZ_CP021391.1_745380_745611_-	NA|914aa|up_9|NZ_CP021391.1_724500_727242_+	pfam02057, Glyco_hydro_59, Glycosyl hydrolase family 59	NA|528aa|up_8|NZ_CP021391.1_727275_728859_+	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	NA|481aa|up_7|NZ_CP021391.1_728923_730366_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|174aa|up_6|NZ_CP021391.1_730418_730940_-	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism]	NA|416aa|up_5|NZ_CP021391.1_731013_732261_-	PRK15072, PRK15072, D-galactonate dehydratase family protein	NA|465aa|up_4|NZ_CP021391.1_732359_733754_-	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]	NA|476aa|up_3|NZ_CP021391.1_733789_735217_-	PRK02925, PRK02925, glucuronate isomerase; Reviewed	NA|131aa|up_2|NZ_CP021391.1_735247_735640_-	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|338aa|up_1|NZ_CP021391.1_735869_736883_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|334aa|up_0|NZ_CP021391.1_737027_738029_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|476aa|down_0|NZ_CP021391.1_738323_739751_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|453aa|down_1|NZ_CP021391.1_739942_741301_+	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|429aa|down_2|NZ_CP021391.1_741340_742627_+	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|701aa|down_3|NZ_CP021391.1_742810_744913_+	PRK05667, dnaG, DNA primase; Validated	NA|141aa|down_4|NZ_CP021391.1_744961_745384_-	pfam13470, PIN_3, PIN domain	NA|77aa|down_5|NZ_CP021391.1_745380_745611_-	NA	NA|292aa|down_6|NZ_CP021391.1_745821_746697_+	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA|213aa|down_7|NZ_CP021391.1_746886_747525_+	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA|508aa|down_8|NZ_CP021391.1_747582_749106_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|393aa|down_9|NZ_CP021391.1_749186_750365_+	cd01117, YbiR_permease, Putative anion permease YbiR
GCF_002838365.1_ASM283836v1	NZ_CP021391	Bifidobacterium breve strain NRBB50 chromosome, complete genome	3	1789076-1789851	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no		RT,DEDDh,cas3,c2c9_V-U4,WYL	Orphan	ATTTCAATCCACGCTCCCCGGATGGGGAGCGACA,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	34,33,33	0	0	NA	NA	I-C:I-C:I-C	11,11,10	11	Orphan	RT,DEDDh,cas3,c2c9_V-U4,WYL	NA,NA|122aa|down_8|NZ_CP021391.1_1800759_1801125_-,NA|46aa|down_9|NZ_CP021391.1_1801137_1801275_+	NA|161aa|up_9|NZ_CP021391.1_1775920_1776403_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|525aa|up_8|NZ_CP021391.1_1776462_1778037_-	TIGR03689, pup_AAA, proteasome ATPase	NA|232aa|up_7|NZ_CP021391.1_1778090_1778786_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|251aa|up_6|NZ_CP021391.1_1778806_1779559_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_5|NZ_CP021391.1_1779606_1781916_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_4|NZ_CP021391.1_1782065_1782770_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_3|NZ_CP021391.1_1782909_1783923_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_2|NZ_CP021391.1_1784219_1786082_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_1|NZ_CP021391.1_1786249_1786534_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_0|NZ_CP021391.1_1786819_1788040_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|1103aa|down_0|NZ_CP021391.1_1789981_1793290_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|322aa|down_1|NZ_CP021391.1_1793962_1794928_-	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|132aa|down_2|NZ_CP021391.1_1795003_1795399_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|316aa|down_3|NZ_CP021391.1_1795530_1796478_-	cd06323, PBP1_ribose_binding, periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs	NA|330aa|down_4|NZ_CP021391.1_1796554_1797544_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|507aa|down_5|NZ_CP021391.1_1797558_1799079_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|340aa|down_6|NZ_CP021391.1_1799338_1800358_-	cd06299, PBP1_LacI-like, ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum produces significant amounts of L-glutamate directly from cheap sugar and ammonia	NA|112aa|down_7|NZ_CP021391.1_1800502_1800838_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|122aa|down_8|NZ_CP021391.1_1800759_1801125_-	NA	NA|46aa|down_9|NZ_CP021391.1_1801137_1801275_+	NA
GCF_002838365.1_ASM283836v1	NZ_CP021391	Bifidobacterium breve strain NRBB50 chromosome, complete genome	4	2129238-2129384	4	CRISPRCasFinder	no		RT,DEDDh,cas3,c2c9_V-U4,WYL	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	1	1	2129263-2129298	NZ_CP021391.1_2130600-2130635	NA	2	2	Orphan	RT,DEDDh,cas3,c2c9_V-U4,WYL	NA|700aa|up_3|NZ_CP021391.1_2124433_2126533_+,NA|318aa|down_0|NZ_CP021391.1_2129498_2130452_+	NA|144aa|up_9|NZ_CP021391.1_2107925_2108357_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|3161aa|up_8|NZ_CP021391.1_2109171_2118654_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_7|NZ_CP021391.1_2118693_2120316_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|627aa|up_6|NZ_CP021391.1_2120308_2122189_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|200aa|up_5|NZ_CP021391.1_2122701_2123301_+	pfam02632, BioY, BioY family	NA|320aa|up_4|NZ_CP021391.1_2123302_2124262_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|700aa|up_3|NZ_CP021391.1_2124433_2126533_+	NA	NA|286aa|up_2|NZ_CP021391.1_2126611_2127469_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_CP021391.1_2127742_2128435_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_CP021391.1_2128450_2128882_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_CP021391.1_2129498_2130452_+	NA	NA|276aa|down_1|NZ_CP021391.1_2130807_2131635_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_CP021391.1_2131667_2131895_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_CP021391.1_2132224_2133430_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_4|NZ_CP021391.1_2133571_2134834_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_CP021391.1_2134929_2136063_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_CP021391.1_2136169_2137861_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_CP021391.1_2137927_2138179_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP021391.1_2138201_2138510_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1021aa|down_9|NZ_CP021391.1_2138696_2141759_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
GCF_002838365.1_ASM283836v1	NZ_CP021391	Bifidobacterium breve strain NRBB50 chromosome, complete genome	5	2292407-2292483	5	CRISPRCasFinder	no		RT,DEDDh,cas3,c2c9_V-U4,WYL	Orphan	GCAAATCCCCCAACCAATCGAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,c2c9_V-U4,WYL	NA|71aa|up_5|NZ_CP021391.1_2284848_2285061_+,NA	NA|166aa|up_9|NZ_CP021391.1_2281027_2281525_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|494aa|up_8|NZ_CP021391.1_2281705_2283187_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|262aa|up_7|NZ_CP021391.1_2283189_2283975_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|96aa|up_6|NZ_CP021391.1_2283964_2284252_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|71aa|up_5|NZ_CP021391.1_2284848_2285061_+	NA	NA|70aa|up_4|NZ_CP021391.1_2285017_2285227_-	pfam13586, DDE_Tnp_1_2, Transposase DDE domain	NA|145aa|up_3|NZ_CP021391.1_2285377_2285812_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|508aa|up_2|NZ_CP021391.1_2285884_2287408_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1253aa|up_1|NZ_CP021391.1_2287662_2291421_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_CP021391.1_2291430_2292132_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_CP021391.1_2292613_2294086_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_CP021391.1_2294137_2294743_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_CP021391.1_2294893_2295736_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_CP021391.1_2295735_2296590_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_CP021391.1_2296960_2297977_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|443aa|down_5|NZ_CP021391.1_2298182_2299511_-	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|233aa|down_6|NZ_CP021391.1_2299931_2300630_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_7|NZ_CP021391.1_2300716_2301094_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|256aa|down_8|NZ_CP021391.1_2301189_2301957_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|916aa|down_9|NZ_CP021391.1_2302124_2304872_+	COG1511, COG1511, Predicted membrane protein [Function unknown]
