assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002838425.1_ASM283842v1	NZ_CP021394	Bifidobacterium breve strain NRBB56 chromosome, complete genome	1	1453236-1453308	1	CRISPRCasFinder	no		c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CAGCACTGCGAGATTTGCAGTGCTGGG	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|78aa|up_8|NZ_CP021394.1_1434396_1434630_-,NA|91aa|up_3|NZ_CP021394.1_1450870_1451143_-,NA|166aa|up_1|NZ_CP021394.1_1451926_1452424_-,NA|85aa|up_0|NZ_CP021394.1_1452420_1452675_-,NA|64aa|down_0|NZ_CP021394.1_1453950_1454142_-,NA|235aa|down_1|NZ_CP021394.1_1454307_1455012_+,NA|123aa|down_2|NZ_CP021394.1_1455023_1455392_-	NA|282aa|up_9|NZ_CP021394.1_1433536_1434382_-	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein	NA|78aa|up_8|NZ_CP021394.1_1434396_1434630_-	NA	NA|2568aa|up_7|NZ_CP021394.1_1435554_1443258_-	pfam12892, FctA, Spy0128-like isopeptide containing domain	NA|1790aa|up_6|NZ_CP021394.1_1443585_1448955_-	pfam16364, Antigen_C, Cell surface antigen C-terminus	NA|325aa|up_5|NZ_CP021394.1_1449291_1450266_-	pfam07554, FIVAR, FIVAR domain	NA|158aa|up_4|NZ_CP021394.1_1450369_1450843_-	pfam02467, Whib, Transcription factor WhiB	NA|91aa|up_3|NZ_CP021394.1_1450870_1451143_-	NA	NA|222aa|up_2|NZ_CP021394.1_1451148_1451814_-	cd02042, ParAB_family, partition proteins ParAB family	NA|166aa|up_1|NZ_CP021394.1_1451926_1452424_-	NA	NA|85aa|up_0|NZ_CP021394.1_1452420_1452675_-	NA	NA|64aa|down_0|NZ_CP021394.1_1453950_1454142_-	NA	NA|235aa|down_1|NZ_CP021394.1_1454307_1455012_+	NA	NA|123aa|down_2|NZ_CP021394.1_1455023_1455392_-	NA	NA|89aa|down_3|NZ_CP021394.1_1455391_1455658_-	pfam08667, BetR, BetR domain	NA|180aa|down_4|NZ_CP021394.1_1456269_1456809_+	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|775aa|down_5|NZ_CP021394.1_1456909_1459234_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|159aa|down_6|NZ_CP021394.1_1459327_1459804_-	PRK00601, dut, dUTP diphosphatase	NA|98aa|down_7|NZ_CP021394.1_1459803_1460097_-	pfam13834, DUF4193, Domain of unknown function (DUF4193)	NA|358aa|down_8|NZ_CP021394.1_1460248_1461322_+	pfam11268, DUF3071, Protein of unknown function (DUF3071)	NA|421aa|down_9|NZ_CP021394.1_1461427_1462690_-	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase
GCF_002838425.1_ASM283842v1	NZ_CP021394	Bifidobacterium breve strain NRBB56 chromosome, complete genome	2	1749671-1750113	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	 Type I-U?,Type I-C,Type I-U	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,33,33	0	0	NA	NA	I-C:I-C:I-C	6,6,5	6	TypeI-U?,TypeI-C,TypeI-U	c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_4|NZ_CP021394.1_1759333_1759567_-	NA|187aa|up_9|NZ_CP021394.1_1736438_1736999_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|525aa|up_8|NZ_CP021394.1_1737058_1738633_-	TIGR03689, pup_AAA, proteasome ATPase	NA|232aa|up_7|NZ_CP021394.1_1738686_1739382_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|251aa|up_6|NZ_CP021394.1_1739402_1740155_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_5|NZ_CP021394.1_1740202_1742512_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_4|NZ_CP021394.1_1742661_1743366_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_3|NZ_CP021394.1_1743505_1744519_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_2|NZ_CP021394.1_1744814_1746677_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_1|NZ_CP021394.1_1746844_1747129_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_0|NZ_CP021394.1_1747414_1748635_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|123aa|down_0|NZ_CP021394.1_1750209_1750578_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|260aa|down_1|NZ_CP021394.1_1750691_1751471_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|500aa|down_2|NZ_CP021394.1_1751467_1752967_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|486aa|down_3|NZ_CP021394.1_1753536_1754994_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|78aa|down_4|NZ_CP021394.1_1759333_1759567_-	NA	cas2|97aa|down_5|NZ_CP021394.1_1760026_1760317_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_6|NZ_CP021394.1_1760373_1761405_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_7|NZ_CP021394.1_1761406_1762096_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_8|NZ_CP021394.1_1762134_1762986_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_9|NZ_CP021394.1_1762989_1764948_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)
GCF_002838425.1_ASM283842v1	NZ_CP021394	Bifidobacterium breve strain NRBB56 chromosome, complete genome	3	1755169-1758508	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	 Type I-U?,Type I-C,Type I-U	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,33,33	0	0	NA	NA	I-C:I-C:I-C	49,49,49	49	TypeI-U?,TypeI-C,TypeI-U	c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_0|NZ_CP021394.1_1759333_1759567_-	NA|770aa|up_9|NZ_CP021394.1_1740202_1742512_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_8|NZ_CP021394.1_1742661_1743366_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_7|NZ_CP021394.1_1743505_1744519_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_6|NZ_CP021394.1_1744814_1746677_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_5|NZ_CP021394.1_1746844_1747129_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_4|NZ_CP021394.1_1747414_1748635_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|123aa|up_3|NZ_CP021394.1_1750209_1750578_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|260aa|up_2|NZ_CP021394.1_1750691_1751471_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|500aa|up_1|NZ_CP021394.1_1751467_1752967_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|486aa|up_0|NZ_CP021394.1_1753536_1754994_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|78aa|down_0|NZ_CP021394.1_1759333_1759567_-	NA	cas2|97aa|down_1|NZ_CP021394.1_1760026_1760317_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_2|NZ_CP021394.1_1760373_1761405_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_3|NZ_CP021394.1_1761406_1762096_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_4|NZ_CP021394.1_1762134_1762986_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_5|NZ_CP021394.1_1762989_1764948_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|235aa|down_6|NZ_CP021394.1_1764950_1765655_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|813aa|down_7|NZ_CP021394.1_1765661_1768100_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|220aa|down_8|NZ_CP021394.1_1768688_1769348_-	pfam13542, HTH_Tnp_ISL3, Helix-turn-helix domain of transposase family ISL3	NA|500aa|down_9|NZ_CP021394.1_1769442_1770942_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_002838425.1_ASM283842v1	NZ_CP021394	Bifidobacterium breve strain NRBB56 chromosome, complete genome	4	2302252-2302328	4	CRISPRCasFinder	no		c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GCAAATCCCCCAACCAATCGAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|71aa|up_5|NZ_CP021394.1_2294696_2294909_+,NA	NA|393aa|up_9|NZ_CP021394.1_2289355_2290534_-	cd06316, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	NA|194aa|up_8|NZ_CP021394.1_2290859_2291441_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|260aa|up_7|NZ_CP021394.1_2291524_2292304_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|500aa|up_6|NZ_CP021394.1_2292300_2293800_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|71aa|up_5|NZ_CP021394.1_2294696_2294909_+	NA	NA|70aa|up_4|NZ_CP021394.1_2294865_2295075_-	pfam13586, DDE_Tnp_1_2, Transposase DDE domain	NA|145aa|up_3|NZ_CP021394.1_2295223_2295658_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|508aa|up_2|NZ_CP021394.1_2295730_2297254_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1253aa|up_1|NZ_CP021394.1_2297507_2301266_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_CP021394.1_2301275_2301977_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_CP021394.1_2302458_2303931_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_CP021394.1_2303982_2304588_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_CP021394.1_2304738_2305581_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_CP021394.1_2305580_2306435_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_CP021394.1_2306805_2307822_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|443aa|down_5|NZ_CP021394.1_2308029_2309358_-	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|233aa|down_6|NZ_CP021394.1_2309770_2310469_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_7|NZ_CP021394.1_2310555_2310933_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|256aa|down_8|NZ_CP021394.1_2311028_2311796_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|916aa|down_9|NZ_CP021394.1_2311963_2314711_+	COG1511, COG1511, Predicted membrane protein [Function unknown]
