assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002838585.1_ASM283858v1	NZ_CP021559	Bifidobacterium breve strain CNCM I-4321 chromosome, complete genome	1	130208-130544	1	CRISPRCasFinder	no		RT,DEDDh,cas3,WYL	Orphan	TACTGGTGGTTTTGCCCCGCTGAGG	25	0	0	NA	NA	NA	6	6	Orphan	RT,DEDDh,cas3,WYL	NA,NA	NA|308aa|up_9|NZ_CP021559.1_115766_116690_+	PRK03072, PRK03072, heat shock protein HtpX; Provisional	NA|312aa|up_8|NZ_CP021559.1_116955_117891_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|356aa|up_7|NZ_CP021559.1_117953_119021_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|429aa|up_6|NZ_CP021559.1_119188_120475_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|528aa|up_5|NZ_CP021559.1_120498_122082_+	cd01031, EriC, ClC chloride channel EriC	NA|348aa|up_4|NZ_CP021559.1_122269_123313_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|356aa|up_3|NZ_CP021559.1_122640_123708_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|362aa|up_2|NZ_CP021559.1_123982_125068_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|509aa|up_1|NZ_CP021559.1_125494_127021_+	PRK13840, PRK13840, sucrose phosphorylase; Provisional	NA|545aa|up_0|NZ_CP021559.1_127225_128860_+	cd06174, MFS, Major Facilitator Superfamily	NA|456aa|down_0|NZ_CP021559.1_130966_132334_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|351aa|down_1|NZ_CP021559.1_132730_133783_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|351aa|down_2|NZ_CP021559.1_134210_135263_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|605aa|down_3|NZ_CP021559.1_135448_137263_-	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|344aa|down_4|NZ_CP021559.1_137534_138566_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|1471aa|down_5|NZ_CP021559.1_139473_143886_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|612aa|down_6|NZ_CP021559.1_143990_145826_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|320aa|down_7|NZ_CP021559.1_146082_147042_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|739aa|down_8|NZ_CP021559.1_147345_149562_-	PRK14507, PRK14507, malto-oligosyltrehalose synthase	NA|629aa|down_9|NZ_CP021559.1_149818_151705_-	cd11348, AmyAc_2, Alpha amylase catalytic domain found in an uncharacterized protein family
GCF_002838585.1_ASM283858v1	NZ_CP021559	Bifidobacterium breve strain CNCM I-4321 chromosome, complete genome	2	383570-383745	1	PILER-CR	no	RT	RT,DEDDh,cas3,WYL	Unclear	CACCGTCCTGAACGCCATCAGCGGCGTATGGACGAGCGTATGGA	44	0	0	NA	NA	NA	2	2	Orphan	RT,DEDDh,cas3,WYL	NA|178aa|up_9|NZ_CP021559.1_376682_377216_+,NA|112aa|up_5|NZ_CP021559.1_378941_379277_+,NA|92aa|up_4|NZ_CP021559.1_379290_379566_+,NA|122aa|up_3|NZ_CP021559.1_379562_379928_+,NA|197aa|up_2|NZ_CP021559.1_379959_380550_+,NA|107aa|up_1|NZ_CP021559.1_380609_380930_+,NA|261aa|down_0|NZ_CP021559.1_384423_385206_+,NA|199aa|down_2|NZ_CP021559.1_388954_389551_+,NA|527aa|down_4|NZ_CP021559.1_390443_392024_+,NA|58aa|down_6|NZ_CP021559.1_393663_393837_+,NA|106aa|down_7|NZ_CP021559.1_393964_394282_+	NA|178aa|up_9|NZ_CP021559.1_376682_377216_+	NA	NA|302aa|up_8|NZ_CP021559.1_377261_378167_+	pfam05065, Phage_capsid, Phage capsid family	NA|105aa|up_7|NZ_CP021559.1_378166_378481_+	pfam11133, Phage_head_fibr, Head fiber protein	NA|151aa|up_6|NZ_CP021559.1_378492_378945_+	pfam09355, Phage_Gp19, Phage protein Gp19/Gp15/Gp42	NA|112aa|up_5|NZ_CP021559.1_378941_379277_+	NA	NA|92aa|up_4|NZ_CP021559.1_379290_379566_+	NA	NA|122aa|up_3|NZ_CP021559.1_379562_379928_+	NA	NA|197aa|up_2|NZ_CP021559.1_379959_380550_+	NA	NA|107aa|up_1|NZ_CP021559.1_380609_380930_+	NA	NA|131aa|up_0|NZ_CP021559.1_380941_381334_+	pfam17318, DUF5361, Family of unknown function (DUF5361)	NA|261aa|down_0|NZ_CP021559.1_384423_385206_+	NA	NA|1240aa|down_1|NZ_CP021559.1_385225_388945_+	pfam06605, Prophage_tail, Prophage endopeptidase tail	NA|199aa|down_2|NZ_CP021559.1_388954_389551_+	NA	NA|241aa|down_3|NZ_CP021559.1_389704_390427_+	pfam10651, DUF2479, Domain of unknown function (DUF2479)	NA|527aa|down_4|NZ_CP021559.1_390443_392024_+	NA	RT|425aa|down_5|NZ_CP021559.1_392401_393676_+	cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin	NA|58aa|down_6|NZ_CP021559.1_393663_393837_+	NA	NA|106aa|down_7|NZ_CP021559.1_393964_394282_+	NA	NA|412aa|down_8|NZ_CP021559.1_394345_395581_+	cd06417, GH25_LysA-like, LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues	NA|88aa|down_9|NZ_CP021559.1_395667_395931_+	pfam16938, Phage_holin_Dp1, Putative phage holin Dp-1
GCF_002838585.1_ASM283858v1	NZ_CP021559	Bifidobacterium breve strain CNCM I-4321 chromosome, complete genome	3	454621-454925	2	CRISPRCasFinder	no		RT,DEDDh,cas3,WYL	Orphan	CGTCCGCGTCGCCGTCGCTCCGA	23	0	0	NA	NA	NA	5	5	Orphan	RT,DEDDh,cas3,WYL	NA|69aa|up_5|NZ_CP021559.1_442238_442445_+,NA|145aa|up_4|NZ_CP021559.1_442508_442943_+,NA|89aa|up_1|NZ_CP021559.1_451392_451659_+,NA	NA|446aa|up_9|NZ_CP021559.1_437684_439022_-	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|179aa|up_8|NZ_CP021559.1_439252_439789_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|145aa|up_7|NZ_CP021559.1_440111_440546_+	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|233aa|up_6|NZ_CP021559.1_441225_441924_-	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|69aa|up_5|NZ_CP021559.1_442238_442445_+	NA	NA|145aa|up_4|NZ_CP021559.1_442508_442943_+	NA	NA|1243aa|up_3|NZ_CP021559.1_443626_447355_+	pfam05738, Cna_B, Cna protein B-type domain	NA|516aa|up_2|NZ_CP021559.1_447562_449110_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|89aa|up_1|NZ_CP021559.1_451392_451659_+	NA	NA|90aa|up_0|NZ_CP021559.1_451788_452058_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|301aa|down_0|NZ_CP021559.1_456325_457228_-	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|193aa|down_1|NZ_CP021559.1_457689_458268_+	pfam04011, LemA, LemA family	NA|752aa|down_2|NZ_CP021559.1_458333_460589_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|288aa|down_3|NZ_CP021559.1_463033_463897_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|352aa|down_4|NZ_CP021559.1_464164_465220_+	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB)	NA|205aa|down_5|NZ_CP021559.1_465293_465908_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|78aa|down_6|NZ_CP021559.1_465930_466164_-	PRK02821, PRK02821, RNA-binding protein	NA|166aa|down_7|NZ_CP021559.1_466187_466685_-	PRK14520, rpsP, 30S ribosomal protein S16; Provisional	NA|444aa|down_8|NZ_CP021559.1_466904_468236_-	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2	NA|546aa|down_9|NZ_CP021559.1_468487_470125_-	PRK10867, PRK10867, signal recognition particle protein; Provisional
GCF_002838585.1_ASM283858v1	NZ_CP021559	Bifidobacterium breve strain CNCM I-4321 chromosome, complete genome	4	2202158-2202304	3	CRISPRCasFinder	no		RT,DEDDh,cas3,WYL	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	0	0	NA	NA	NA	2	2	Orphan	RT,DEDDh,cas3,WYL	NA|700aa|up_3|NZ_CP021559.1_2197353_2199453_+,NA|318aa|down_0|NZ_CP021559.1_2202418_2203372_+	NA|90aa|up_9|NZ_CP021559.1_2180814_2181084_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|3161aa|up_8|NZ_CP021559.1_2182104_2191587_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_7|NZ_CP021559.1_2191626_2193249_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|623aa|up_6|NZ_CP021559.1_2193241_2195110_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|236aa|up_5|NZ_CP021559.1_2195513_2196221_+	pfam02632, BioY, BioY family	NA|320aa|up_4|NZ_CP021559.1_2196222_2197182_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|700aa|up_3|NZ_CP021559.1_2197353_2199453_+	NA	NA|286aa|up_2|NZ_CP021559.1_2199531_2200389_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_CP021559.1_2200662_2201355_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_CP021559.1_2201370_2201802_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_CP021559.1_2202418_2203372_+	NA	NA|276aa|down_1|NZ_CP021559.1_2203727_2204555_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_CP021559.1_2204587_2204815_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_CP021559.1_2205144_2206350_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_4|NZ_CP021559.1_2206491_2207754_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_CP021559.1_2207849_2208983_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_CP021559.1_2209090_2210782_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_CP021559.1_2210848_2211100_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP021559.1_2211122_2211431_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1006aa|down_9|NZ_CP021559.1_2211617_2214635_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
GCF_002838585.1_ASM283858v1	NZ_CP021559	Bifidobacterium breve strain CNCM I-4321 chromosome, complete genome	5	2364866-2364942	4	CRISPRCasFinder	no		RT,DEDDh,cas3,WYL	Orphan	GCAAATCCCCCAACCAATCGAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,WYL	NA|224aa|up_9|NZ_CP021559.1_2347604_2348276_+,NA	NA|224aa|up_9|NZ_CP021559.1_2347604_2348276_+	NA	NA|350aa|up_8|NZ_CP021559.1_2348733_2349783_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|473aa|up_7|NZ_CP021559.1_2350412_2351831_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|314aa|up_6|NZ_CP021559.1_2351935_2352877_+	pfam02424, ApbE, ApbE family	NA|610aa|up_5|NZ_CP021559.1_2352885_2354715_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|623aa|up_4|NZ_CP021559.1_2354846_2356715_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|174aa|up_3|NZ_CP021559.1_2356898_2357420_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|508aa|up_2|NZ_CP021559.1_2358345_2359869_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1253aa|up_1|NZ_CP021559.1_2360121_2363880_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_CP021559.1_2363889_2364591_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_CP021559.1_2365072_2366545_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_CP021559.1_2366596_2367202_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_CP021559.1_2367352_2368195_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_CP021559.1_2368194_2369049_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_CP021559.1_2369419_2370436_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|443aa|down_5|NZ_CP021559.1_2370643_2371972_-	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|233aa|down_6|NZ_CP021559.1_2372392_2373091_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_7|NZ_CP021559.1_2373177_2373555_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|916aa|down_8|NZ_CP021559.1_2374582_2377330_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|780aa|down_9|NZ_CP021559.1_2377326_2379666_+	COG1511, COG1511, Predicted membrane protein [Function unknown]
