assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002838605.1_ASM283860v1	NZ_CP023193	Bifidobacterium breve strain NRBB18 chromosome, complete genome	1	1660358-1661333	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	 Type I-U?,Type I-U,Type I-C	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,33,33	0	0	NA	NA	I-C:I-C:I-C	14,14,13	14	TypeI-U,TypeI-U?,TypeI-C	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_3|NZ_CP023193.1_1672092_1672326_-	NA|238aa|up_9|NZ_CP023193.1_1646973_1647687_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|525aa|up_8|NZ_CP023193.1_1647746_1649321_-	TIGR03689, pup_AAA, proteasome ATPase	NA|232aa|up_7|NZ_CP023193.1_1649374_1650070_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|251aa|up_6|NZ_CP023193.1_1650090_1650843_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_5|NZ_CP023193.1_1650890_1653200_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_4|NZ_CP023193.1_1653349_1654054_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_3|NZ_CP023193.1_1654193_1655207_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_2|NZ_CP023193.1_1655502_1657365_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_1|NZ_CP023193.1_1657531_1657816_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_0|NZ_CP023193.1_1658101_1659322_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|262aa|down_0|NZ_CP023193.1_1662417_1663203_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|494aa|down_1|NZ_CP023193.1_1663205_1664687_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|254aa|down_2|NZ_CP023193.1_1665492_1666254_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|78aa|down_3|NZ_CP023193.1_1672092_1672326_-	NA	cas2|97aa|down_4|NZ_CP023193.1_1672784_1673075_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_5|NZ_CP023193.1_1673131_1674163_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_6|NZ_CP023193.1_1674164_1674854_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_7|NZ_CP023193.1_1674892_1675744_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_8|NZ_CP023193.1_1675747_1677706_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|235aa|down_9|NZ_CP023193.1_1677708_1678413_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCF_002838605.1_ASM283860v1	NZ_CP023193	Bifidobacterium breve strain NRBB18 chromosome, complete genome	2	1668135-1671268	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	 Type I-U?,Type I-U,Type I-C	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,33,33	0	0	NA	NA	I-C:I-C:I-C	46,46,26	46	TypeI-U,TypeI-U?,TypeI-C	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_0|NZ_CP023193.1_1672092_1672326_-	NA|251aa|up_9|NZ_CP023193.1_1650090_1650843_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_8|NZ_CP023193.1_1650890_1653200_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_7|NZ_CP023193.1_1653349_1654054_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_6|NZ_CP023193.1_1654193_1655207_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_5|NZ_CP023193.1_1655502_1657365_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_4|NZ_CP023193.1_1657531_1657816_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_3|NZ_CP023193.1_1658101_1659322_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|262aa|up_2|NZ_CP023193.1_1662417_1663203_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|494aa|up_1|NZ_CP023193.1_1663205_1664687_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|254aa|up_0|NZ_CP023193.1_1665492_1666254_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|78aa|down_0|NZ_CP023193.1_1672092_1672326_-	NA	cas2|97aa|down_1|NZ_CP023193.1_1672784_1673075_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_2|NZ_CP023193.1_1673131_1674163_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_3|NZ_CP023193.1_1674164_1674854_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_4|NZ_CP023193.1_1674892_1675744_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_5|NZ_CP023193.1_1675747_1677706_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|235aa|down_6|NZ_CP023193.1_1677708_1678413_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|813aa|down_7|NZ_CP023193.1_1678419_1680858_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|181aa|down_8|NZ_CP023193.1_1681516_1682059_-	pfam13542, HTH_Tnp_ISL3, Helix-turn-helix domain of transposase family ISL3	NA|1103aa|down_9|NZ_CP023193.1_1682476_1685785_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed
GCF_002838605.1_ASM283860v1	NZ_CP023193	Bifidobacterium breve strain NRBB18 chromosome, complete genome	3	2015914-2016060	3	CRISPRCasFinder	no		DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|700aa|up_3|NZ_CP023193.1_2011110_2013210_+,NA|318aa|down_0|NZ_CP023193.1_2016174_2017128_+	NA|75aa|up_9|NZ_CP023193.1_1994237_1994462_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|3171aa|up_8|NZ_CP023193.1_1995818_2005331_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_7|NZ_CP023193.1_2005370_2006993_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|627aa|up_6|NZ_CP023193.1_2006985_2008866_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|200aa|up_5|NZ_CP023193.1_2009378_2009978_+	pfam02632, BioY, BioY family	NA|320aa|up_4|NZ_CP023193.1_2009979_2010939_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|700aa|up_3|NZ_CP023193.1_2011110_2013210_+	NA	NA|286aa|up_2|NZ_CP023193.1_2013288_2014146_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_CP023193.1_2014418_2015111_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_CP023193.1_2015126_2015558_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_CP023193.1_2016174_2017128_+	NA	NA|276aa|down_1|NZ_CP023193.1_2017483_2018311_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_CP023193.1_2018343_2018571_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_CP023193.1_2018900_2020106_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_4|NZ_CP023193.1_2020247_2021510_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_CP023193.1_2021605_2022739_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_CP023193.1_2022845_2024537_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_CP023193.1_2024603_2024855_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP023193.1_2024877_2025186_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1021aa|down_9|NZ_CP023193.1_2025372_2028435_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
GCF_002838605.1_ASM283860v1	NZ_CP023193	Bifidobacterium breve strain NRBB18 chromosome, complete genome	4	2182206-2182282	4	CRISPRCasFinder	no		DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GCAAATCCCCCAACCAATCGAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|116aa|up_9|NZ_CP023193.1_2165617_2165965_+,NA	NA|116aa|up_9|NZ_CP023193.1_2165617_2165965_+	NA	NA|347aa|up_8|NZ_CP023193.1_2166084_2167125_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|473aa|up_7|NZ_CP023193.1_2167754_2169173_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|314aa|up_6|NZ_CP023193.1_2169277_2170219_+	pfam02424, ApbE, ApbE family	NA|610aa|up_5|NZ_CP023193.1_2170227_2172057_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|623aa|up_4|NZ_CP023193.1_2172188_2174057_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|174aa|up_3|NZ_CP023193.1_2174240_2174762_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|508aa|up_2|NZ_CP023193.1_2175687_2177211_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1252aa|up_1|NZ_CP023193.1_2177464_2181220_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_CP023193.1_2181229_2181931_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_CP023193.1_2182412_2183885_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_CP023193.1_2183936_2184542_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_CP023193.1_2184692_2185535_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_CP023193.1_2185534_2186389_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_CP023193.1_2186759_2187776_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|443aa|down_5|NZ_CP023193.1_2187983_2189312_-	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|233aa|down_6|NZ_CP023193.1_2189732_2190431_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_7|NZ_CP023193.1_2190517_2190895_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|256aa|down_8|NZ_CP023193.1_2190990_2191758_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|916aa|down_9|NZ_CP023193.1_2191925_2194673_+	COG1511, COG1511, Predicted membrane protein [Function unknown]
