assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002838645.1_ASM283864v1	NZ_CP023195	Bifidobacterium breve strain NRBB20 chromosome, complete genome	1	1660366-1661341	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-U,Type I-C, Type I-U?	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,33,33	0	0	NA	NA	I-C:I-C:I-C	14,14,13	14	TypeI-U,TypeI-C,TypeI-U?	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_3|NZ_CP023195.1_1672100_1672334_-	NA|238aa|up_9|NZ_CP023195.1_1646981_1647695_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|525aa|up_8|NZ_CP023195.1_1647754_1649329_-	TIGR03689, pup_AAA, proteasome ATPase	NA|232aa|up_7|NZ_CP023195.1_1649382_1650078_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|251aa|up_6|NZ_CP023195.1_1650098_1650851_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_5|NZ_CP023195.1_1650898_1653208_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_4|NZ_CP023195.1_1653357_1654062_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_3|NZ_CP023195.1_1654201_1655215_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_2|NZ_CP023195.1_1655510_1657373_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_1|NZ_CP023195.1_1657539_1657824_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_0|NZ_CP023195.1_1658109_1659330_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|262aa|down_0|NZ_CP023195.1_1662425_1663211_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|494aa|down_1|NZ_CP023195.1_1663213_1664695_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|254aa|down_2|NZ_CP023195.1_1665500_1666262_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|78aa|down_3|NZ_CP023195.1_1672100_1672334_-	NA	cas2|97aa|down_4|NZ_CP023195.1_1672793_1673084_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_5|NZ_CP023195.1_1673140_1674172_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_6|NZ_CP023195.1_1674173_1674863_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_7|NZ_CP023195.1_1674901_1675753_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_8|NZ_CP023195.1_1675756_1677715_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|235aa|down_9|NZ_CP023195.1_1677717_1678422_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCF_002838645.1_ASM283864v1	NZ_CP023195	Bifidobacterium breve strain NRBB20 chromosome, complete genome	2	1668143-1671276	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-U,Type I-C, Type I-U?	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,33,33	0	0	NA	NA	I-C:I-C:I-C	46,46,46	46	TypeI-U,TypeI-C,TypeI-U?	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_0|NZ_CP023195.1_1672100_1672334_-	NA|251aa|up_9|NZ_CP023195.1_1650098_1650851_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_8|NZ_CP023195.1_1650898_1653208_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_7|NZ_CP023195.1_1653357_1654062_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_6|NZ_CP023195.1_1654201_1655215_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_5|NZ_CP023195.1_1655510_1657373_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_4|NZ_CP023195.1_1657539_1657824_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_3|NZ_CP023195.1_1658109_1659330_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|262aa|up_2|NZ_CP023195.1_1662425_1663211_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|494aa|up_1|NZ_CP023195.1_1663213_1664695_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|254aa|up_0|NZ_CP023195.1_1665500_1666262_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|78aa|down_0|NZ_CP023195.1_1672100_1672334_-	NA	cas2|97aa|down_1|NZ_CP023195.1_1672793_1673084_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_2|NZ_CP023195.1_1673140_1674172_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_3|NZ_CP023195.1_1674173_1674863_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_4|NZ_CP023195.1_1674901_1675753_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_5|NZ_CP023195.1_1675756_1677715_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|235aa|down_6|NZ_CP023195.1_1677717_1678422_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|813aa|down_7|NZ_CP023195.1_1678428_1680867_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|181aa|down_8|NZ_CP023195.1_1681525_1682068_-	pfam13542, HTH_Tnp_ISL3, Helix-turn-helix domain of transposase family ISL3	NA|1103aa|down_9|NZ_CP023195.1_1682485_1685794_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed
GCF_002838645.1_ASM283864v1	NZ_CP023195	Bifidobacterium breve strain NRBB20 chromosome, complete genome	3	2016118-2016264	3	CRISPRCasFinder	no		DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|700aa|up_3|NZ_CP023195.1_2011314_2013414_+,NA|318aa|down_0|NZ_CP023195.1_2016378_2017332_+	NA|75aa|up_9|NZ_CP023195.1_1994441_1994666_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|3171aa|up_8|NZ_CP023195.1_1996022_2005535_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_7|NZ_CP023195.1_2005574_2007197_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|627aa|up_6|NZ_CP023195.1_2007189_2009070_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|200aa|up_5|NZ_CP023195.1_2009582_2010182_+	pfam02632, BioY, BioY family	NA|320aa|up_4|NZ_CP023195.1_2010183_2011143_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|700aa|up_3|NZ_CP023195.1_2011314_2013414_+	NA	NA|286aa|up_2|NZ_CP023195.1_2013492_2014350_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_CP023195.1_2014622_2015315_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_CP023195.1_2015330_2015762_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_CP023195.1_2016378_2017332_+	NA	NA|276aa|down_1|NZ_CP023195.1_2017687_2018515_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_CP023195.1_2018547_2018775_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_CP023195.1_2019104_2020310_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_4|NZ_CP023195.1_2020451_2021714_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_CP023195.1_2021809_2022943_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_CP023195.1_2023049_2024741_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_CP023195.1_2024807_2025059_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP023195.1_2025081_2025390_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1021aa|down_9|NZ_CP023195.1_2025576_2028639_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
GCF_002838645.1_ASM283864v1	NZ_CP023195	Bifidobacterium breve strain NRBB20 chromosome, complete genome	4	2182412-2182488	4	CRISPRCasFinder	no		DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GCAAATCCCCCAACCAATCGAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|116aa|up_9|NZ_CP023195.1_2165823_2166171_+,NA	NA|116aa|up_9|NZ_CP023195.1_2165823_2166171_+	NA	NA|347aa|up_8|NZ_CP023195.1_2166290_2167331_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|473aa|up_7|NZ_CP023195.1_2167960_2169379_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|314aa|up_6|NZ_CP023195.1_2169483_2170425_+	pfam02424, ApbE, ApbE family	NA|610aa|up_5|NZ_CP023195.1_2170433_2172263_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|623aa|up_4|NZ_CP023195.1_2172394_2174263_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|174aa|up_3|NZ_CP023195.1_2174446_2174968_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|508aa|up_2|NZ_CP023195.1_2175893_2177417_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1252aa|up_1|NZ_CP023195.1_2177670_2181426_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_CP023195.1_2181435_2182137_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_CP023195.1_2182618_2184091_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_CP023195.1_2184142_2184748_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_CP023195.1_2184898_2185741_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_CP023195.1_2185740_2186595_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_CP023195.1_2186965_2187982_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|443aa|down_5|NZ_CP023195.1_2188189_2189518_-	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|233aa|down_6|NZ_CP023195.1_2189938_2190637_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_7|NZ_CP023195.1_2190723_2191101_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|256aa|down_8|NZ_CP023195.1_2191196_2191964_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|916aa|down_9|NZ_CP023195.1_2192131_2194879_+	COG1511, COG1511, Predicted membrane protein [Function unknown]
