assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002838705.1_ASM283870v1	NZ_CP023198	Bifidobacterium breve strain DRBB29 chromosome, complete genome	1	132790-133126	1	CRISPRCasFinder	no		RT,DEDDh,cas3,WYL	Orphan	TACTGGTGGTTTTGCCCCGCTGAGG	25	0	0	NA	NA	NA	6	6	Orphan	RT,DEDDh,cas3,WYL	NA,NA|264aa|down_3|NZ_CP023198.1_138117_138909_-	NA|314aa|up_9|NZ_CP023198.1_117994_118936_+	PRK03072, PRK03072, heat shock protein HtpX; Provisional	NA|312aa|up_8|NZ_CP023198.1_119201_120137_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|356aa|up_7|NZ_CP023198.1_120199_121267_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|429aa|up_6|NZ_CP023198.1_121434_122721_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|528aa|up_5|NZ_CP023198.1_122744_124328_+	cd01031, EriC, ClC chloride channel EriC	NA|348aa|up_4|NZ_CP023198.1_124515_125559_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|356aa|up_3|NZ_CP023198.1_124886_125954_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|509aa|up_2|NZ_CP023198.1_128078_129605_+	PRK13840, PRK13840, sucrose phosphorylase; Provisional	NA|545aa|up_1|NZ_CP023198.1_129809_131444_+	cd06174, MFS, Major Facilitator Superfamily	NA|351aa|up_0|NZ_CP023198.1_131513_132566_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|456aa|down_0|NZ_CP023198.1_133547_134915_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|351aa|down_1|NZ_CP023198.1_135307_136360_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|351aa|down_2|NZ_CP023198.1_136787_137840_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|264aa|down_3|NZ_CP023198.1_138117_138909_-	NA	NA|343aa|down_4|NZ_CP023198.1_138905_139934_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|605aa|down_5|NZ_CP023198.1_140140_141955_-	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|344aa|down_6|NZ_CP023198.1_142226_143258_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|1471aa|down_7|NZ_CP023198.1_144130_148543_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|613aa|down_8|NZ_CP023198.1_148647_150486_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|320aa|down_9|NZ_CP023198.1_150742_151702_+	cd05827, Sortase_C, Sortase domain found in class C sortases
GCF_002838705.1_ASM283870v1	NZ_CP023198	Bifidobacterium breve strain DRBB29 chromosome, complete genome	2	363721-363896	1	PILER-CR	no	RT	RT,DEDDh,cas3,WYL	Unclear	CACCGTCCTGAACGCCATCAGCGGCGTATGGACGAGCGTATGGA	44	0	0	NA	NA	NA	2	2	Orphan	RT,DEDDh,cas3,WYL	NA|105aa|up_7|NZ_CP023198.1_358319_358634_+,NA|112aa|up_5|NZ_CP023198.1_359094_359430_+,NA|92aa|up_4|NZ_CP023198.1_359441_359717_+,NA|122aa|up_3|NZ_CP023198.1_359713_360079_+,NA|197aa|up_2|NZ_CP023198.1_360110_360701_+,NA|107aa|up_1|NZ_CP023198.1_360760_361081_+,NA|261aa|down_0|NZ_CP023198.1_364573_365356_+,NA|199aa|down_2|NZ_CP023198.1_369104_369701_+,NA|527aa|down_4|NZ_CP023198.1_370593_372174_+,NA|58aa|down_6|NZ_CP023198.1_373820_373994_+,NA|108aa|down_7|NZ_CP023198.1_374121_374445_+	NA|178aa|up_9|NZ_CP023198.1_356835_357369_+	pfam14265, DUF4355, Domain of unknown function (DUF4355)	NA|302aa|up_8|NZ_CP023198.1_357414_358320_+	pfam05065, Phage_capsid, Phage capsid family	NA|105aa|up_7|NZ_CP023198.1_358319_358634_+	NA	NA|151aa|up_6|NZ_CP023198.1_358645_359098_+	pfam09355, Phage_Gp19, Phage protein Gp19/Gp15/Gp42	NA|112aa|up_5|NZ_CP023198.1_359094_359430_+	NA	NA|92aa|up_4|NZ_CP023198.1_359441_359717_+	NA	NA|122aa|up_3|NZ_CP023198.1_359713_360079_+	NA	NA|197aa|up_2|NZ_CP023198.1_360110_360701_+	NA	NA|107aa|up_1|NZ_CP023198.1_360760_361081_+	NA	NA|131aa|up_0|NZ_CP023198.1_361092_361485_+	pfam17318, DUF5361, Family of unknown function (DUF5361)	NA|261aa|down_0|NZ_CP023198.1_364573_365356_+	NA	NA|1240aa|down_1|NZ_CP023198.1_365375_369095_+	pfam06605, Prophage_tail, Prophage endopeptidase tail	NA|199aa|down_2|NZ_CP023198.1_369104_369701_+	NA	NA|241aa|down_3|NZ_CP023198.1_369854_370577_+	pfam10651, DUF2479, Domain of unknown function (DUF2479)	NA|527aa|down_4|NZ_CP023198.1_370593_372174_+	NA	RT|415aa|down_5|NZ_CP023198.1_372588_373833_+	cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin	NA|58aa|down_6|NZ_CP023198.1_373820_373994_+	NA	NA|108aa|down_7|NZ_CP023198.1_374121_374445_+	NA	NA|411aa|down_8|NZ_CP023198.1_374512_375745_+	cd06417, GH25_LysA-like, LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues	NA|89aa|down_9|NZ_CP023198.1_375829_376096_+	pfam16938, Phage_holin_Dp1, Putative phage holin Dp-1
GCF_002838705.1_ASM283870v1	NZ_CP023198	Bifidobacterium breve strain DRBB29 chromosome, complete genome	3	441246-441555	1,2	CRT,PILER-CR	no		RT,DEDDh,cas3,WYL	Orphan	GTNNNCGTNGCCGTCGTTCCGA,TCGAGGATGACTACGAGGATCGTCCGCGTCGCCGTCGTTCCGATGACCG	22,49	0	0	NA	NA	NA:NA	5,2	5	Orphan	RT,DEDDh,cas3,WYL	NA|69aa|up_6|NZ_CP023198.1_428914_429121_+,NA|165aa|up_5|NZ_CP023198.1_429124_429619_+,NA|227aa|up_2|NZ_CP023198.1_435895_436576_+,NA|229aa|up_1|NZ_CP023198.1_437656_438343_+,NA	NA|414aa|up_9|NZ_CP023198.1_426502_427744_+	pfam14110, DUF4282, Domain of unknown function (DUF4282)	NA|72aa|up_8|NZ_CP023198.1_427976_428192_+	smart00257, LysM, Lysin motif	NA|93aa|up_7|NZ_CP023198.1_428251_428530_+	pfam16938, Phage_holin_Dp1, Putative phage holin Dp-1	NA|69aa|up_6|NZ_CP023198.1_428914_429121_+	NA	NA|165aa|up_5|NZ_CP023198.1_429124_429619_+	NA	NA|1243aa|up_4|NZ_CP023198.1_430304_434033_+	pfam05738, Cna_B, Cna protein B-type domain	NA|516aa|up_3|NZ_CP023198.1_434240_435788_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|227aa|up_2|NZ_CP023198.1_435895_436576_+	NA	NA|229aa|up_1|NZ_CP023198.1_437656_438343_+	NA	NA|90aa|up_0|NZ_CP023198.1_438472_438742_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|196aa|down_0|NZ_CP023198.1_442573_443161_+	pfam04011, LemA, LemA family	NA|752aa|down_1|NZ_CP023198.1_443226_445482_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|288aa|down_2|NZ_CP023198.1_447924_448788_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|352aa|down_3|NZ_CP023198.1_449055_450111_+	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB)	NA|205aa|down_4|NZ_CP023198.1_450187_450802_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|78aa|down_5|NZ_CP023198.1_450824_451058_-	PRK02821, PRK02821, RNA-binding protein	NA|153aa|down_6|NZ_CP023198.1_451081_451540_-	PRK14520, rpsP, 30S ribosomal protein S16; Provisional	NA|444aa|down_7|NZ_CP023198.1_451759_453091_-	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2	NA|546aa|down_8|NZ_CP023198.1_453151_454789_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|349aa|down_9|NZ_CP023198.1_455023_456070_+	pfam01545, Cation_efflux, Cation efflux family
GCF_002838705.1_ASM283870v1	NZ_CP023198	Bifidobacterium breve strain DRBB29 chromosome, complete genome	4	2173362-2173507	2	CRISPRCasFinder	no		RT,DEDDh,cas3,WYL	Orphan	AATCTCCTAAAATCCTGTCACTAA	24	0	0	NA	NA	NA	2	2	Orphan	RT,DEDDh,cas3,WYL	NA|700aa|up_4|NZ_CP023198.1_2168558_2170658_+,NA|67aa|up_0|NZ_CP023198.1_2173112_2173313_+,NA	NA|3146aa|up_9|NZ_CP023198.1_2153353_2162791_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_8|NZ_CP023198.1_2162830_2164453_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|623aa|up_7|NZ_CP023198.1_2164445_2166314_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|200aa|up_6|NZ_CP023198.1_2166826_2167426_+	pfam02632, BioY, BioY family	NA|320aa|up_5|NZ_CP023198.1_2167427_2168387_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|700aa|up_4|NZ_CP023198.1_2168558_2170658_+	NA	NA|286aa|up_3|NZ_CP023198.1_2170736_2171594_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_2|NZ_CP023198.1_2171867_2172560_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_1|NZ_CP023198.1_2172575_2173007_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|67aa|up_0|NZ_CP023198.1_2173112_2173313_+	NA	NA|276aa|down_0|NZ_CP023198.1_2173655_2174483_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_1|NZ_CP023198.1_2174515_2174743_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_2|NZ_CP023198.1_2175072_2176278_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_3|NZ_CP023198.1_2176419_2177682_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_4|NZ_CP023198.1_2177777_2178911_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_5|NZ_CP023198.1_2179016_2180708_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_6|NZ_CP023198.1_2180774_2181026_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_7|NZ_CP023198.1_2181048_2181357_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1024aa|down_8|NZ_CP023198.1_2181543_2184615_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family	NA|402aa|down_9|NZ_CP023198.1_2185057_2186263_-	cd05647, M20_DapE_actinobac, M20 Peptidase actinobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase
GCF_002838705.1_ASM283870v1	NZ_CP023198	Bifidobacterium breve strain DRBB29 chromosome, complete genome	5	2236355-2236636	3	CRISPRCasFinder	no		RT,DEDDh,cas3,WYL	Orphan	AGCGAAGCAAAATCGTGATTAAA	23	0	0	NA	NA	NA	5	5	Orphan	RT,DEDDh,cas3,WYL	NA|274aa|up_5|NZ_CP023198.1_2227719_2228541_+,NA|305aa|down_8|NZ_CP023198.1_2246752_2247667_+	NA|262aa|up_9|NZ_CP023198.1_2221128_2221914_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|448aa|up_8|NZ_CP023198.1_2222047_2223391_-	cd07383, MPP_Dcr2, Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain	NA|746aa|up_7|NZ_CP023198.1_2223922_2226160_+	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|477aa|up_6|NZ_CP023198.1_2226299_2227730_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|274aa|up_5|NZ_CP023198.1_2227719_2228541_+	NA	NA|675aa|up_4|NZ_CP023198.1_2229394_2231419_-	COG3408, GDB1, Glycogen debranching enzyme [Carbohydrate transport and metabolism]	NA|295aa|up_3|NZ_CP023198.1_2231470_2232355_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|410aa|up_2|NZ_CP023198.1_2232356_2233586_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|416aa|up_1|NZ_CP023198.1_2233708_2234956_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|341aa|up_0|NZ_CP023198.1_2235269_2236292_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|214aa|down_0|NZ_CP023198.1_2236805_2237447_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|160aa|down_1|NZ_CP023198.1_2237683_2238163_+	pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase	NA|370aa|down_2|NZ_CP023198.1_2238204_2239314_-	cd08585, GDPD_like_3, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|366aa|down_3|NZ_CP023198.1_2239339_2240437_-	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS	NA|890aa|down_4|NZ_CP023198.1_2240904_2243574_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|310aa|down_5|NZ_CP023198.1_2243996_2244926_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|274aa|down_6|NZ_CP023198.1_2244942_2245764_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|242aa|down_7|NZ_CP023198.1_2245853_2246579_-	pfam13828, DUF4190, Domain of unknown function (DUF4190)	NA|305aa|down_8|NZ_CP023198.1_2246752_2247667_+	NA	NA|393aa|down_9|NZ_CP023198.1_2247774_2248953_-	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
