assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002844685.1_ASM284468v1	NZ_CP025328	Escherichia coli strain ExPEC XM chromosome, complete genome	1	761676-761806	1	CRISPRCasFinder	no		DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL,RT	Orphan	AGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAA	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL,RT	NA|125aa|up_6|NZ_CP025328.1_755928_756303_-,NA|36aa|up_4|NZ_CP025328.1_757939_758047_-,NA	NA|245aa|up_9|NZ_CP025328.1_753172_753907_+	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins	NA|264aa|up_8|NZ_CP025328.1_753942_754734_+	PRK10445, PRK10445, endonuclease VIII; Provisional	NA|349aa|up_7|NZ_CP025328.1_754730_755777_-	COG3180, AbrB, Putative ammonia monooxygenase [General function prediction only]	NA|125aa|up_6|NZ_CP025328.1_755928_756303_-	NA	NA|428aa|up_5|NZ_CP025328.1_756450_757734_-	PRK05614, gltA, citrate synthase	NA|36aa|up_4|NZ_CP025328.1_757939_758047_-	NA	NA|130aa|up_3|NZ_CP025328.1_758442_758832_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|NZ_CP025328.1_758825_759173_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|NZ_CP025328.1_759172_760939_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|NZ_CP025328.1_760954_761671_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|NZ_CP025328.1_762031_764833_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|NZ_CP025328.1_764847_766065_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|NZ_CP025328.1_766158_767325_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|NZ_CP025328.1_767324_768194_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|372aa|down_4|NZ_CP025328.1_768433_769549_+	sd00006, TPR, Tetratricopeptide repeat	NA|523aa|down_5|NZ_CP025328.1_770878_772447_+	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|380aa|down_6|NZ_CP025328.1_772462_773602_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|38aa|down_7|NZ_CP025328.1_773616_773730_+	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|98aa|down_8|NZ_CP025328.1_773729_774023_+	PRK10588, PRK10588, hypothetical protein; Provisional	NA|135aa|down_9|NZ_CP025328.1_774172_774577_+	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional
GCF_002844685.1_ASM284468v1	NZ_CP025328	Escherichia coli strain ExPEC XM chromosome, complete genome	2	1017017-1017344	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas7f,cas6f	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL,RT	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	1	1	1017285-1017316	NZ_CP025329.1_182340-182371	I-F:I-F:I-F	4,5,5	5	TypeI-F	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL,RT	NA,NA	NA|551aa|up_9|NZ_CP025328.1_1003599_1005252_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP025328.1_1005395_1006295_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP025328.1_1006615_1007311_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP025328.1_1007736_1009395_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_CP025328.1_1009391_1010348_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP025328.1_1010498_1011614_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP025328.1_1011610_1013557_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP025328.1_1013629_1013854_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP025328.1_1014176_1014497_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP025328.1_1014527_1016804_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|down_0|NZ_CP025328.1_1017516_1018500_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|down_1|NZ_CP025328.1_1018496_1021730_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|down_2|NZ_CP025328.1_1022059_1023367_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas7f|334aa|down_3|NZ_CP025328.1_1024297_1025299_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_4|NZ_CP025328.1_1025309_1025864_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_5|NZ_CP025328.1_1026905_1027124_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_6|NZ_CP025328.1_1027408_1028113_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_7|NZ_CP025328.1_1028154_1029876_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_8|NZ_CP025328.1_1029876_1031643_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_9|NZ_CP025328.1_1031765_1032731_-	PRK10262, PRK10262, thioredoxin reductase; Provisional
GCF_002844685.1_ASM284468v1	NZ_CP025328	Escherichia coli strain ExPEC XM chromosome, complete genome	3	1026405-1026793	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas7f,cas6f	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL,RT	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	1	1	1026614-1026645	NZ_CP025329.1_59517-59486	I-F:I-F:I-F	5,6,6	6	TypeI-F	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL,RT	NA,NA	NA|372aa|up_9|NZ_CP025328.1_1010498_1011614_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_8|NZ_CP025328.1_1011610_1013557_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_7|NZ_CP025328.1_1013629_1013854_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_6|NZ_CP025328.1_1014176_1014497_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_5|NZ_CP025328.1_1014527_1016804_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|up_4|NZ_CP025328.1_1017516_1018500_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|up_3|NZ_CP025328.1_1018496_1021730_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|up_2|NZ_CP025328.1_1022059_1023367_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas7f|334aa|up_1|NZ_CP025328.1_1024297_1025299_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|up_0|NZ_CP025328.1_1025309_1025864_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_0|NZ_CP025328.1_1026905_1027124_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP025328.1_1027408_1028113_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP025328.1_1028154_1029876_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP025328.1_1029876_1031643_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP025328.1_1031765_1032731_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP025328.1_1033274_1033769_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1348aa|down_6|NZ_CP025328.1_1033903_1037947_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP025328.1_1038105_1038717_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP025328.1_1038727_1040071_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP025328.1_1040161_1041454_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_002844685.1_ASM284468v1	NZ_CP025328	Escherichia coli strain ExPEC XM chromosome, complete genome	4	4695024-4695151	4	CRISPRCasFinder	no		DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL,RT	Orphan	GCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACA	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL,RT	NA,NA	NA|529aa|up_9|NZ_CP025328.1_4684619_4686206_+	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]	NA|108aa|up_8|NZ_CP025328.1_4686208_4686532_-	PRK10219, PRK10219, superoxide response transcriptional regulator SoxS	NA|155aa|up_7|NZ_CP025328.1_4686617_4687082_+	PRK15002, PRK15002, redox-sensitive transcriptional activator SoxR	NA|450aa|up_6|NZ_CP025328.1_4687628_4688978_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|550aa|up_5|NZ_CP025328.1_4689128_4690778_+	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309	NA|295aa|up_4|NZ_CP025328.1_4690813_4691698_-	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold	NA|137aa|up_3|NZ_CP025328.1_4691801_4692212_+	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only]	NA|230aa|up_2|NZ_CP025328.1_4692204_4692894_+	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	NA|550aa|up_1|NZ_CP025328.1_4692932_4694582_-	PRK09395, actP, cation/acetate symporter ActP	NA|105aa|up_0|NZ_CP025328.1_4694578_4694893_-	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|653aa|down_0|NZ_CP025328.1_4695184_4697143_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|479aa|down_1|NZ_CP025328.1_4697534_4698971_+	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase	NA|189aa|down_2|NZ_CP025328.1_4699015_4699582_+	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional	NA|224aa|down_3|NZ_CP025328.1_4699578_4700250_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|319aa|down_4|NZ_CP025328.1_4700246_4701203_+	TIGR03148, cyt_nit_nrfD, cytochrome c nitrite reductase, NrfD subunit	NA|541aa|down_5|NZ_CP025328.1_4701318_4702941_+	PRK10369, PRK10369, heme lyase subunit NrfE; Provisional	NA|128aa|down_6|NZ_CP025328.1_4702933_4703317_+	PRK10144, PRK10144, formate-dependent nitrite reductase complex subunit NrfF; Provisional	NA|199aa|down_7|NZ_CP025328.1_4703313_4703910_+	PRK10370, PRK10370, formate-dependent nitrite reductase complex subunit NrfG; Provisional	NA|438aa|down_8|NZ_CP025328.1_4704252_4705566_+	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|230aa|down_9|NZ_CP025328.1_4705713_4706403_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]
GCF_002844685.1_ASM284468v1	NZ_CP025328	Escherichia coli strain ExPEC XM chromosome, complete genome	5	4968802-4968941	5	CRISPRCasFinder	no		DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL,RT	Orphan	TGTGTAGGTCGGATAAGGCGTTCACGTCGCATCCGACAATAACA	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,WYL,RT	NA,NA	NA|335aa|up_9|NZ_CP025328.1_4957346_4958351_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|315aa|up_8|NZ_CP025328.1_4958361_4959306_-	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|407aa|up_7|NZ_CP025328.1_4959316_4960537_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|151aa|up_6|NZ_CP025328.1_4961214_4961667_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|335aa|up_5|NZ_CP025328.1_4961712_4962717_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP025328.1_4962878_4963295_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP025328.1_4963471_4963975_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|396aa|up_2|NZ_CP025328.1_4964167_4965355_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP025328.1_4965401_4968257_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP025328.1_4968256_4968700_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP025328.1_4968957_4970469_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP025328.1_4970735_4971836_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP025328.1_4971835_4972918_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP025328.1_4973078_4974581_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_CP025328.1_4974658_4975657_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_CP025328.1_4975723_4977043_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_CP025328.1_4977107_4977872_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_CP025328.1_4977895_4978927_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_CP025328.1_4979143_4979707_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_CP025328.1_4979710_4980730_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
