The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025298	Stenotrophomonas maltophilia strain CSM2 chromosome, complete genome	4739049	290826	301983	4739049	tail,head	Siphoviridae_environmental_samples(37.5%)	13	NA	NA
WP_069138078.1|290826_291339_+|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_101764745.1|291335_291686_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_101764746.1|291709_292066_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_101764747.1|292137_292797_+|tail	phage tail protein	tail	C4ML12	Xanthomonas_virus	56.2	9.2e-61
WP_101764748.1|292796_293105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014035628.1|293155_293413_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	32.9	1.6e-05
WP_101764749.1|293524_294847_+|tail	phage tail protein	tail	K7PM62	Enterobacteria_phage	32.0	6.4e-21
WP_014035630.1|294846_295176_+|tail	phage tail protein	tail	C7BGC9	Burkholderia_phage	52.7	1.6e-21
WP_101764750.1|295187_296405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101764751.1|296401_297097_+|tail	phage minor tail protein L	tail	A0A2R3UA90	Siphoviridae_environmental_samples	67.1	9.6e-93
WP_101764752.1|297159_297900_+	C40 family peptidase	NA	A0A2R3UAR4	Siphoviridae_environmental_samples	58.5	1.3e-79
WP_101764753.1|297892_298498_+|tail	tail assembly protein	tail	W0LI27	Edwardsiella_phage	52.0	8.2e-48
WP_101764754.1|298494_301983_+	host specificity protein J	NA	A0A2R3UA88	Siphoviridae_environmental_samples	58.7	0.0e+00
>prophage 2
NZ_CP025298	Stenotrophomonas maltophilia strain CSM2 chromosome, complete genome	4739049	2308026	2317362	4739049		Stenotrophomonas_phage(83.33%)	14	NA	NA
WP_101765446.1|2308026_2308413_-	hypothetical protein	NA	S0F2J2	Stenotrophomonas_phage	98.4	5.4e-61
WP_101765447.1|2308558_2308843_+	hypothetical protein	NA	S0F3S0	Stenotrophomonas_phage	67.6	4.3e-15
WP_101765448.1|2308832_2309039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101765449.1|2309028_2310084_+	phage replication protein	NA	S0F3F7	Stenotrophomonas_phage	98.3	8.3e-205
WP_101765450.1|2310065_2310344_+	hypothetical protein	NA	S0F2M9	Stenotrophomonas_phage	98.9	2.3e-45
WP_101765451.1|2310347_2310551_+	hypothetical protein	NA	S0F2M5	Stenotrophomonas_phage	95.5	2.8e-29
WP_101765452.1|2310559_2310793_+	methyltransferase	NA	A0A1W6DXZ2	Xanthomonas_phage	64.9	1.7e-14
WP_101765453.1|2310891_2312328_+	hypothetical protein	NA	S0F309	Stenotrophomonas_phage	61.1	2.5e-135
WP_049405310.1|2312330_2312642_+	DUF2523 domain-containing protein	NA	S0F3R9	Stenotrophomonas_phage	91.2	1.0e-46
WP_101765454.1|2312643_2313846_+	hypothetical protein	NA	S0F3F8	Stenotrophomonas_phage	83.5	6.1e-196
WP_101765455.1|2313842_2314469_+	conjugal transfer protein	NA	S0F2N7	Stenotrophomonas_phage	80.2	2.8e-83
WP_158297994.1|2314562_2314949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101765456.1|2315016_2315355_-	hypothetical protein	NA	S0F2N2	Stenotrophomonas_phage	93.8	1.4e-52
WP_032966761.1|2316585_2317362_-	hypothetical protein	NA	K4NXB8	Burkholderia_phage	30.5	8.2e-08
>prophage 3
NZ_CP025298	Stenotrophomonas maltophilia strain CSM2 chromosome, complete genome	4739049	3295734	3363181	4739049	tail,protease,tRNA,transposase	Xanthomonas_virus(22.22%)	54	NA	NA
WP_101765864.1|3295734_3296505_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_014037971.1|3296537_3296900_-	VOC family protein	NA	NA	NA	NA	NA
WP_101765865.1|3296926_3298954_-	fimbrial protein FimV	NA	NA	NA	NA	NA
WP_049445577.1|3299058_3300087_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_101765866.1|3300179_3301217_-	D-glycerate dehydrogenase	NA	M1HTA3	Paramecium_bursaria_Chlorella_virus	24.3	3.0e-13
WP_005410486.1|3301209_3302313_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.2	7.6e-76
WP_101765867.1|3302309_3303239_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_005417991.1|3303361_3304012_+	SCO family protein	NA	NA	NA	NA	NA
WP_049445583.1|3304008_3304851_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_014037978.1|3304922_3305270_-	ribonuclease E inhibitor RraB	NA	NA	NA	NA	NA
WP_101765868.1|3305293_3306904_-	transglycosylase SLT domain-containing protein	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	30.4	2.5e-11
WP_049445586.1|3307026_3308532_+	DUF853 family protein	NA	A0A248XCZ8	Klebsiella_phage	46.8	3.4e-87
WP_014037981.1|3308621_3309128_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_101765869.1|3309215_3310055_-	DUF3025 domain-containing protein	NA	NA	NA	NA	NA
WP_101765870.1|3310051_3311413_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_049445590.1|3311601_3311817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101765871.1|3311906_3320195_-|tail	phage tail protein	tail	I7HDJ4	Xanthomonas_virus	47.8	4.9e-10
WP_049445594.1|3320185_3320581_-	hypothetical protein	NA	Q2NPH1	Xanthomonas_virus	48.1	4.7e-28
WP_014037987.1|3320580_3321042_-	DUF1833 family protein	NA	I7GYA2	Xanthomonas_virus	50.3	8.5e-37
WP_014037988.1|3321038_3321392_-	hypothetical protein	NA	I7H418	Xanthomonas_virus	39.0	4.8e-16
WP_101765872.1|3321388_3323704_-|tail	phage tail protein	tail	A0A2R3UAA7	Siphoviridae_environmental_samples	33.2	3.0e-37
WP_014037990.1|3323798_3324017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014037991.1|3324121_3324466_-	hypothetical protein	NA	G9FHI3	Rhodococcus_phage	50.0	7.5e-22
WP_014037992.1|3324465_3324924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049445708.1|3325289_3325961_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_014037994.1|3325957_3326380_+	HIT family protein	NA	NA	NA	NA	NA
WP_014037995.1|3326628_3327201_-	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	70.2	4.5e-72
WP_042359268.1|3327279_3328134_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_049445602.1|3328347_3331137_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	31.7	1.6e-117
WP_049445604.1|3331548_3334356_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	31.6	1.2e-112
WP_049445606.1|3334474_3337591_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_049445607.1|3338151_3340254_+	peptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	32.4	3.7e-79
WP_101765873.1|3340476_3342486_+	M13 family metallopeptidase	NA	NA	NA	NA	NA
WP_101765874.1|3342610_3343105_+	VOC family protein	NA	NA	NA	NA	NA
WP_101766432.1|3343180_3344764_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005410509.1|3344813_3345488_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_101766433.1|3345581_3345890_-	cysteine methyltransferase	NA	NA	NA	NA	NA
WP_075677048.1|3345916_3346837_-	DMT family transporter	NA	NA	NA	NA	NA
WP_075677046.1|3347021_3348380_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	24.4	1.4e-34
WP_049445618.1|3348376_3349627_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_101765875.1|3349630_3350875_-	DUF418 domain-containing protein	NA	NA	NA	NA	NA
WP_014647924.1|3350974_3351457_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_049445709.1|3351568_3352108_+	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	43.5	1.8e-22
WP_005414115.1|3352239_3353013_+	C40 family peptidase	NA	A0A0A8WIF2	Clostridium_phage	42.5	8.4e-21
WP_101765876.1|3353302_3354637_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
WP_101765877.1|3354791_3356498_+	alkaline phosphatase	NA	NA	NA	NA	NA
WP_101765878.1|3356494_3357040_+	WG repeat-containing protein	NA	NA	NA	NA	NA
WP_158298003.1|3357358_3357463_-|transposase	transposase	transposase	A4JX31	Burkholderia_virus	76.9	9.4e-05
WP_158298004.1|3357596_3357929_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_101765881.1|3358773_3360102_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_101765882.1|3360138_3360399_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_049447171.1|3360388_3361267_+	geranyl transferase	NA	NA	NA	NA	NA
WP_014038018.1|3361354_3361726_-	DUF4870 domain-containing protein	NA	NA	NA	NA	NA
WP_101765883.1|3361813_3363181_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
