assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002848445.1_ASM284844v1	NZ_CP025435	Gordonia sp. YC-JH1 chromosome, complete genome	1	212435-212569	1	CRISPRCasFinder	no		WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CCCAGGCTGGTTGAGCGAGCGAAGCGAGTCGAAACCACCG	40	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|316aa|up_8|NZ_CP025435.1_202340_203288_+,NA|476aa|up_1|NZ_CP025435.1_207524_208952_+,NA|131aa|down_3|NZ_CP025435.1_218506_218899_-,NA|190aa|down_5|NZ_CP025435.1_219945_220515_+,NA|74aa|down_8|NZ_CP025435.1_222063_222285_+	NA|389aa|up_9|NZ_CP025435.1_201091_202258_-	PRK06849, PRK06849, hypothetical protein; Provisional	NA|316aa|up_8|NZ_CP025435.1_202340_203288_+	NA	NA|255aa|up_7|NZ_CP025435.1_203295_204060_-	PRK00208, thiG, thiazole synthase; Reviewed	NA|66aa|up_6|NZ_CP025435.1_204085_204283_-	PRK05863, PRK05863, sulfur carrier protein ThiS; Provisional	NA|386aa|up_5|NZ_CP025435.1_204273_205431_-	TIGR02352, Glycine_oxidase, glycine oxidase ThiO	NA|226aa|up_4|NZ_CP025435.1_205580_206258_+	PRK00043, thiE, thiamine phosphate synthase	NA|121aa|up_3|NZ_CP025435.1_206515_206878_+	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated	NA|153aa|up_2|NZ_CP025435.1_206915_207374_-	pfam00293, NUDIX, NUDIX domain	NA|476aa|up_1|NZ_CP025435.1_207524_208952_+	NA	NA|328aa|up_0|NZ_CP025435.1_208948_209932_+	cd13690, PBP2_GluB, Substrate binding domain of ABC glutamate transporter; the type 2 periplasmic binding protein fold	NA|408aa|down_0|NZ_CP025435.1_214464_215688_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|717aa|down_1|NZ_CP025435.1_215684_217835_-	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|183aa|down_2|NZ_CP025435.1_217890_218439_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|131aa|down_3|NZ_CP025435.1_218506_218899_-	NA	NA|300aa|down_4|NZ_CP025435.1_218945_219845_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|190aa|down_5|NZ_CP025435.1_219945_220515_+	NA	NA|200aa|down_6|NZ_CP025435.1_220521_221121_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|281aa|down_7|NZ_CP025435.1_221145_221988_+	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|74aa|down_8|NZ_CP025435.1_222063_222285_+	NA	NA|369aa|down_9|NZ_CP025435.1_222244_223351_-	cd03386, PAP2_Aur1_like, PAP2_like proteins, Aur1_like subfamily
GCF_002848445.1_ASM284844v1	NZ_CP025435	Gordonia sp. YC-JH1 chromosome, complete genome	2	569928-570054	2	CRISPRCasFinder	no		WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CCTCCTCAGGCTTGTTGAGCGAGCGAAGCGAGTCGAAACCCC	42	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|234aa|up_9|NZ_CP025435.1_558446_559148_-,NA|288aa|up_0|NZ_CP025435.1_569021_569885_+,NA|423aa|down_1|NZ_CP025435.1_571399_572668_-,NA|300aa|down_9|NZ_CP025435.1_583954_584854_-	NA|234aa|up_9|NZ_CP025435.1_558446_559148_-	NA	NA|245aa|up_8|NZ_CP025435.1_559234_559969_-	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)	NA|264aa|up_7|NZ_CP025435.1_559968_560760_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|347aa|up_6|NZ_CP025435.1_560777_561818_-	pfam01032, FecCD, FecCD transport family	NA|313aa|up_5|NZ_CP025435.1_561825_562764_-	cd01148, TroA_a, Metal binding protein TroA_a	NA|267aa|up_4|NZ_CP025435.1_563043_563844_-	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|183aa|up_3|NZ_CP025435.1_564531_565080_+	COG3226, COG3226, Uncharacterized protein conserved in bacteria [Function unknown]	NA|516aa|up_2|NZ_CP025435.1_565079_566627_+	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|387aa|up_1|NZ_CP025435.1_567855_569016_+	PRK00555, PRK00555, galactokinase; Provisional	NA|288aa|up_0|NZ_CP025435.1_569021_569885_+	NA	NA|449aa|down_0|NZ_CP025435.1_570056_571403_-	pfam03583, LIP, Secretory lipase	NA|423aa|down_1|NZ_CP025435.1_571399_572668_-	NA	NA|402aa|down_2|NZ_CP025435.1_572958_574164_+	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|293aa|down_3|NZ_CP025435.1_575915_576794_+	PRK08260, PRK08260, enoyl-CoA hydratase; Provisional	NA|113aa|down_4|NZ_CP025435.1_576798_577137_-	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|234aa|down_5|NZ_CP025435.1_577451_578153_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|394aa|down_6|NZ_CP025435.1_578331_579513_+	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA)	NA|314aa|down_7|NZ_CP025435.1_579633_580575_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|425aa|down_8|NZ_CP025435.1_580571_581846_+	pfam13535, ATP-grasp_4, ATP-grasp domain	NA|300aa|down_9|NZ_CP025435.1_583954_584854_-	NA
GCF_002848445.1_ASM284844v1	NZ_CP025435	Gordonia sp. YC-JH1 chromosome, complete genome	3	1084656-1084780	3	CRISPRCasFinder	no		WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GTGTCGGTCACGGTGCGCGTGGC	23	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|222aa|up_1|NZ_CP025435.1_1082970_1083636_+,NA|239aa|down_7|NZ_CP025435.1_1091484_1092201_-	NA|292aa|up_9|NZ_CP025435.1_1069223_1070099_+	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form	NA|203aa|up_8|NZ_CP025435.1_1070101_1070710_+	cd00438, cupin_RmlC, RmlC carbohydrate epimerase, involved in dTDP-L-rhamnose production	NA|453aa|up_7|NZ_CP025435.1_1070783_1072142_-	cd09603, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain	NA|338aa|up_6|NZ_CP025435.1_1076329_1077343_+	TIGR03554, F420_G6P_DH, glucose-6-phosphate dehydrogenase (coenzyme-F420)	NA|426aa|up_5|NZ_CP025435.1_1077559_1078837_+	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	NA|245aa|up_4|NZ_CP025435.1_1078845_1079580_+	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein	NA|627aa|up_3|NZ_CP025435.1_1079581_1081462_+	TIGR03062, hypothetical_protein_lp_1332, YhgE/Pip C-terminal domain	NA|461aa|up_2|NZ_CP025435.1_1081510_1082893_+	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|222aa|up_1|NZ_CP025435.1_1082970_1083636_+	NA	NA|333aa|up_0|NZ_CP025435.1_1083632_1084631_+	pfam12833, HTH_18, Helix-turn-helix domain	NA|357aa|down_0|NZ_CP025435.1_1085421_1086492_+	PRK09685, PRK09685, DNA-binding transcriptional activator FeaR; Provisional	NA|271aa|down_1|NZ_CP025435.1_1086510_1087323_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|560aa|down_2|NZ_CP025435.1_1087370_1089050_-	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|117aa|down_3|NZ_CP025435.1_1089293_1089644_+	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|261aa|down_4|NZ_CP025435.1_1089672_1090455_-	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|162aa|down_5|NZ_CP025435.1_1090459_1090945_-	pfam01337, Barstar, Barstar (barnase inhibitor)	NA|171aa|down_6|NZ_CP025435.1_1090941_1091454_-	pfam00545, Ribonuclease, ribonuclease	NA|239aa|down_7|NZ_CP025435.1_1091484_1092201_-	NA	NA|197aa|down_8|NZ_CP025435.1_1092211_1092802_-	PRK00150, def, peptide deformylase; Reviewed	NA|119aa|down_9|NZ_CP025435.1_1092970_1093327_+	pfam11662, DUF3263, Protein of unknown function (DUF3263)
GCF_002848445.1_ASM284844v1	NZ_CP025435	Gordonia sp. YC-JH1 chromosome, complete genome	4	1318624-1318764	4	CRISPRCasFinder	no		WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GCCTGGAGGGTCGCTCGGCAGCTGTTTCAGGGTTGCCGTATCGAGACCGCCTGT	54	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|263aa|up_6|NZ_CP025435.1_1311090_1311879_+,NA|171aa|up_5|NZ_CP025435.1_1312357_1312870_+,NA	NA|381aa|up_9|NZ_CP025435.1_1308948_1310091_-	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase	NA|163aa|up_8|NZ_CP025435.1_1310070_1310559_+	pfam10698, DUF2505, Protein of unknown function (DUF2505)	NA|171aa|up_7|NZ_CP025435.1_1310581_1311094_+	pfam10698, DUF2505, Protein of unknown function (DUF2505)	NA|263aa|up_6|NZ_CP025435.1_1311090_1311879_+	NA	NA|171aa|up_5|NZ_CP025435.1_1312357_1312870_+	NA	NA|275aa|up_4|NZ_CP025435.1_1312895_1313720_+	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|382aa|up_3|NZ_CP025435.1_1313712_1314858_+	pfam11209, DUF2993, Protein of unknown function (DUF2993)	NA|226aa|up_2|NZ_CP025435.1_1314889_1315567_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|296aa|up_1|NZ_CP025435.1_1315594_1316482_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|253aa|up_0|NZ_CP025435.1_1316499_1317258_-	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|255aa|down_0|NZ_CP025435.1_1319072_1319837_-	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2	NA|264aa|down_1|NZ_CP025435.1_1321465_1322257_-	pfam07739, TipAS, TipAS antibiotic-recognition domain	NA|485aa|down_2|NZ_CP025435.1_1322253_1323708_-	pfam06738, ThrE, Putative threonine/serine exporter	NA|159aa|down_3|NZ_CP025435.1_1324032_1324509_-	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain	NA|524aa|down_4|NZ_CP025435.1_1324584_1326156_+	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|145aa|down_5|NZ_CP025435.1_1326152_1326587_+	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|399aa|down_6|NZ_CP025435.1_1326583_1327780_+	pfam06224, HTH_42, Winged helix DNA-binding domain	NA|236aa|down_7|NZ_CP025435.1_1327832_1328540_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|513aa|down_8|NZ_CP025435.1_1328536_1330075_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|142aa|down_9|NZ_CP025435.1_1330096_1330522_+	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
GCF_002848445.1_ASM284844v1	NZ_CP025435	Gordonia sp. YC-JH1 chromosome, complete genome	5	1414681-1414771	5	CRISPRCasFinder	no		WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CGACCGGGTGGTCGAGCAGACCGGG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|150aa|up_3|NZ_CP025435.1_1411396_1411846_-,NA|83aa|down_4|NZ_CP025435.1_1423349_1423598_+	NA|290aa|up_9|NZ_CP025435.1_1402640_1403510_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|409aa|up_8|NZ_CP025435.1_1403685_1404912_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|421aa|up_7|NZ_CP025435.1_1405797_1407059_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|372aa|up_6|NZ_CP025435.1_1407143_1408259_-	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit	NA|401aa|up_5|NZ_CP025435.1_1409223_1410426_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|304aa|up_4|NZ_CP025435.1_1410425_1411337_-	PRK08290, PRK08290, enoyl-CoA hydratase; Provisional	NA|150aa|up_3|NZ_CP025435.1_1411396_1411846_-	NA	NA|117aa|up_2|NZ_CP025435.1_1412440_1412791_-	COG1146, COG1146, Ferredoxin [Energy production and conversion]	NA|200aa|up_1|NZ_CP025435.1_1412795_1413395_-	pfam10006, DUF2249, Uncharacterized conserved protein (DUF2249)	NA|274aa|up_0|NZ_CP025435.1_1413472_1414294_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|629aa|down_0|NZ_CP025435.1_1415361_1417248_+	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional	NA|598aa|down_1|NZ_CP025435.1_1417271_1419065_-	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|765aa|down_2|NZ_CP025435.1_1419228_1421523_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|566aa|down_3|NZ_CP025435.1_1421598_1423296_+	pfam10081, Abhydrolase_9, Alpha/beta-hydrolase family	NA|83aa|down_4|NZ_CP025435.1_1423349_1423598_+	NA	NA|224aa|down_5|NZ_CP025435.1_1423640_1424312_-	pfam13305, WHG, WHG domain	NA|483aa|down_6|NZ_CP025435.1_1424367_1425816_+	COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|360aa|down_7|NZ_CP025435.1_1425857_1426937_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|289aa|down_8|NZ_CP025435.1_1428524_1429391_+	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|130aa|down_9|NZ_CP025435.1_1429471_1429861_+	pfam17844, SCP_3, Bacterial SCP ortholog
GCF_002848445.1_ASM284844v1	NZ_CP025435	Gordonia sp. YC-JH1 chromosome, complete genome	6	1944417-1944736	1	CRT	no		WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	NNNCCGCGGCNAAGAAGACGGCNCCGGCGAAGANGNCNGCCGCC	44	0	0	NA	NA	NA	4	4	Orphan	WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|278aa|up_9|NZ_CP025435.1_1931466_1932300_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|611aa|up_8|NZ_CP025435.1_1932333_1934166_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|500aa|up_7|NZ_CP025435.1_1934180_1935680_+	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|308aa|up_6|NZ_CP025435.1_1937130_1938054_+	cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like proteins found in archaea and bacteria	NA|523aa|up_5|NZ_CP025435.1_1938066_1939635_+	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|251aa|up_4|NZ_CP025435.1_1939644_1940397_+	cd04778, HTH_MerR-like_sg2, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily	NA|167aa|up_3|NZ_CP025435.1_1940378_1940879_-	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|240aa|up_2|NZ_CP025435.1_1940922_1941642_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|479aa|up_1|NZ_CP025435.1_1941777_1943214_+	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|197aa|up_0|NZ_CP025435.1_1943251_1943842_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|302aa|down_0|NZ_CP025435.1_1944857_1945763_-	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|244aa|down_1|NZ_CP025435.1_1947959_1948691_-	TIGR03552, F420_cofC, 2-phospho-L-lactate guanylyltransferase	NA|337aa|down_2|NZ_CP025435.1_1948817_1949828_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|192aa|down_3|NZ_CP025435.1_1949835_1950411_-	pfam12028, DUF3515, Protein of unknown function (DUF3515)	NA|326aa|down_4|NZ_CP025435.1_1950490_1951468_+	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|175aa|down_5|NZ_CP025435.1_1951485_1952010_+	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|226aa|down_6|NZ_CP025435.1_1952006_1952684_+	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|264aa|down_7|NZ_CP025435.1_1952694_1953486_-	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional	NA|64aa|down_8|NZ_CP025435.1_1953627_1953819_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|552aa|down_9|NZ_CP025435.1_1954135_1955791_+	TIGR03599, YloV, DAK2 domain fusion protein YloV
GCF_002848445.1_ASM284844v1	NZ_CP025435	Gordonia sp. YC-JH1 chromosome, complete genome	7	2075253-2075348	6	CRISPRCasFinder	no	csa3	WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-A	CTTCTCCTGTCAGGCTCGTCGAGT	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|252aa|up_3|NZ_CP025435.1_2071618_2072374_+,NA|207aa|down_6|NZ_CP025435.1_2087467_2088088_-	NA|181aa|up_9|NZ_CP025435.1_2066327_2066870_-	pfam18085, Mak_N_cap, Maltokinase N-terminal cap domain	NA|221aa|up_8|NZ_CP025435.1_2067204_2067867_-	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]	NA|210aa|up_7|NZ_CP025435.1_2067866_2068496_-	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase	NA|470aa|up_6|NZ_CP025435.1_2068589_2069999_+	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|301aa|up_5|NZ_CP025435.1_2070029_2070932_-	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|103aa|up_4|NZ_CP025435.1_2071146_2071455_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|252aa|up_3|NZ_CP025435.1_2071618_2072374_+	NA	NA|277aa|up_2|NZ_CP025435.1_2072458_2073289_+	TIGR03971, short-chain_dehydrogenase/reductase_SDR, SDR family mycofactocin-dependent oxidoreductase	NA|163aa|up_1|NZ_CP025435.1_2073440_2073929_+	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea	NA|420aa|up_0|NZ_CP025435.1_2073972_2075232_+	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|404aa|down_0|NZ_CP025435.1_2075437_2076649_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|1124aa|down_1|NZ_CP025435.1_2076705_2080077_-	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	NA|536aa|down_2|NZ_CP025435.1_2080236_2081844_+	PRK08316, PRK08316, acyl-CoA synthetase; Validated	NA|128aa|down_3|NZ_CP025435.1_2083039_2083423_+	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|236aa|down_4|NZ_CP025435.1_2086198_2086906_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|70aa|down_5|NZ_CP025435.1_2087178_2087388_+	pfam05532, CsbD, CsbD-like	NA|207aa|down_6|NZ_CP025435.1_2087467_2088088_-	NA	NA|213aa|down_7|NZ_CP025435.1_2088186_2088825_-	PRK09424, pntA, Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA|350aa|down_8|NZ_CP025435.1_2089064_2090114_+	COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism]	NA|155aa|down_9|NZ_CP025435.1_2090190_2090655_+	cd15457, NADAR, Escherichia coli swarming motility protein YbiA and related proteins
GCF_002848445.1_ASM284844v1	NZ_CP025435	Gordonia sp. YC-JH1 chromosome, complete genome	8	2174677-2174753	7	CRISPRCasFinder	no		WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GTCCGCTCCAGTCCGTTCCAGTCCGC	26	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|138aa|up_9|NZ_CP025435.1_2161025_2161439_-,NA|712aa|up_8|NZ_CP025435.1_2161435_2163571_-,NA|605aa|up_7|NZ_CP025435.1_2163567_2165382_-,NA|162aa|up_4|NZ_CP025435.1_2170157_2170643_+,NA|144aa|up_3|NZ_CP025435.1_2171038_2171470_-,NA|181aa|up_2|NZ_CP025435.1_2171487_2172030_-,NA|245aa|up_1|NZ_CP025435.1_2172187_2172922_-,NA|247aa|up_0|NZ_CP025435.1_2173644_2174385_-,NA|210aa|down_0|NZ_CP025435.1_2174859_2175489_-	NA|138aa|up_9|NZ_CP025435.1_2161025_2161439_-	NA	NA|712aa|up_8|NZ_CP025435.1_2161435_2163571_-	NA	NA|605aa|up_7|NZ_CP025435.1_2163567_2165382_-	NA	NA|238aa|up_6|NZ_CP025435.1_2165378_2166092_-	pfam00589, Phage_integrase, Phage integrase family	NA|258aa|up_5|NZ_CP025435.1_2166066_2166840_-	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|162aa|up_4|NZ_CP025435.1_2170157_2170643_+	NA	NA|144aa|up_3|NZ_CP025435.1_2171038_2171470_-	NA	NA|181aa|up_2|NZ_CP025435.1_2171487_2172030_-	NA	NA|245aa|up_1|NZ_CP025435.1_2172187_2172922_-	NA	NA|247aa|up_0|NZ_CP025435.1_2173644_2174385_-	NA	NA|210aa|down_0|NZ_CP025435.1_2174859_2175489_-	NA	NA|399aa|down_1|NZ_CP025435.1_2175705_2176902_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|214aa|down_2|NZ_CP025435.1_2176898_2177540_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|255aa|down_3|NZ_CP025435.1_2177659_2178424_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|553aa|down_4|NZ_CP025435.1_2179879_2181538_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|205aa|down_5|NZ_CP025435.1_2181534_2182149_-	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator	NA|400aa|down_6|NZ_CP025435.1_2182246_2183446_+	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|165aa|down_7|NZ_CP025435.1_2183343_2183838_-	pfam16571, FBP_C, FBP C-terminal treble-clef zinc-finger	NA|196aa|down_8|NZ_CP025435.1_2184223_2184811_+	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|253aa|down_9|NZ_CP025435.1_2185065_2185824_+	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
GCF_002848445.1_ASM284844v1	NZ_CP025435	Gordonia sp. YC-JH1 chromosome, complete genome	9	3471364-3471430	8	CRISPRCasFinder	no		WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GCTTCGCTCGCTCAACTGGCCTGG	24	1	1	3471388-3471406	NZ_CP025435.1_2277286-2277268	NA	1	1	Orphan	WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|83aa|up_9|NZ_CP025435.1_3461744_3461993_-,NA|51aa|up_8|NZ_CP025435.1_3461996_3462149_-,NA|259aa|down_3|NZ_CP025435.1_3475246_3476023_+,NA|231aa|down_4|NZ_CP025435.1_3476253_3476946_+	NA|83aa|up_9|NZ_CP025435.1_3461744_3461993_-	NA	NA|51aa|up_8|NZ_CP025435.1_3461996_3462149_-	NA	NA|374aa|up_7|NZ_CP025435.1_3463706_3464828_-	PRK09358, PRK09358, adenosine deaminase; Provisional	NA|338aa|up_6|NZ_CP025435.1_3464879_3465893_-	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|437aa|up_5|NZ_CP025435.1_3465935_3467246_-	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|142aa|up_4|NZ_CP025435.1_3467242_3467668_-	PRK05578, PRK05578, cytidine deaminase; Validated	NA|136aa|up_3|NZ_CP025435.1_3467863_3468271_+	cd03501, SQR_TypeA_SdhC_like, Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase C (SdhC)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol	NA|144aa|up_2|NZ_CP025435.1_3468286_3468718_+	cd03500, SQR_TypeA_SdhD_like, Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase D (SdhD)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol	NA|585aa|up_1|NZ_CP025435.1_3468734_3470489_+	PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|262aa|up_0|NZ_CP025435.1_3470488_3471274_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|415aa|down_0|NZ_CP025435.1_3471621_3472866_+	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|354aa|down_1|NZ_CP025435.1_3472867_3473929_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|353aa|down_2|NZ_CP025435.1_3473991_3475050_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|259aa|down_3|NZ_CP025435.1_3475246_3476023_+	NA	NA|231aa|down_4|NZ_CP025435.1_3476253_3476946_+	NA	NA|281aa|down_5|NZ_CP025435.1_3476974_3477817_-	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|427aa|down_6|NZ_CP025435.1_3477826_3479107_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|406aa|down_7|NZ_CP025435.1_3479179_3480397_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|437aa|down_8|NZ_CP025435.1_3480942_3482253_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|387aa|down_9|NZ_CP025435.1_3482301_3483462_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional
GCF_002848445.1_ASM284844v1	NZ_CP025435	Gordonia sp. YC-JH1 chromosome, complete genome	10	3509606-3515610	9,2,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGCTCCCCGCGCGAGCGGGGATGGTCC,GTGCTCCCCGCGCGAGCGGGGATGGTCCN,GTGCTCCCCGCGCGAGCGGGGATGGTCC	28,29,28	23	23	3510123-3510155|3512014-3512046|3512623-3512655|3513842-3513874|3514086-3514118|3514330-3514362|3514452-3514484|3514879-3514911|3514940-3514972|3515306-3515338|3515428-3515460|3515489-3515521|3512020-3512052|3512635-3512667|3513854-3513886|3514098-3514130|3514342-3514374|3514464-3514496|3514891-3514923|3514952-3514984|3515318-3515350|3515440-3515472|3515501-3515533	NZ_CP025435.1_2004146-2004114|NZ_CP025435.1_2006772-2006804|NZ_CP025435.1_2012960-2012992|NZ_CP025435.1_1999429-1999397|NZ_CP025435.1_2017188-2017156|NZ_CP025435.1_2021727-2021759|NZ_CP025435.1_1987170-1987202|NZ_CP025435.1_2024215-2024183|NZ_CP025435.1_2001534-2001502|NZ_CP025435.1_2001096-2001128|NZ_CP025435.1_1999800-1999768|NZ_CP025435.1_2004146-2004114|NZ_CP025435.1_2006772-2006804|NZ_CP025435.1_2012960-2012992|NZ_CP025435.1_1999429-1999397|NZ_CP025435.1_2017188-2017156|NZ_CP025435.1_2021727-2021759|NZ_CP025435.1_1987170-1987202|NZ_CP025435.1_2024215-2024183|NZ_CP025435.1_2001534-2001502|NZ_CP025435.1_2001096-2001128|NZ_CP025435.1_1999800-1999768|NZ_CP025435.1_2004146-2004114	I-E:I-E:I-E	98,98,71	98	TypeI-E	WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|171aa|up_6|NZ_CP025435.1_3500894_3501407_+,NA|73aa|up_1|NZ_CP025435.1_3507063_3507282_+,NA|82aa|down_3|NZ_CP025435.1_3523269_3523515_+,NA|209aa|down_4|NZ_CP025435.1_3523644_3524271_+	NA|640aa|up_9|NZ_CP025435.1_3495247_3497167_+	PRK07201, PRK07201, SDR family oxidoreductase	NA|355aa|up_8|NZ_CP025435.1_3497200_3498265_+	cd06820, PLPDE_III_LS_D-TA_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like	NA|536aa|up_7|NZ_CP025435.1_3498298_3499906_-	cd03468, PolY_like, DNA Polymerase Y-family	NA|171aa|up_6|NZ_CP025435.1_3500894_3501407_+	NA	NA|312aa|up_5|NZ_CP025435.1_3501479_3502415_-	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|223aa|up_4|NZ_CP025435.1_3503771_3504440_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|413aa|up_3|NZ_CP025435.1_3504436_3505675_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|428aa|up_2|NZ_CP025435.1_3505783_3507067_+	pfam04024, PspC, PspC domain	NA|73aa|up_1|NZ_CP025435.1_3507063_3507282_+	NA	NA|528aa|up_0|NZ_CP025435.1_3507710_3509294_-	PRK00074, guaA, GMP synthase; Reviewed	NA|504aa|down_0|NZ_CP025435.1_3515777_3517289_+	pfam00665, rve, Integrase core domain	NA|263aa|down_1|NZ_CP025435.1_3517285_3518074_+	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|113aa|down_2|NZ_CP025435.1_3522920_3523259_+	pfam14436, EndoU_bacteria, Bacterial EndoU nuclease	NA|82aa|down_3|NZ_CP025435.1_3523269_3523515_+	NA	NA|209aa|down_4|NZ_CP025435.1_3523644_3524271_+	NA	cas3|928aa|down_5|NZ_CP025435.1_3524942_3527726_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|530aa|down_6|NZ_CP025435.1_3527722_3529312_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|174aa|down_7|NZ_CP025435.1_3529412_3529934_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|358aa|down_8|NZ_CP025435.1_3529962_3531036_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|234aa|down_9|NZ_CP025435.1_3531032_3531734_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCF_002848445.1_ASM284844v1	NZ_CP025435	Gordonia sp. YC-JH1 chromosome, complete genome	11	3518176-3522347	2,10,3,3,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGCTCCCCGCGCGAGCGGGGATGGTCC,GTGCTCCCCGCGCGAGCGGGGATGGTCC,GTGCTCCCCGCGCGAGCGGGGATGGTCCN,GTGCTCCCCGCGCGAGCGGGGATGGTCC,GTGCTCCCCGCGCGAGCGGGGATGGTCC	28,28,29,28,28	9	9	3518448-3518480|3518509-3518541|3519180-3519212|3520468-3520500|3520651-3520683|3520773-3520805|3520894-3520926|3520895-3520926|3520900-3520932	NZ_CP025435.1_2010014-2010046|NZ_CP025435.1_1978812-1978844|NZ_CP025435.1_1975019-1974987|NZ_CP025435.1_2007375-2007343|NZ_CP025435.1_2020433-2020465|NZ_CP025435.1_2019793-2019825|NZ_CP025435.1_2018129-2018097|NZ_CP025435.1_2018128-2018097|NZ_CP025435.1_2018129-2018097	I-E:I-E:I-E:I-E:I-E	65,68,68,65,65	68	TypeI-E	WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|171aa|up_8|NZ_CP025435.1_3500894_3501407_+,NA|73aa|up_3|NZ_CP025435.1_3507063_3507282_+,NA|82aa|down_1|NZ_CP025435.1_3523269_3523515_+,NA|209aa|down_2|NZ_CP025435.1_3523644_3524271_+	NA|536aa|up_9|NZ_CP025435.1_3498298_3499906_-	cd03468, PolY_like, DNA Polymerase Y-family	NA|171aa|up_8|NZ_CP025435.1_3500894_3501407_+	NA	NA|312aa|up_7|NZ_CP025435.1_3501479_3502415_-	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|223aa|up_6|NZ_CP025435.1_3503771_3504440_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|413aa|up_5|NZ_CP025435.1_3504436_3505675_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|428aa|up_4|NZ_CP025435.1_3505783_3507067_+	pfam04024, PspC, PspC domain	NA|73aa|up_3|NZ_CP025435.1_3507063_3507282_+	NA	NA|528aa|up_2|NZ_CP025435.1_3507710_3509294_-	PRK00074, guaA, GMP synthase; Reviewed	NA|504aa|up_1|NZ_CP025435.1_3515777_3517289_+	pfam00665, rve, Integrase core domain	NA|263aa|up_0|NZ_CP025435.1_3517285_3518074_+	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|113aa|down_0|NZ_CP025435.1_3522920_3523259_+	pfam14436, EndoU_bacteria, Bacterial EndoU nuclease	NA|82aa|down_1|NZ_CP025435.1_3523269_3523515_+	NA	NA|209aa|down_2|NZ_CP025435.1_3523644_3524271_+	NA	cas3|928aa|down_3|NZ_CP025435.1_3524942_3527726_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|530aa|down_4|NZ_CP025435.1_3527722_3529312_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|174aa|down_5|NZ_CP025435.1_3529412_3529934_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|358aa|down_6|NZ_CP025435.1_3529962_3531036_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|234aa|down_7|NZ_CP025435.1_3531032_3531734_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|224aa|down_8|NZ_CP025435.1_3531734_3532406_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|326aa|down_9|NZ_CP025435.1_3532407_3533385_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI
GCF_002848445.1_ASM284844v1	NZ_CP025435	Gordonia sp. YC-JH1 chromosome, complete genome	12	3533821-3536044	5,11,4	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGCTCCCCGCGCGAGCGGGGATGGTCC,GTGCTCCCCGCGCGAGCGGGGATGGTCC,GTGCTCCCCGCGCGAGCGGGGATGGTCC	28,28,28	3	3	3534825-3534857|3535008-3535040|3535435-3535467	NZ_CP025435.1_2014094-2014062|NZ_CP025435.1_2017557-2017589|NZ_CP025435.1_1974822-1974854	I-E:I-E:I-E	15,36,36	36	TypeI-E	WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|82aa|up_9|NZ_CP025435.1_3523269_3523515_+,NA|209aa|up_8|NZ_CP025435.1_3523644_3524271_+,NA	NA|82aa|up_9|NZ_CP025435.1_3523269_3523515_+	NA	NA|209aa|up_8|NZ_CP025435.1_3523644_3524271_+	NA	cas3|928aa|up_7|NZ_CP025435.1_3524942_3527726_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|530aa|up_6|NZ_CP025435.1_3527722_3529312_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|174aa|up_5|NZ_CP025435.1_3529412_3529934_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|358aa|up_4|NZ_CP025435.1_3529962_3531036_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|234aa|up_3|NZ_CP025435.1_3531032_3531734_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|224aa|up_2|NZ_CP025435.1_3531734_3532406_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|326aa|up_1|NZ_CP025435.1_3532407_3533385_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|116aa|up_0|NZ_CP025435.1_3533378_3533726_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|206aa|down_0|NZ_CP025435.1_3536207_3536825_+	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]	NA|233aa|down_1|NZ_CP025435.1_3536817_3537516_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|199aa|down_2|NZ_CP025435.1_3537512_3538109_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|313aa|down_3|NZ_CP025435.1_3538377_3539316_+	TIGR01136, Cysteine_synthase, cysteine synthase	NA|194aa|down_4|NZ_CP025435.1_3539315_3539897_+	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase	NA|577aa|down_5|NZ_CP025435.1_3539975_3541706_-	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|215aa|down_6|NZ_CP025435.1_3541760_3542405_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|408aa|down_7|NZ_CP025435.1_3542350_3543574_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|97aa|down_8|NZ_CP025435.1_3543640_3543931_-	pfam14117, DUF4287, Domain of unknown function (DUF4287)	NA|389aa|down_9|NZ_CP025435.1_3544111_3545278_-	PRK08649, PRK08649, GuaB3 family IMP dehydrogenase-related protein
GCF_002848445.1_ASM284844v1	NZ_CP025435	Gordonia sp. YC-JH1 chromosome, complete genome	13	3982609-3982722	12	CRISPRCasFinder	no		WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GTTGAGCGAGCGCAGCGAGTCGAAACC	27	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|431aa|up_9|NZ_CP025435.1_3969488_3970781_-	PRK09646, PRK09646, ECF RNA polymerase sigma factor SigK	NA|445aa|up_8|NZ_CP025435.1_3970846_3972181_-	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|248aa|up_7|NZ_CP025435.1_3972177_3972921_-	pfam07103, DUF1365, Protein of unknown function (DUF1365)	NA|443aa|up_6|NZ_CP025435.1_3972917_3974246_-	COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only]	NA|466aa|up_5|NZ_CP025435.1_3974311_3975709_+	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]	NA|222aa|up_4|NZ_CP025435.1_3975725_3976391_-	COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]	NA|581aa|up_3|NZ_CP025435.1_3976544_3978287_+	cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain	NA|295aa|up_2|NZ_CP025435.1_3978301_3979186_-	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|575aa|up_1|NZ_CP025435.1_3979184_3980909_+	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]	NA|500aa|up_0|NZ_CP025435.1_3981066_3982566_+	cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins	NA|371aa|down_0|NZ_CP025435.1_3982773_3983886_+	TIGR03989, Zn-dependent_alcohol_dehydrogenase_class_III, NDMA-dependent alcohol dehydrogenase, Rxyl_3153 family	NA|167aa|down_1|NZ_CP025435.1_3983985_3984486_-	pfam01613, Flavin_Reduct, Flavin reductase like domain	NA|200aa|down_2|NZ_CP025435.1_3985094_3985694_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|264aa|down_3|NZ_CP025435.1_3985693_3986485_-	PRK07827, PRK07827, enoyl-CoA hydratase family protein	NA|386aa|down_4|NZ_CP025435.1_3986710_3987868_-	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|673aa|down_5|NZ_CP025435.1_3987915_3989934_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|534aa|down_6|NZ_CP025435.1_3989945_3991547_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|387aa|down_7|NZ_CP025435.1_3991543_3992704_-	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	NA|574aa|down_8|NZ_CP025435.1_3992707_3994429_-	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA	NA|263aa|down_9|NZ_CP025435.1_3994477_3995266_-	TIGR03084, conserved_hypothetical_protein, TIGR03084 family protein
