The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP019600	Brachyspira hyodysenteriae strain BH718 chromosome, complete genome	2998332	2111231	2119168	2998332		uncultured_virus(33.33%)	11	NA	NA
WP_020064808.1|2111231_2112497_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	30.8	7.5e-35
WP_012671545.1|2112624_2113980_+	signal recognition particle protein	NA	D6PHS7	uncultured_phage	31.7	4.6e-06
WP_020064809.1|2114002_2114362_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_008726607.1|2114394_2114637_+	KH domain-containing protein	NA	NA	NA	NA	NA
WP_028331356.1|2114633_2115143_+	16S rRNA processing protein RimM	NA	NA	NA	NA	NA
WP_047101338.1|2115255_2115927_+	DUF305 domain-containing protein	NA	A0A218MND9	uncultured_virus	34.1	1.2e-12
WP_012671549.1|2116041_2116527_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	49.3	1.7e-32
WP_012671550.1|2116532_2116814_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047101337.1|2116817_2118044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012671552.1|2118275_2118542_-	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	36.1	4.4e-06
WP_012671553.1|2118655_2119168_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.7	2.6e-31
>prophage 2
NZ_CP019600	Brachyspira hyodysenteriae strain BH718 chromosome, complete genome	2998332	2842762	2901856	2998332	coat,transposase,tRNA	Cafeteria_roenbergensis_virus(20.0%)	53	NA	NA
WP_085168835.1|2842762_2843668_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_085168837.1|2843825_2845265_+	dihydropyrimidinase	NA	NA	NA	NA	NA
WP_028331320.1|2845352_2846339_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_020064356.1|2846502_2847924_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_047111671.1|2848064_2849549_+	glycoside hydrolase family 32 protein	NA	NA	NA	NA	NA
WP_012669634.1|2849618_2850083_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_012669635.1|2850250_2851744_+	glycogen synthase GlgA	NA	NA	NA	NA	NA
WP_012669636.1|2851780_2852305_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_012669637.1|2852450_2853248_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_012669638.1|2853272_2854058_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_012669639.1|2854151_2855438_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
WP_012669640.1|2855620_2856049_+	PepSY-like domain-containing protein	NA	NA	NA	NA	NA
WP_047111672.1|2856111_2858487_-	glycoside hydrolase family 3 C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_047105017.1|2858547_2859072_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_047105018.1|2859062_2859626_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_047101731.1|2860337_2861153_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	46.0	3.7e-51
WP_047101732.1|2861641_2862322_+|coat	spore coat protein	coat	NA	NA	NA	NA
WP_012669646.1|2862311_2862701_+	GIY-YIG nuclease family protein	NA	G0T5A8	Wiseana_iridescent_virus	36.0	5.0e-06
WP_012669647.1|2862758_2863556_+	transketolase	NA	NA	NA	NA	NA
WP_012669648.1|2863597_2864515_+	transketolase family protein	NA	NA	NA	NA	NA
WP_012669649.1|2864592_2864772_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_012669650.1|2864791_2865007_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_012669651.1|2865086_2865617_-	DUF308 domain-containing protein	NA	NA	NA	NA	NA
WP_047101733.1|2865757_2866660_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_012669653.1|2866674_2867016_+	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
WP_012669654.1|2867009_2867975_-	HPr(Ser) kinase/phosphatase	NA	NA	NA	NA	NA
WP_012669655.1|2867974_2868439_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_020064371.1|2868476_2869253_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_012669657.1|2869269_2870574_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_101638633.1|2870566_2873857_-	DUF4132 domain-containing protein	NA	NA	NA	NA	NA
WP_020064373.1|2873932_2874769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012669660.1|2874836_2875595_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_012669661.1|2875671_2876421_-	uracil-DNA glycosylase	NA	A0A127AW33	Bacillus_phage	36.2	8.1e-21
WP_012669662.1|2876736_2877600_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_047101740.1|2877657_2879163_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_012669664.1|2879411_2880317_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_047113469.1|2880421_2882281_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.6	2.6e-60
WP_020064377.1|2882560_2883748_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA	NA
WP_012669667.1|2883924_2884701_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_012669668.1|2884788_2885631_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_012669669.1|2885934_2886309_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_080513314.1|2886360_2886696_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_186433807.1|2886863_2887706_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_047109272.1|2887876_2889025_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_012669673.1|2889265_2890153_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_020064381.1|2890168_2891509_+	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_047111678.1|2891649_2892561_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_012669677.1|2893632_2894652_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	31.4	9.3e-20
WP_101638634.1|2894806_2897230_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_012669679.1|2897256_2897655_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_047101748.1|2897811_2899653_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_047111681.1|2899671_2900790_-	radical SAM protein	NA	NA	NA	NA	NA
WP_012669682.1|2900986_2901856_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
>prophage 1
NZ_CP019601	Brachyspira hyodysenteriae strain BH718 plasmid pBH718, complete sequence	36316	0	7055	36316		Escherichia_phage(100.0%)	3	NA	NA
WP_101638658.1|649_1753_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_101638653.1|1785_2946_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_012672170.1|6194_7055_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.8	4.8e-33
>prophage 2
NZ_CP019601	Brachyspira hyodysenteriae strain BH718 plasmid pBH718, complete sequence	36316	16082	19536	36316		Clostridioides_phage(50.0%)	4	NA	NA
WP_012672161.1|16082_16826_+	ParA family protein	NA	A0A1V0DZZ0	Clostridioides_phage	26.6	1.9e-09
WP_020064989.1|16827_17064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020064990.1|17073_17859_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_012672158.1|19002_19536_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A1D7XFA9	Escherichia_phage	39.2	1.2e-21
>prophage 3
NZ_CP019601	Brachyspira hyodysenteriae strain BH718 plasmid pBH718, complete sequence	36316	25061	27069	36316		uncultured_Mediterranean_phage(100.0%)	2	NA	NA
WP_044555471.1|25061_26054_+	radical SAM protein	NA	A0A1B1IVD8	uncultured_Mediterranean_phage	21.9	2.8e-13
WP_012672151.1|26064_27069_+	SPASM domain-containing protein	NA	A0A1B1ITW6	uncultured_Mediterranean_phage	22.5	1.3e-10
>prophage 4
NZ_CP019601	Brachyspira hyodysenteriae strain BH718 plasmid pBH718, complete sequence	36316	34938	35859	36316		Tetraselmis_virus(100.0%)	1	NA	NA
WP_047100908.1|34938_35859_+	DUF616 domain-containing protein	NA	A0A2P0VMU2	Tetraselmis_virus	36.8	7.4e-32
