assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002850415.1_ASM285041v1	NZ_CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	1	499890-499974	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,csa3	Orphan	CTTTTCGTCAGCTTCTATGTTGGGGCCC	28	1	5	499918-499946|499918-499946|499918-499946|499918-499946|499918-499946	NZ_CP020714.1_83706-83678|NZ_CP020714.1_1980200-1980228|NZ_CP020714.1_1987409-1987437|NZ_CP020714.1_2347042-2347014|NZ_CP020714.1_2671083-2671055	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA,NA	NA|228aa|up_9|NZ_CP020714.1_489071_489755_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP020714.1_489997_490174_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP020714.1_490466_491813_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP020714.1_491819_492572_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP020714.1_492573_493512_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP020714.1_493515_494655_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP020714.1_494790_496623_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP020714.1_496691_497318_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP020714.1_497349_498327_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP020714.1_498427_499552_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP020714.1_500113_501937_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP020714.1_502282_502534_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP020714.1_502578_503553_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP020714.1_503609_505757_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP020714.1_505815_506277_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP020714.1_506368_507055_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP020714.1_507094_507811_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP020714.1_507813_508167_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP020714.1_508167_508752_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP020714.1_508741_509311_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_002850415.1_ASM285041v1	NZ_CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	2	761068-761149	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,csa3	Orphan	TGCAAGTTGGGGATGGGCCCCAACA	25	1	15	761093-761124|761093-761124|761093-761124|761093-761124|761093-761124|761093-761124|761093-761124|761093-761124|761093-761124|761093-761124|761093-761124|761093-761124|761093-761124|761093-761124|761093-761124	NZ_CP020714.1_234373-234404|NZ_CP020714.1_322804-322773|NZ_CP020714.1_1136884-1136853|NZ_CP020714.1_1834551-1834582|NZ_CP020714.1_1974866-1974835|NZ_CP020714.1_1980300-1980269|NZ_CP020714.1_2061256-2061287|NZ_CP020714.1_2356289-2356320|NZ_CP020714.1_2635048-2635017|NZ_CP020714.1_532392-532361|NZ_CP020714.1_857105-857136|NZ_CP020714.1_1361193-1361162|NZ_CP020714.1_2516205-2516174|NZ_CP020714.1_729579-729548|NZ_CP020714.1_2712602-2712571	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA,NA|42aa|down_1|NZ_CP020714.1_761999_762125_-	NA|189aa|up_9|NZ_CP020714.1_751085_751652_-	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|343aa|up_8|NZ_CP020714.1_751654_752683_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|495aa|up_7|NZ_CP020714.1_752675_754160_-	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|730aa|up_6|NZ_CP020714.1_754138_756328_-	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|224aa|up_5|NZ_CP020714.1_756320_756992_-	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|88aa|up_4|NZ_CP020714.1_756993_757257_-	COG1828, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]	NA|235aa|up_3|NZ_CP020714.1_757256_757961_-	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed	NA|375aa|up_2|NZ_CP020714.1_757964_759089_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|161aa|up_1|NZ_CP020714.1_759075_759558_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|287aa|up_0|NZ_CP020714.1_759758_760619_+	PRK14175, PRK14175, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|106aa|down_0|NZ_CP020714.1_761541_761859_+	pfam16403, DUF5011, Domain of unknown function (DUF5011)	NA|42aa|down_1|NZ_CP020714.1_761999_762125_-	NA	NA|367aa|down_2|NZ_CP020714.1_762429_763530_+	TIGR01432, AA3-600_quinol_oxidase_subunit_II, cytochrome aa3 quinol oxidase, subunit II	NA|663aa|down_3|NZ_CP020714.1_763529_765518_+	TIGR02882, cytochrome_aa3_quinol_oxidase_subunit_I, cytochrome aa3 quinol oxidase, subunit I	NA|202aa|down_4|NZ_CP020714.1_765507_766113_+	TIGR02897, AA3-600_quinol_oxidase_subunit_III, cytochrome aa3 quinol oxidase, subunit III	NA|97aa|down_5|NZ_CP020714.1_766109_766400_+	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]	NA|398aa|down_6|NZ_CP020714.1_766936_768130_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|406aa|down_7|NZ_CP020714.1_768580_769798_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|157aa|down_8|NZ_CP020714.1_769845_770316_+	pfam10804, DUF2538, Protein of unknown function (DUF2538)	NA|145aa|down_9|NZ_CP020714.1_770470_770905_+	COG2153, ElaA, Predicted acyltransferase [General function prediction only]
GCF_002850415.1_ASM285041v1	NZ_CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	3	877318-877396	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,csa3	Orphan	TATTGTAAGCTGACTTTCCGCCA	23	1	1	877341-877373	NZ_CP020714.1_2347003-2346971	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA,NA	NA|130aa|up_9|NZ_CP020714.1_859933_860323_-	PRK13673, PRK13673, hypothetical protein; Provisional	NA|301aa|up_8|NZ_CP020714.1_861143_862046_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_7|NZ_CP020714.1_862211_865865_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_6|NZ_CP020714.1_865865_869342_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_5|NZ_CP020714.1_869501_870077_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_4|NZ_CP020714.1_870092_870617_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_3|NZ_CP020714.1_870621_871197_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|402aa|up_2|NZ_CP020714.1_873202_874408_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP020714.1_874397_875777_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP020714.1_876018_876948_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP020714.1_877536_878781_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP020714.1_878889_880080_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP020714.1_880388_881516_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP020714.1_881876_882254_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP020714.1_882668_883262_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP020714.1_883325_883709_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP020714.1_883839_886245_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP020714.1_886237_886666_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|NZ_CP020714.1_886677_887007_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP020714.1_886999_888496_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_002850415.1_ASM285041v1	NZ_CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	4	1511674-1511758	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,csa3	Orphan	CCCACCCCAACTTGCATGGTCTGTAGAA	28	1	1	1511702-1511730	NZ_CP020714.1_2516186-2516214	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA|38aa|up_4|NZ_CP020714.1_1507096_1507210_+,NA	NA|165aa|up_9|NZ_CP020714.1_1502113_1502608_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_8|NZ_CP020714.1_1502730_1503678_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_7|NZ_CP020714.1_1503765_1504968_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_6|NZ_CP020714.1_1505213_1505714_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_5|NZ_CP020714.1_1505854_1506973_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|38aa|up_4|NZ_CP020714.1_1507096_1507210_+	NA	NA|352aa|up_3|NZ_CP020714.1_1507288_1508344_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_2|NZ_CP020714.1_1508518_1509208_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|up_1|NZ_CP020714.1_1509653_1510067_-	pfam00582, Usp, Universal stress protein family	NA|433aa|up_0|NZ_CP020714.1_1510271_1511570_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_0|NZ_CP020714.1_1512023_1512965_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|410aa|down_1|NZ_CP020714.1_1516631_1517861_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_2|NZ_CP020714.1_1518055_1518913_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_3|NZ_CP020714.1_1518912_1519857_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_4|NZ_CP020714.1_1520125_1521094_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_5|NZ_CP020714.1_1521115_1522873_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_6|NZ_CP020714.1_1525197_1526559_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|374aa|down_7|NZ_CP020714.1_1526906_1528028_+	PRK14035, PRK14035, citrate synthase; Provisional	NA|423aa|down_8|NZ_CP020714.1_1528076_1529345_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|235aa|down_9|NZ_CP020714.1_1529734_1530439_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_002850415.1_ASM285041v1	NZ_CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	5	1834571-1834655	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,csa3	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	3	1834597-1834629|1834597-1834629|1834597-1834629	NZ_CP020714.1_234477-234509|NZ_CP020714.1_322700-322668|NZ_CP020714.1_761139-761171	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA|39aa|up_2|NZ_CP020714.1_1832496_1832613_+,NA|68aa|down_0|NZ_CP020714.1_1834716_1834920_-	NA|206aa|up_9|NZ_CP020714.1_1823645_1824263_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|266aa|up_8|NZ_CP020714.1_1825871_1826669_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|NZ_CP020714.1_1827029_1827674_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|NZ_CP020714.1_1828370_1830521_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_5|NZ_CP020714.1_1830666_1831026_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NZ_CP020714.1_1831215_1831932_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NZ_CP020714.1_1831931_1832405_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NZ_CP020714.1_1832496_1832613_+	NA	NA|215aa|up_1|NZ_CP020714.1_1832757_1833402_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NZ_CP020714.1_1833517_1834384_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|68aa|down_0|NZ_CP020714.1_1834716_1834920_-	NA	NA|171aa|down_1|NZ_CP020714.1_1835098_1835611_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NZ_CP020714.1_1835952_1836693_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|325aa|down_3|NZ_CP020714.1_1836706_1837681_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NZ_CP020714.1_1837677_1838439_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NZ_CP020714.1_1838451_1839483_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NZ_CP020714.1_1839699_1840059_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NZ_CP020714.1_1840232_1841258_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NZ_CP020714.1_1841643_1842894_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|215aa|down_9|NZ_CP020714.1_1850527_1851172_+	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]
GCF_002850415.1_ASM285041v1	NZ_CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	6	1943070-1943160	6	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,WYL,csa3	Unclear	GGGCCCACACCCCAACTTGCATTGCCTGTAGAA	33	1	22	1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127|1943103-1943127	NZ_CP020714.1_744803-744779|NZ_CP020714.1_234392-234368|NZ_CP020714.1_322785-322809|NZ_CP020714.1_652596-652620|NZ_CP020714.1_1136865-1136889|NZ_CP020714.1_1834570-1834546|NZ_CP020714.1_1974847-1974871|NZ_CP020714.1_1980281-1980305|NZ_CP020714.1_2061275-2061251|NZ_CP020714.1_2356308-2356284|NZ_CP020714.1_2516186-2516210|NZ_CP020714.1_2635029-2635053|NZ_CP020714.1_42-18|NZ_CP020714.1_238802-238826|NZ_CP020714.1_532373-532397|NZ_CP020714.1_729560-729584|NZ_CP020714.1_857124-857100|NZ_CP020714.1_1361174-1361198|NZ_CP020714.1_1509428-1509452|NZ_CP020714.1_1599228-1599204|NZ_CP020714.1_2546461-2546437|NZ_CP020714.1_2712583-2712607	NA	1	1	Unclear	cas3,DEDDh,DinG,WYL,csa3	NA|49aa|up_3|NZ_CP020714.1_1937340_1937487_+,NA|52aa|down_0|NZ_CP020714.1_1943454_1943610_+	NA|510aa|up_9|NZ_CP020714.1_1928766_1930296_-	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component	NA|312aa|up_8|NZ_CP020714.1_1930657_1931593_+	cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases	NA|156aa|up_7|NZ_CP020714.1_1934011_1934479_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|93aa|up_6|NZ_CP020714.1_1934501_1934780_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|420aa|up_5|NZ_CP020714.1_1935006_1936266_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|352aa|up_4|NZ_CP020714.1_1936283_1937339_+	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family	NA|49aa|up_3|NZ_CP020714.1_1937340_1937487_+	NA	NA|348aa|up_2|NZ_CP020714.1_1937510_1938554_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|239aa|up_1|NZ_CP020714.1_1939081_1939798_+	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|342aa|up_0|NZ_CP020714.1_1939790_1940816_+	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|52aa|down_0|NZ_CP020714.1_1943454_1943610_+	NA	NA|324aa|down_1|NZ_CP020714.1_1943648_1944620_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|319aa|down_2|NZ_CP020714.1_1944606_1945563_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|343aa|down_3|NZ_CP020714.1_1946438_1947467_+	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|105aa|down_4|NZ_CP020714.1_1947783_1948098_-	COG4357, COG4357, Zinc finger domain containing protein (CHY type) [Function unknown]	NA|308aa|down_5|NZ_CP020714.1_1948115_1949039_-	PRK13906, murB, UDP-N-acetylmuramate dehydrogenase	NA|173aa|down_6|NZ_CP020714.1_1949165_1949684_-	pfam04229, GrpB, GrpB protein	NA|293aa|down_7|NZ_CP020714.1_1949803_1950682_+	NF033194, lipo_EMYY, EMYY motif lipoprotein	NA|107aa|down_8|NZ_CP020714.1_1950835_1951156_+	pfam11009, DUF2847, Protein of unknown function (DUF2847)	NA|375aa|down_9|NZ_CP020714.1_1951580_1952705_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]
GCF_002850415.1_ASM285041v1	NZ_CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	7	2516101-2516185	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,csa3	Orphan	CACCCCAACTTACATTGTCTGTAGAA	26	1	3	2516127-2516159|2516127-2516159|2516127-2516159	NZ_CP020714.1_234509-234477|NZ_CP020714.1_322668-322700|NZ_CP020714.1_761171-761139	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA|249aa|up_9|NZ_CP020714.1_2505649_2506396_-,NA|127aa|down_1|NZ_CP020714.1_2517141_2517522_-,NA|70aa|down_5|NZ_CP020714.1_2520824_2521034_-,NA|49aa|down_6|NZ_CP020714.1_2521026_2521173_-	NA|249aa|up_9|NZ_CP020714.1_2505649_2506396_-	NA	NA|526aa|up_8|NZ_CP020714.1_2506590_2508168_+	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]	NA|152aa|up_7|NZ_CP020714.1_2508335_2508791_-	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|86aa|up_6|NZ_CP020714.1_2509150_2509408_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|89aa|up_5|NZ_CP020714.1_2509407_2509674_+	COG4115, COG4115, Uncharacterized protein conserved in bacteria [Function unknown]	NA|359aa|up_4|NZ_CP020714.1_2510029_2511106_+	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|221aa|up_3|NZ_CP020714.1_2511353_2512016_+	COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|259aa|up_2|NZ_CP020714.1_2512008_2512785_+	COG0390, COG0390, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|396aa|up_1|NZ_CP020714.1_2513180_2514368_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|451aa|up_0|NZ_CP020714.1_2514429_2515782_-	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|214aa|down_0|NZ_CP020714.1_2516503_2517145_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|down_1|NZ_CP020714.1_2517141_2517522_-	NA	NA|567aa|down_2|NZ_CP020714.1_2517851_2519552_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|down_3|NZ_CP020714.1_2519565_2520435_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|107aa|down_4|NZ_CP020714.1_2520501_2520822_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|70aa|down_5|NZ_CP020714.1_2520824_2521034_-	NA	NA|49aa|down_6|NZ_CP020714.1_2521026_2521173_-	NA	NA|106aa|down_7|NZ_CP020714.1_2521169_2521487_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|down_8|NZ_CP020714.1_2521491_2521710_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_9|NZ_CP020714.1_2521882_2522557_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain
GCF_002850415.1_ASM285041v1	NZ_CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	8	2521728-2521816	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,csa3	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA|127aa|up_7|NZ_CP020714.1_2517141_2517522_-,NA|70aa|up_3|NZ_CP020714.1_2520824_2521034_-,NA|49aa|up_2|NZ_CP020714.1_2521026_2521173_-,NA	NA|451aa|up_9|NZ_CP020714.1_2514429_2515782_-	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|214aa|up_8|NZ_CP020714.1_2516503_2517145_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_7|NZ_CP020714.1_2517141_2517522_-	NA	NA|567aa|up_6|NZ_CP020714.1_2517851_2519552_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|up_5|NZ_CP020714.1_2519565_2520435_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|107aa|up_4|NZ_CP020714.1_2520501_2520822_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|70aa|up_3|NZ_CP020714.1_2520824_2521034_-	NA	NA|49aa|up_2|NZ_CP020714.1_2521026_2521173_-	NA	NA|106aa|up_1|NZ_CP020714.1_2521169_2521487_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NZ_CP020714.1_2521491_2521710_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NZ_CP020714.1_2521882_2522557_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NZ_CP020714.1_2522570_2523743_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|NZ_CP020714.1_2523811_2525428_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NZ_CP020714.1_2525503_2525788_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NZ_CP020714.1_2525962_2526706_+	pfam02517, Abi, CAAX protease self-immunity	NA|394aa|down_5|NZ_CP020714.1_2526729_2527911_-	pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)	NA|199aa|down_6|NZ_CP020714.1_2528136_2528733_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|NZ_CP020714.1_2529093_2529879_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|NZ_CP020714.1_2530475_2530610_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_9|NZ_CP020714.1_2530845_2531409_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
GCF_002850415.1_ASM285041v1	NZ_CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	9	2612455-2612540	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,WYL,csa3	Type I-A	ACTAATGATACGCAAACATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA|31aa|up_5|NZ_CP020714.1_2597120_2597213_+,NA|53aa|down_7|NZ_CP020714.1_2623502_2623661_-,NA|35aa|down_8|NZ_CP020714.1_2624340_2624445_+,NA|364aa|down_9|NZ_CP020714.1_2624886_2625978_-	NA|311aa|up_9|NZ_CP020714.1_2593959_2594892_+	TIGR01136, Cysteine_synthase, cysteine synthase	NA|268aa|up_8|NZ_CP020714.1_2595107_2595911_+	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|122aa|up_7|NZ_CP020714.1_2595888_2596254_+	cd00534, DHNA_DHNTPE, Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively	NA|159aa|up_6|NZ_CP020714.1_2596250_2596727_+	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|31aa|up_5|NZ_CP020714.1_2597120_2597213_+	NA	NA|496aa|up_4|NZ_CP020714.1_2597265_2598753_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|303aa|up_3|NZ_CP020714.1_2600848_2601757_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP020714.1_2601945_2602755_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP020714.1_2602756_2603689_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP020714.1_2603715_2605071_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP020714.1_2613162_2614269_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP020714.1_2614268_2614703_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP020714.1_2614714_2616847_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|down_3|NZ_CP020714.1_2616881_2618420_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|down_4|NZ_CP020714.1_2619100_2620906_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_5|NZ_CP020714.1_2621137_2621920_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_6|NZ_CP020714.1_2621987_2622845_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_7|NZ_CP020714.1_2623502_2623661_-	NA	NA|35aa|down_8|NZ_CP020714.1_2624340_2624445_+	NA	NA|364aa|down_9|NZ_CP020714.1_2624886_2625978_-	NA
GCF_002850415.1_ASM285041v1	NZ_CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	10	2624780-2624870	10	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,WYL,csa3	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA|53aa|up_1|NZ_CP020714.1_2623502_2623661_-,NA|35aa|up_0|NZ_CP020714.1_2624340_2624445_+,NA|364aa|down_0|NZ_CP020714.1_2624886_2625978_-,NA|77aa|down_5|NZ_CP020714.1_2629767_2629998_+	NA|2499aa|up_9|NZ_CP020714.1_2605347_2612844_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_8|NZ_CP020714.1_2613162_2614269_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP020714.1_2614268_2614703_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP020714.1_2614714_2616847_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP020714.1_2616881_2618420_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP020714.1_2619100_2620906_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP020714.1_2621137_2621920_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP020714.1_2621987_2622845_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP020714.1_2623502_2623661_-	NA	NA|35aa|up_0|NZ_CP020714.1_2624340_2624445_+	NA	NA|364aa|down_0|NZ_CP020714.1_2624886_2625978_-	NA	NA|327aa|down_1|NZ_CP020714.1_2626243_2627224_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP020714.1_2627225_2627546_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP020714.1_2627697_2628363_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP020714.1_2628798_2629737_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP020714.1_2629767_2629998_+	NA	NA|458aa|down_6|NZ_CP020714.1_2630669_2632043_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP020714.1_2632499_2632913_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP020714.1_2633112_2633556_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP020714.1_2633676_2634387_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_002850415.1_ASM285041v1	NZ_CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	11	2671110-2671199	11	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,csa3	Orphan	AAAAGAAATTCTACAGGCAATGCAAGTTGGGG	32	1	1	2671142-2671167	NZ_CP020714.1_744770-744795	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA|256aa|up_8|NZ_CP020714.1_2660567_2661335_-,NA|129aa|down_1|NZ_CP020714.1_2672307_2672694_+,NA|92aa|down_6|NZ_CP020714.1_2676675_2676951_-	NA|392aa|up_9|NZ_CP020714.1_2659386_2660562_-	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism]	NA|256aa|up_8|NZ_CP020714.1_2660567_2661335_-	NA	NA|512aa|up_7|NZ_CP020714.1_2661491_2663027_-	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]	NA|515aa|up_6|NZ_CP020714.1_2663077_2664622_-	pfam09822, ABC_transp_aux, ABC-type uncharacterized transport system	NA|319aa|up_5|NZ_CP020714.1_2664850_2665807_+	COG3221, PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|258aa|up_4|NZ_CP020714.1_2666020_2666794_+	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|267aa|up_3|NZ_CP020714.1_2666795_2667596_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|272aa|up_2|NZ_CP020714.1_2667592_2668408_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|393aa|up_1|NZ_CP020714.1_2668538_2669717_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|329aa|up_0|NZ_CP020714.1_2669817_2670804_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|NZ_CP020714.1_2671332_2672091_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|NZ_CP020714.1_2672307_2672694_+	NA	NA|234aa|down_2|NZ_CP020714.1_2672708_2673410_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|NZ_CP020714.1_2673406_2674450_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|NZ_CP020714.1_2674439_2675069_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|NZ_CP020714.1_2675180_2676398_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|NZ_CP020714.1_2676675_2676951_-	NA	NA|155aa|down_7|NZ_CP020714.1_2676957_2677422_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|NZ_CP020714.1_2677568_2677769_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|NZ_CP020714.1_2677771_2679028_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
