assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002850675.4_ASM285067v5	NZ_CP025950	Escherichia coli strain SCEC020023 chromosome, complete genome	1	1054200-1054838	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,10,10	10	Orphan	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|919aa|up_9|NZ_CP025950.3_1040793_1043550_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP025950.3_1043606_1044908_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP025950.3_1044955_1047190_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP025950.3_1047267_1047516_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP025950.3_1047515_1047851_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP025950.3_1047922_1048714_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP025950.3_1048941_1050579_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP025950.3_1050665_1051964_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP025950.3_1052023_1052896_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP025950.3_1053189_1053861_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP025950.3_1055475_1056954_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP025950.3_1056980_1058258_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP025950.3_1058576_1059362_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP025950.3_1059431_1060886_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP025950.3_1060907_1062317_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP025950.3_1062294_1063074_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP025950.3_1063070_1063931_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|450aa|down_7|NZ_CP025950.3_1064030_1065379_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|192aa|down_8|NZ_CP025950.3_1065513_1066089_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP025950.3_1066105_1066366_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_002850675.4_ASM285067v5	NZ_CP025950	Escherichia coli strain SCEC020023 chromosome, complete genome	2	1083325-1083597	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAA,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,26,29	0	0	NA	NA	I-E:I-E:I-E	3,3,4	4	TypeI-E	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|51aa|up_9|NZ_CP025950.3_1072970_1073123_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_8|NZ_CP025950.3_1073199_1074312_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3|900aa|up_7|NZ_CP025950.3_1074666_1077366_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP025950.3_1077463_1079026_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP025950.3_1079022_1079559_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP025950.3_1079573_1080629_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP025950.3_1080639_1081386_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP025950.3_1081367_1082018_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP025950.3_1082014_1082938_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP025950.3_1082934_1083228_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP025950.3_1083617_1084655_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP025950.3_1084906_1085815_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP025950.3_1085816_1087244_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP025950.3_1087243_1087849_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP025950.3_1087898_1088222_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP025950.3_1088415_1088727_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP025950.3_1088745_1089456_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP025950.3_1089455_1089935_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP025950.3_1089931_1090981_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP025950.3_1090961_1091723_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002850675.4_ASM285067v5	NZ_CP025950	Escherichia coli strain SCEC020023 chromosome, complete genome	3	2305005-2305128	3	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|30aa|down_6|NZ_CP025950.3_2314024_2314114_+	NA|471aa|up_9|NZ_CP025950.3_2294459_2295872_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP025950.3_2296428_2296638_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP025950.3_2297092_2297719_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP025950.3_2297739_2299842_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP025950.3_2299854_2300493_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP025950.3_2300556_2301225_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP025950.3_2301221_2302007_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP025950.3_2302010_2302823_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP025950.3_2302834_2304439_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP025950.3_2304564_2304870_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|458aa|down_0|NZ_CP025950.3_2306739_2308113_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_1|NZ_CP025950.3_2308327_2308969_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_2|NZ_CP025950.3_2309008_2310157_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_3|NZ_CP025950.3_2310447_2311659_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_4|NZ_CP025950.3_2311771_2312704_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_5|NZ_CP025950.3_2312700_2313726_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_6|NZ_CP025950.3_2314024_2314114_+	NA	NA|390aa|down_7|NZ_CP025950.3_2314279_2315449_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|NZ_CP025950.3_2315683_2316265_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_9|NZ_CP025950.3_2316392_2317208_-	pfam00877, NLPC_P60, NlpC/P60 family
GCF_002850675.4_ASM285067v5	NZ_CP025950	Escherichia coli strain SCEC020023 chromosome, complete genome	4	2971614-2971705	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|70aa|up_9|NZ_CP025950.3_2960690_2960900_-,NA	NA|70aa|up_9|NZ_CP025950.3_2960690_2960900_-	NA	NA|1321aa|up_8|NZ_CP025950.3_2960954_2964917_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP025950.3_2964956_2965595_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP025950.3_2965882_2966974_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP025950.3_2966973_2967666_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP025950.3_2967677_2968064_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP025950.3_2968071_2968872_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP025950.3_2968881_2969472_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP025950.3_2969482_2969977_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP025950.3_2969997_2971326_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP025950.3_2972128_2972725_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP025950.3_2972745_2972973_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP025950.3_2973010_2974252_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP025950.3_2974544_2975801_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP025950.3_2976061_2976982_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP025950.3_2976981_2977287_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP025950.3_2977438_2978038_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP025950.3_2978034_2980581_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP025950.3_2980580_2981753_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP025950.3_2981882_2982575_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002850675.4_ASM285067v5	NZ_CP025950	Escherichia coli strain SCEC020023 chromosome, complete genome	5	3233128-3233272	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|330aa|up_9|NZ_CP025950.3_3221026_3222016_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP025950.3_3222412_3223321_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP025950.3_3223512_3225534_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP025950.3_3226112_3226790_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP025950.3_3226782_3227538_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP025950.3_3227524_3228679_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP025950.3_3228675_3229716_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP025950.3_3229802_3231092_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP025950.3_3231150_3231627_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP025950.3_3231778_3233062_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP025950.3_3233295_3235557_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP025950.3_3235739_3237173_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP025950.3_3237248_3238301_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP025950.3_3238484_3239438_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP025950.3_3239478_3240474_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP025950.3_3240628_3241447_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP025950.3_3241447_3242506_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP025950.3_3242508_3243198_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP025950.3_3243197_3243971_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP025950.3_3244137_3244287_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_002850675.4_ASM285067v5	NZ_CP025950	Escherichia coli strain SCEC020023 chromosome, complete genome	6	3481803-3481899	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|231aa|up_9|NZ_CP025950.3_3473598_3474291_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP025950.3_3474510_3475053_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP025950.3_3475523_3476390_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP025950.3_3476391_3476604_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP025950.3_3476711_3477233_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP025950.3_3477268_3478654_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP025950.3_3478827_3479322_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP025950.3_3479324_3480047_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP025950.3_3480164_3480674_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP025950.3_3480670_3481738_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP025950.3_3481932_3482826_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP025950.3_3482822_3483638_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP025950.3_3483648_3484908_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP025950.3_3484917_3486585_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP025950.3_3486901_3487951_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP025950.3_3487972_3489208_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP025950.3_3489218_3490004_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP025950.3_3490231_3491377_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP025950.3_3491398_3492700_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP025950.3_3492756_3494118_-	PRK08044, PRK08044, allantoinase AllB
GCF_002850675.4_ASM285067v5	NZ_CP025950	Escherichia coli strain SCEC020023 chromosome, complete genome	7	3621944-3622088	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|28aa|down_2|NZ_CP025950.3_3624133_3624217_-	NA|357aa|up_9|NZ_CP025950.3_3607082_3608153_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP025950.3_3608245_3608827_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP025950.3_3608831_3610649_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP025950.3_3610804_3612178_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP025950.3_3612253_3613573_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP025950.3_3613979_3615275_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP025950.3_3615332_3616022_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP025950.3_3616211_3617414_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP025950.3_3617410_3620557_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP025950.3_3620682_3621867_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP025950.3_3622111_3623020_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP025950.3_3623144_3624056_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP025950.3_3624133_3624217_-	NA	NA|95aa|down_3|NZ_CP025950.3_3624702_3624987_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP025950.3_3625058_3625736_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP025950.3_3625993_3626185_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP025950.3_3626234_3626759_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP025950.3_3626941_3627400_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP025950.3_3627519_3628329_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP025950.3_3628345_3629461_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_002850675.4_ASM285067v5	NZ_CP025950	Escherichia coli strain SCEC020023 chromosome, complete genome	8	4095577-4095712	3	PILER-CR	no		cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|126aa|up_9|NZ_CP025950.3_4086285_4086663_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP025950.3_4086669_4087512_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP025950.3_4087589_4088069_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP025950.3_4088260_4090123_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP025950.3_4090115_4090646_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP025950.3_4090753_4092085_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP025950.3_4092141_4092429_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP025950.3_4092425_4093712_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP025950.3_4093762_4094704_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP025950.3_4094718_4095489_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP025950.3_4095961_4097476_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP025950.3_4097506_4098649_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP025950.3_4098766_4099984_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|262aa|down_3|NZ_CP025950.3_4101719_4102505_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_4|NZ_CP025950.3_4102510_4103101_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_5|NZ_CP025950.3_4103219_4103615_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1073aa|down_6|NZ_CP025950.3_4103875_4107094_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_7|NZ_CP025950.3_4107111_4108260_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_8|NZ_CP025950.3_4108715_4109537_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_9|NZ_CP025950.3_4109703_4110618_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional
GCF_002850675.4_ASM285067v5	NZ_CP025950	Escherichia coli strain SCEC020023 chromosome, complete genome	9	4271278-4271427	8	CRISPRCasFinder	no	RT	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|59aa|up_9|NZ_CP025950.3_4260841_4261018_-,NA|62aa|up_8|NZ_CP025950.3_4261205_4261391_+,NA|213aa|up_6|NZ_CP025950.3_4262095_4262734_-,NA	NA|59aa|up_9|NZ_CP025950.3_4260841_4261018_-	NA	NA|62aa|up_8|NZ_CP025950.3_4261205_4261391_+	NA	NA|77aa|up_7|NZ_CP025950.3_4261487_4261718_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|213aa|up_6|NZ_CP025950.3_4262095_4262734_-	NA	NA|421aa|up_5|NZ_CP025950.3_4262763_4264026_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_4|NZ_CP025950.3_4264470_4265490_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP025950.3_4265617_4267120_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP025950.3_4267280_4268363_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP025950.3_4268362_4269463_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP025950.3_4269729_4271241_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP025950.3_4271594_4272038_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP025950.3_4272037_4274893_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP025950.3_4274944_4276132_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP025950.3_4276324_4276828_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP025950.3_4276873_4277290_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP025950.3_4277451_4278456_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP025950.3_4280378_4280831_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_7|NZ_CP025950.3_4280975_4281569_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_8|NZ_CP025950.3_4281639_4282353_+	PRK12742, PRK12742, SDR family oxidoreductase	NA|132aa|down_9|NZ_CP025950.3_4282483_4282879_+	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
GCF_002850675.4_ASM285067v5	NZ_CP025944	Escherichia coli strain SCEC020023 plasmid pOXA10_020023, complete sequence	1	9148-9282	1	CRISPRCasFinder	no	RT	RT	Unclear	AAAACTACAGATAAACTACAAAAAACGT	28	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|287aa|up_4|NZ_CP025944.3_0_861_+,NA|129aa|down_0|NZ_CP025944.3_9346_9733_+,NA|90aa|down_7|NZ_CP025944.3_19459_19729_+,NA|63aa|down_9|NZ_CP025944.3_21051_21240_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|287aa|up_4|NZ_CP025944.3_0_861_+	NA	NA|402aa|up_3|NZ_CP025944.3_1260_2466_+	pfam18607, HTH_54, ParA helix turn helix domain	NA|322aa|up_2|NZ_CP025944.3_2462_3428_+	pfam08775, ParB, ParB family	RT|503aa|up_1|NZ_CP025944.3_6211_7720_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|64aa|up_0|NZ_CP025944.3_8667_8859_+	pfam01815, Rop, Rop protein	NA|129aa|down_0|NZ_CP025944.3_9346_9733_+	NA	NA|323aa|down_1|NZ_CP025944.3_9872_10841_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	RT|496aa|down_2|NZ_CP025944.3_13188_14676_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|144aa|down_3|NZ_CP025944.3_15081_15513_+	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|424aa|down_4|NZ_CP025944.3_15512_16784_+	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC	NA|325aa|down_5|NZ_CP025944.3_16865_17840_-	pfam08775, ParB, ParB family	NA|402aa|down_6|NZ_CP025944.3_17839_19045_-	pfam18607, HTH_54, ParA helix turn helix domain	NA|90aa|down_7|NZ_CP025944.3_19459_19729_+	NA	NA|276aa|down_8|NZ_CP025944.3_20085_20913_-	pfam01051, Rep_3, Initiator Replication protein	NA|63aa|down_9|NZ_CP025944.3_21051_21240_+	NA
