assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002850695.3_ASM285069v3	NZ_CP028568	Aeromonas hydrophila subsp. hydrophila strain WCHAH045096 chromosome, complete genome	1	67465-67567	1	CRISPRCasFinder	no		RT,cas3,DEDDh,DinG,WYL,csa3	Orphan	GGGCTGTTTTCCAAGTCCAGAGGGGCG	27	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,DinG,WYL,csa3,cas14j,PD-DExK,c2c9_V-U4	NA|54aa|up_9|NZ_CP028568.2_56643_56805_-,NA|147aa|down_9|NZ_CP028568.2_81076_81517_-	NA|54aa|up_9|NZ_CP028568.2_56643_56805_-	NA	NA|310aa|up_8|NZ_CP028568.2_56789_57719_-	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional	NA|325aa|up_7|NZ_CP028568.2_57780_58755_+	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold	NA|338aa|up_6|NZ_CP028568.2_58733_59747_-	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed	NA|145aa|up_5|NZ_CP028568.2_59938_60373_-	PRK15118, PRK15118, universal stress protein UspA	NA|396aa|up_4|NZ_CP028568.2_60838_62026_+	PRK13656, PRK13656, enoyl-[acyl-carrier-protein] reductase FabV	NA|597aa|up_3|NZ_CP028568.2_62032_63823_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|175aa|up_2|NZ_CP028568.2_64032_64557_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|396aa|up_1|NZ_CP028568.2_64637_65825_+	COG2081, COG2081, Predicted flavoproteins [General function prediction only]	NA|407aa|up_0|NZ_CP028568.2_66011_67232_-	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|316aa|down_0|NZ_CP028568.2_68751_69699_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|92aa|down_1|NZ_CP028568.2_69839_70115_+	PRK15209, PRK15209, long polar fimbrial protein LpfA; Provisional	NA|234aa|down_2|NZ_CP028568.2_70178_70880_+	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|827aa|down_3|NZ_CP028568.2_70973_73454_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|366aa|down_4|NZ_CP028568.2_73473_74571_+	pfam00419, Fimbrial, Fimbrial protein	NA|174aa|down_5|NZ_CP028568.2_75357_75879_+	cd17535, REC_NarL-like, phosphoacceptor receiver (REC) domain of NarL (Nitrate/Nitrite response regulator L) family response regulators	NA|379aa|down_6|NZ_CP028568.2_76081_77218_+	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|81aa|down_7|NZ_CP028568.2_77186_77429_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|1153aa|down_8|NZ_CP028568.2_77582_81041_+	PRK09959, PRK09959, acid-sensing system histidine kinase EvgS	NA|147aa|down_9|NZ_CP028568.2_81076_81517_-	NA
GCF_002850695.3_ASM285069v3	NZ_CP028568	Aeromonas hydrophila subsp. hydrophila strain WCHAH045096 chromosome, complete genome	2	740111-740215	2	CRISPRCasFinder	no		RT,cas3,DEDDh,DinG,WYL,csa3	Orphan	GGTGACATGAGTCGTTTTCAGGCCATTGC	29	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,DinG,WYL,csa3,cas14j,PD-DExK,c2c9_V-U4	NA|76aa|up_5|NZ_CP028568.2_736328_736556_+,NA|72aa|up_2|NZ_CP028568.2_737701_737917_+,NA|698aa|down_7|NZ_CP028568.2_749141_751235_-,NA|155aa|down_8|NZ_CP028568.2_751295_751760_-	NA|148aa|up_9|NZ_CP028568.2_733618_734062_-	cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|335aa|up_8|NZ_CP028568.2_734191_735196_-	cd05288, PGDH, Prostaglandin dehydrogenases	NA|159aa|up_7|NZ_CP028568.2_735278_735755_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|up_6|NZ_CP028568.2_735798_736293_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|76aa|up_5|NZ_CP028568.2_736328_736556_+	NA	NA|106aa|up_4|NZ_CP028568.2_736701_737019_+	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown]	NA|159aa|up_3|NZ_CP028568.2_737107_737584_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|72aa|up_2|NZ_CP028568.2_737701_737917_+	NA	NA|207aa|up_1|NZ_CP028568.2_737892_738513_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|414aa|up_0|NZ_CP028568.2_738678_739920_+	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters	NA|188aa|down_0|NZ_CP028568.2_741064_741628_-	pfam10973, DUF2799, Protein of unknown function (DUF2799)	NA|280aa|down_1|NZ_CP028568.2_741836_742676_+	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only]	NA|438aa|down_2|NZ_CP028568.2_742890_744204_+	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|239aa|down_3|NZ_CP028568.2_744204_744921_-	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein	NA|438aa|down_4|NZ_CP028568.2_745376_746690_+	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|542aa|down_5|NZ_CP028568.2_746711_748337_-	cd17624, REC_OmpR_PmrA-like, phosphoacceptor receiver (REC) domain of PmrA-like OmpR family response regulators	NA|242aa|down_6|NZ_CP028568.2_748446_749172_-	pfam11340, DUF3142, Protein of unknown function (DUF3142)	NA|698aa|down_7|NZ_CP028568.2_749141_751235_-	NA	NA|155aa|down_8|NZ_CP028568.2_751295_751760_-	NA	NA|718aa|down_9|NZ_CP028568.2_751802_753956_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
GCF_002850695.3_ASM285069v3	NZ_CP028568	Aeromonas hydrophila subsp. hydrophila strain WCHAH045096 chromosome, complete genome	3	1420416-1420497	3	CRISPRCasFinder	no		RT,cas3,DEDDh,DinG,WYL,csa3	Orphan	CGTGCCGTTTGTGAACAGGAGGC	23	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,DinG,WYL,csa3,cas14j,PD-DExK,c2c9_V-U4	NA|64aa|up_7|NZ_CP028568.2_1410829_1411021_+,NA	NA|352aa|up_9|NZ_CP028568.2_1408980_1410036_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|158aa|up_8|NZ_CP028568.2_1410037_1410511_-	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional	NA|64aa|up_7|NZ_CP028568.2_1410829_1411021_+	NA	NA|436aa|up_6|NZ_CP028568.2_1411566_1412874_+	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family	NA|517aa|up_5|NZ_CP028568.2_1412885_1414436_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|523aa|up_4|NZ_CP028568.2_1414453_1416022_+	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|231aa|up_3|NZ_CP028568.2_1416025_1416718_+	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|300aa|up_2|NZ_CP028568.2_1416815_1417715_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|269aa|up_1|NZ_CP028568.2_1417818_1418625_+	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|506aa|up_0|NZ_CP028568.2_1418687_1420205_-	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|559aa|down_0|NZ_CP028568.2_1420500_1422177_+	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]	NA|392aa|down_1|NZ_CP028568.2_1422263_1423439_+	cd01151, GCD, Glutaryl-CoA dehydrogenase	NA|385aa|down_2|NZ_CP028568.2_1423438_1424593_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|166aa|down_3|NZ_CP028568.2_1424633_1425131_+	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|230aa|down_4|NZ_CP028568.2_1425233_1425923_+	TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB	NA|432aa|down_5|NZ_CP028568.2_1425931_1427227_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|325aa|down_6|NZ_CP028568.2_1427603_1428578_+	TIGR02136, ptsS_2, phosphate binding protein	NA|269aa|down_7|NZ_CP028568.2_1428741_1429548_+	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase	NA|169aa|down_8|NZ_CP028568.2_1429535_1430042_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|301aa|down_9|NZ_CP028568.2_1430151_1431054_+	PRK13310, PRK13310, N-acetyl-D-glucosamine kinase; Provisional
GCF_002850695.3_ASM285069v3	NZ_CP028568	Aeromonas hydrophila subsp. hydrophila strain WCHAH045096 chromosome, complete genome	4	3998135-3998340	1,4	PILER-CR,CRISPRCasFinder	no		RT,cas3,DEDDh,DinG,WYL,csa3	Orphan	ACCATGATGGCCTGTAAAAAGGTGGGTTTGCCG,CATCAAGACCATGATGGCCTGTAAAAAGGTGGGTTTGCCG	33,40	0	0	NA	NA	NA:NA	2,1	2	Orphan	RT,cas3,DEDDh,DinG,WYL,csa3,cas14j,PD-DExK,c2c9_V-U4	NA,NA	NA|152aa|up_9|NZ_CP028568.2_3987739_3988195_+	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|447aa|up_8|NZ_CP028568.2_3988210_3989551_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|88aa|up_7|NZ_CP028568.2_3989678_3989942_+	pfam06196, DUF997, Protein of unknown function (DUF997)	NA|493aa|up_6|NZ_CP028568.2_3989931_3991410_+	PRK09442, panF, sodium/pantothenate symporter	NA|476aa|up_5|NZ_CP028568.2_3991487_3992915_+	TIGR01998, N-acetylglucosamine_and_glucose_PTS, PTS system, N-acetylglucosamine-specific IIBC component	NA|283aa|up_4|NZ_CP028568.2_3992917_3993766_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|339aa|up_3|NZ_CP028568.2_3993890_3994907_+	cd08252, AL_MDR, Arginate lyase and other MDR family members	NA|293aa|up_2|NZ_CP028568.2_3995432_3996311_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|326aa|up_1|NZ_CP028568.2_3996495_3997473_+	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases	NA|188aa|up_0|NZ_CP028568.2_3997546_3998110_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|183aa|down_0|NZ_CP028568.2_3998676_3999225_-	PRK10828, PRK10828, putative oxidoreductase; Provisional	NA|672aa|down_1|NZ_CP028568.2_3999331_4001347_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|615aa|down_2|NZ_CP028568.2_4001657_4003502_+	PRK10949, PRK10949, signal peptide peptidase SppA	NA|186aa|down_3|NZ_CP028568.2_4003566_4004124_-	cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|267aa|down_4|NZ_CP028568.2_4004130_4004931_-	pfam11207, DUF2989, Protein of unknown function (DUF2989)	NA|477aa|down_5|NZ_CP028568.2_4005128_4006559_+	PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed	NA|98aa|down_6|NZ_CP028568.2_4006599_4006893_+	COG3139, COG3139, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_7|NZ_CP028568.2_4007145_4008153_-	PRK09461, ansA, cytoplasmic asparaginase I; Provisional	NA|400aa|down_8|NZ_CP028568.2_4008667_4009867_+	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|624aa|down_9|NZ_CP028568.2_4010051_4011923_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
GCF_002850695.3_ASM285069v3	NZ_CP028568	Aeromonas hydrophila subsp. hydrophila strain WCHAH045096 chromosome, complete genome	5	4645702-4645783	5	CRISPRCasFinder	no		RT,cas3,DEDDh,DinG,WYL,csa3	Orphan	GGTAAAGATACCGGCTTACTTGCC	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DEDDh,DinG,WYL,csa3,cas14j,PD-DExK,c2c9_V-U4	NA|1223aa|up_7|NZ_CP028568.2_4637903_4641572_-,NA|142aa|up_6|NZ_CP028568.2_4641568_4641994_-,NA|154aa|up_0|NZ_CP028568.2_4645143_4645605_-,NA|216aa|down_5|NZ_CP028568.2_4652915_4653563_-,NA|198aa|down_6|NZ_CP028568.2_4653562_4654156_-	NA|302aa|up_9|NZ_CP028568.2_4635710_4636616_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|347aa|up_8|NZ_CP028568.2_4636658_4637699_-	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|1223aa|up_7|NZ_CP028568.2_4637903_4641572_-	NA	NA|142aa|up_6|NZ_CP028568.2_4641568_4641994_-	NA	NA|274aa|up_5|NZ_CP028568.2_4642031_4642853_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|187aa|up_4|NZ_CP028568.2_4642852_4643413_-	COG4967, PilV, Tfp pilus assembly protein PilV [Cell motility and secretion / Intracellular trafficking and secretion]	NA|161aa|up_3|NZ_CP028568.2_4643399_4643882_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|148aa|up_2|NZ_CP028568.2_4643936_4644380_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|224aa|up_1|NZ_CP028568.2_4644394_4645066_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|154aa|up_0|NZ_CP028568.2_4645143_4645605_-	NA	NA|570aa|down_0|NZ_CP028568.2_4647048_4648758_-	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	NA|333aa|down_1|NZ_CP028568.2_4648790_4649789_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|297aa|down_2|NZ_CP028568.2_4649884_4650775_-	TIGR03015, pepcterm_ATPase, putative secretion ATPase, PEP-CTERM locus subfamily	NA|558aa|down_3|NZ_CP028568.2_4650852_4652526_-	TIGR02519, related_to_type_II_protein_secretion_protein, pilus (MSHA type) biogenesis protein MshL	NA|109aa|down_4|NZ_CP028568.2_4652596_4652923_-	TIGR02500, Yop_proteins_translocation_protein_D, type III secretion apparatus protein, YscD/HrpQ family	NA|216aa|down_5|NZ_CP028568.2_4652915_4653563_-	NA	NA|198aa|down_6|NZ_CP028568.2_4653562_4654156_-	NA	NA|288aa|down_7|NZ_CP028568.2_4654155_4655019_-	COG4972, PilM, Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]	NA|316aa|down_8|NZ_CP028568.2_4655088_4656036_+	COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]	NA|653aa|down_9|NZ_CP028568.2_4656111_4658070_-	PRK11059, PRK11059, regulatory protein CsrD; Provisional
