The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	27282	70036	4109951	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077108685.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|64067_64385_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	107426	175248	4109951	transposase,tRNA	Bacillus_phage(22.22%)	58	NA	NA
WP_010929626.1|107426_108377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110551_111181_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114943_115960_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121121_122072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122169_123075_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123071_123905_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124741_125752_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125748_126138_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127031_128285_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128375_130076_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130502_131150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131148_132588_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132680_132983_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133010_133889_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135155_136106_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120810.1|136092_136236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815155.1|136524_138033_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|138779_142742_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|142794_143577_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|143664_144888_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|144871_145804_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|145809_146622_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_033446330.1|147934_148858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815135.1|149024_149807_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|150573_151554_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|151550_152279_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|152303_152735_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|152836_153712_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929651.1|153762_154983_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.2e-91
WP_010929652.1|155065_155527_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|155632_157030_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|157026_157704_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|157759_159070_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|159081_159780_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|159943_160720_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|160885_161908_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|162136_162772_+	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_010929658.1|162768_164331_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|164889_165840_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167283_168186_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168163_168793_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|169123_170506_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|170539_171169_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171217_172825_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172849_173533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173614_174091_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|174131_174311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|174297_175248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	215658	266517	4109951	protease,transposase,tRNA	uncultured_Caudovirales_phage(33.33%)	41	NA	NA
WP_033455792.1|215658_218454_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219047_221990_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222061_222781_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222819_223368_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223522_224422_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224446_225397_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013037.1|225383_225584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003818947.1|225615_226311_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226327_227740_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227852_229283_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229324_231238_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231556_232123_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232213_233215_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233329_234280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234366_235317_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235313_236264_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302767.1|236250_236424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929700.1|236362_237160_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238109_238520_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239541_240285_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240328_241372_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241542_243645_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245055_246012_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246030_246522_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246518_247874_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247874_248573_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248569_249271_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249523_250573_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250678_251620_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251616_253506_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253592_254231_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254373_255759_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255689_256226_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256377_257769_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257785_258766_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258901_259885_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259949_260849_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260955_262710_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262717_263842_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263855_264836_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265566_266517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	277133	303012	4109951	protease,transposase	Pithovirus(33.33%)	27	NA	NA
WP_005012067.1|277133_278084_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278360_278522_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278529_278670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279188_279638_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279647_280259_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|280417_281272_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281291_282674_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282738_283380_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283519_283978_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284002_284779_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284832_285969_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285965_286916_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287013_287640_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287662_288589_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288597_290184_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290180_291185_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291384_292245_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292276_293278_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293348_294158_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294235_296095_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296223_297426_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297539_298421_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299923_300484_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300543_301494_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299516.1|301480_301639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111735998.1|301685_301973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|302061_303012_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	390847	448356	4109951	transposase	Orpheovirus(14.29%)	52	NA	NA
WP_005012067.1|390847_391798_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219862.1|391784_391952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010927231.1|391934_392852_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392848_393097_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393093_394299_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394371_395367_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395389_396610_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396606_397251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398981_399791_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906040.1|400008_401049_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
WP_023994705.1|401017_401161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486049.1|401147_402131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402057_402759_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402807_403578_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003819219.1|403574_404816_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404920_406627_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406623_407520_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407560_409150_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409199_410192_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410260_410860_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879611.1|411320_412298_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412376_413327_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413415_414330_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414326_414986_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415075_415999_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416004_416460_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416456_417560_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417515_417788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417747_419367_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419363_420422_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420551_421046_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421138_422116_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422311_423517_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423513_425025_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425040_426354_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426544_426724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427133_427868_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430312_431263_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431394_431793_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432203_432674_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432762_433107_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433206_434607_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436395_436914_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437024_437780_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437975_439208_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439200_439986_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440052_441024_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441034_442012_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442137_443310_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443336_444365_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444430_445624_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447405_448356_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	590408	651600	4109951	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590408_591359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591834_592725_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592721_593543_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593743_594235_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594253_595327_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595373_596477_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596552_597173_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597193_597703_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597757_598009_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598072_599206_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599213_599600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599596_602116_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602544_602883_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602879_603386_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603447_604248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604358_605300_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605393_606929_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608608_610459_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610462_611296_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611295_612237_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|612488_613484_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613601_615890_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616196_617105_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617159_618125_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618199_619861_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|619857_620643_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620791_621742_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622440_622824_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622881_623484_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623501_623903_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624036_624930_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624926_625508_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626302_627037_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627077_628127_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628274_628853_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629239_630217_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630310_634705_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634905_635754_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635912_636725_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636780_637731_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219861.1|637717_637882_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|637829_638630_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638691_639075_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639086_640520_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640726_641056_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|641058_641727_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|641990_642911_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642957_643170_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643192_643615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|643631_644732_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644828_646346_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646421_647261_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647282_648164_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648245_649340_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649633_650584_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650658_651600_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	656918	703114	4109951	terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(17.39%)	51	NA	NA
WP_003814219.1|656918_657950_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|657990_658230_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658299_659889_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659888_660437_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660517_661090_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661108_662020_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662093_663062_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663184_664258_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664262_666083_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_033446132.1|667197_667533_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667666_668317_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668338_669757_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669826_670582_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670550_671309_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671319_672201_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672217_672925_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672927_673686_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673895_675638_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675630_676155_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676194_676989_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677156_678230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678328_679279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|679530_679743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679808_680420_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|680899_681220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|681212_681911_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|681925_682147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682164_683115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|683790_684240_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|684226_685504_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685506_686925_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686953_688009_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688014_688257_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688379_688982_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689410_690361_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|690378_691026_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|691035_691287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691349_691832_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691833_692034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692033_692429_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692425_692824_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692820_693243_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693250_693751_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694005_694524_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694533_694863_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694880_695171_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695196_697809_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697818_698178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698245_698779_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698775_699165_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699157_703114_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	720303	779355	4109951	transposase	Streptococcus_phage(66.67%)	48	NA	NA
WP_005012808.1|720303_721254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|723532_724621_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724623_726066_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726170_727316_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727347_728145_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728169_729729_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729725_732098_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732207_733311_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733310_734003_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734146_734848_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734832_735210_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735941_736892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|736878_737022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|737051_737924_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738264_738483_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738522_739902_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739943_741341_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741380_743033_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743036_743921_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743920_744862_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744940_746560_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746726_747542_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747609_748179_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748179_749130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749784_750882_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750915_752181_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929982.1|753531_754122_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754137_756582_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756701_757673_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757804_758329_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758288_759239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759459_761655_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761727_762135_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|762082_762271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|762257_763208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807452.1|763323_763767_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010925762.1|763829_764624_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807457.1|764789_765926_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_003807459.1|765996_767130_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807460.1|767279_767540_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807462.1|767573_767885_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_010929987.1|768309_769458_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_010929988.1|769572_770538_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929989.1|770806_771673_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929990.1|771803_773852_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929991.1|773869_775867_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929992.1|775901_777239_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_023853308.1|777501_779355_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	885795	953771	4109951	transposase	Bacillus_phage(33.33%)	59	NA	NA
WP_023994644.1|885795_886812_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887008_887992_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889590_890979_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891009_891999_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892109_893342_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893623_894424_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894446_896678_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897465_897912_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897933_898680_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898823_899801_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900434_901046_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901039_902257_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902397_903348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903344_904064_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904184_906344_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906434_906704_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906792_906999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|906997_907525_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907543_908323_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908490_909507_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909579_910071_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910081_911797_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912960_913911_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|913907_915758_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916138_916798_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|916885_917038_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|917146_917314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917325_918006_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918287_919004_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919018_920320_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922464_925353_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925576_926929_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926957_927479_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927475_928930_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928964_929213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929318_930194_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930219_931275_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931287_932079_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932111_933482_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|934534_934672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|934658_935609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935661_935883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936042_936255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936374_937493_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937589_937805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|937998_938250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938362_939313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939309_939693_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930067.1|939747_941565_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941711_942539_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942584_943565_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943561_943774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943770_944952_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945115_945850_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945851_948464_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948599_950513_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951128_951539_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951636_952722_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952820_953771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	976949	1047216	4109951	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|976949_977900_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977980_978892_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978952_980098_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980117_981032_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981103_981853_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981852_982782_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983025_984852_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984934_985576_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985765_986800_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988636_989701_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990498_991407_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992894_994169_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994322_994703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994710_995583_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995888_996269_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996479_997205_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997300_998251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998355_999405_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999542_1000559_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002067_1002640_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002699_1003431_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003482_1004400_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005207_1008387_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008383_1009766_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009835_1010087_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|1010232_1010883_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011033_1013148_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013223_1014075_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014071_1014698_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014694_1016449_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016741_1019447_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019459_1021121_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021133_1022924_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023145_1024321_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024363_1025314_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025412_1026153_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026347_1028384_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028401_1029412_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029529_1030723_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030752_1031526_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031522_1032713_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032738_1033677_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033673_1036022_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|1036176_1036884_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036921_1038055_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038147_1038300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038331_1038880_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038898_1039384_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039561_1040500_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040502_1040820_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040865_1041810_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043490_1044141_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044194_1044530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044526_1045387_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045403_1045685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045758_1046022_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046265_1047216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	1059434	1116917	4109951	holin,transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	46	NA	NA
WP_010931363.1|1059434_1060451_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061281_1062289_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062285_1063929_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|1063925_1064828_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064953_1065427_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065416_1066439_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066435_1067863_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068800_1069817_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070149_1071085_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071134_1073015_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073081_1073426_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073570_1074707_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074703_1075777_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075934_1077371_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077461_1078103_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_077068988.1|1081330_1081510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081496_1082447_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083649_1085071_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085334_1086051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086135_1086453_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086493_1086907_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086908_1087268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087310_1088855_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088938_1089769_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089803_1090958_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091000_1091873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1091989_1094278_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095484_1095949_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095975_1096926_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1097293_1098070_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098114_1098972_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1098993_1100010_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100144_1101185_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101379_1103461_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103696_1105190_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105420_1106215_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106435_1107794_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107790_1108633_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108651_1110538_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|1110775_1111408_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111426_1112029_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|1112032_1112194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1112180_1113131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|1113933_1114734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|1114777_1115764_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115903_1116917_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
>prophage 12
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	1153214	1218783	4109951	transposase,tRNA	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1153214_1155011_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155010_1155979_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156048_1156894_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156961_1157516_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157562_1158513_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158611_1159244_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159408_1161691_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161845_1164542_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164667_1165156_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167566_1170437_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170482_1171697_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171926_1173354_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_019248962.1|1173394_1174543_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174555_1175314_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175401_1176304_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176300_1177251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177380_1178364_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178418_1179141_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180617_1181973_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182053_1184429_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184593_1186669_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1186730_1187531_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187632_1188595_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188582_1189338_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189445_1191083_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191150_1191888_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1191990_1192566_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192738_1193275_+	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|1193277_1193622_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193637_1194483_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194521_1195901_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195978_1196860_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196957_1197908_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197904_1198315_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198422_1199277_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199269_1200232_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200277_1201402_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_010930221.1|1201513_1202386_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202510_1203290_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203443_1204865_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205299_1206997_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_003811651.1|1207025_1207148_+	membrane protein	NA	NA	NA	NA	NA
WP_010930225.1|1207223_1208165_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208491_1209238_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209245_1210172_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210293_1211211_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211250_1212204_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212228_1212807_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214480_1215089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215166_1215520_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215603_1216593_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1216795_1217746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217832_1218783_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	1417552	1469705	4109951	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1417552_1418503_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219858.1|1418489_1418657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1418669_1419023_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419035_1419398_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1419439_1419865_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420067_1421324_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421522_1422503_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422652_1423894_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423992_1424943_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424951_1425647_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1428468_1429068_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429078_1431244_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431267_1433052_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433051_1433141_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433835_1434108_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434107_1436174_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436170_1437121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437219_1438170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438285_1438618_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438614_1439301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439287_1440247_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1440288_1442649_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442648_1443281_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814028.1|1443343_1444723_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444769_1446125_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814025.1|1446403_1446652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446839_1447157_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1447429_1447945_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1448038_1448200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1448215_1448971_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449309_1449516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449523_1450183_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1450477_1452682_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452792_1454016_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454138_1455113_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455180_1456374_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456388_1457189_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457185_1459042_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459038_1459644_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459662_1461048_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461773_1463000_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463088_1463871_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463969_1464920_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464946_1465720_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465731_1466973_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468754_1469705_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	1515387	1581714	4109951	transposase	Streptococcus_virus(11.11%)	58	NA	NA
WP_005012067.1|1515387_1516338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516344_1517457_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518143_1519346_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1519549_1522210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522222_1525627_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526294_1528520_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1528566_1528893_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1528943_1529552_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1529649_1530600_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1530669_1531434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1531430_1532030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820094.1|1532133_1532979_-	putative membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533044_1533671_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1533667_1534618_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068977.1|1534604_1534793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930428.1|1534716_1535838_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1535818_1536820_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1536925_1538437_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1538433_1539738_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1539849_1540410_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1540677_1541232_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1541687_1541903_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542157_1544755_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1544751_1545939_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1546596_1547211_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1547299_1548427_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1548438_1549344_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_023994753.1|1550094_1550250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1550236_1551187_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551368_1552121_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552189_1552849_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1552845_1553574_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1553586_1555866_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1555890_1556094_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_003811129.1|1556135_1556783_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
WP_010930443.1|1556903_1557821_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1557817_1558531_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1558768_1559539_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1559543_1560143_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560387_1561878_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1561936_1562221_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010928840.1|1562217_1562346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930445.1|1562358_1562514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1562786_1563713_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1563849_1564590_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1564756_1566133_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566314_1567220_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1568871_1570674_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1570791_1571442_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1571540_1572491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1572512_1573733_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1573918_1575331_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575394_1576462_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811170.1|1576458_1577949_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1577958_1578903_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579062_1579761_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1579838_1580744_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1580763_1581714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	1617663	1673254	4109951	transposase	Brazilian_cedratvirus(25.0%)	49	NA	NA
WP_005013747.1|1617663_1618614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1618672_1619446_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1619438_1620995_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1620991_1621942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219857.1|1621928_1622084_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810741.1|1623268_1623871_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624110_1624812_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1624805_1625588_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1625772_1626723_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302777.1|1626709_1626871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930483.1|1626821_1627559_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1627748_1628507_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1628553_1629543_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1629720_1630689_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632228_1633197_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633205_1634147_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1634620_1635631_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1635621_1637136_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637132_1638479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1638481_1639516_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1639565_1641191_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1641743_1642694_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1642798_1643746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1643799_1645614_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1645606_1646281_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646410_1649485_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1649498_1649798_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650112_1650736_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1650979_1651849_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1651826_1652771_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930495.1|1652856_1653828_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930496.1|1653895_1654669_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1654665_1655862_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1655892_1656843_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657064_1657754_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1657818_1658574_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1658625_1659618_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1659627_1660581_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1660696_1661659_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663060_1663489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1663485_1664436_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1664729_1665452_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1665890_1667078_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1667081_1667462_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669181_1670153_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670166_1670880_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1670884_1671802_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1671908_1672205_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672303_1673254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	1831020	1890290	4109951	protease,transposase,tRNA	Klosneuvirus(40.0%)	52	NA	NA
WP_005013747.1|1831020_1831971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832095_1832905_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_153302779.1|1832960_1833119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|1833105_1834056_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835329_1836547_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1837603_1838506_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1838582_1839455_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1839585_1839954_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840011_1841058_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841253_1842510_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1842514_1843852_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844001_1844958_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845060_1845993_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846108_1846429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930580.1|1846430_1846781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1846828_1848403_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1848455_1849400_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849417_1850248_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850240_1851875_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1851871_1853227_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854133_1855711_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1855714_1856989_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857086_1857461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859176_1860310_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860347_1860953_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1860949_1861768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1861839_1864464_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1864450_1864705_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1864771_1865353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1865656_1865917_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866082_1866706_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1866705_1867479_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1867475_1868684_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1868709_1869183_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869256_1870207_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870305_1871256_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871354_1872704_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1873469_1874225_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874317_1877200_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1877522_1877948_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1877975_1879124_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879120_1879627_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1879633_1880929_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_010930792.1|1880969_1882274_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882275_1882914_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1882916_1884077_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884103_1885459_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1885462_1886533_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1886671_1886908_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1886995_1888102_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888067_1889372_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889390_1890290_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	1900530	1944852	4109951	transposase	Staphylococcus_phage(25.0%)	46	NA	NA
WP_005013747.1|1900530_1901481_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1901579_1902530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879573.1|1902516_1902717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930782.1|1902729_1903815_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1903830_1904592_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1904588_1905512_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1905610_1906135_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906143_1906887_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1906982_1907222_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907235_1907388_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1907473_1908964_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909055_1909994_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1909990_1910167_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910169_1910832_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1912453_1912597_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1912593_1913568_-	membrane protein	NA	NA	NA	NA	NA
WP_153302783.1|1913604_1913748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1913734_1914685_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1914681_1915956_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_076879572.1|1916053_1917253_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917249_1917903_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1917899_1919336_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919323_1919683_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1920655_1921606_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1922650_1924516_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1924773_1926294_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926381_1927032_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1927980_1929276_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929297_1930182_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930280_1931156_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931145_1931502_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_076879571.1|1931575_1932607_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1932736_1932916_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933013_1933538_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1933548_1934385_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1934497_1934869_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1934865_1935417_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1935432_1937124_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937172_1937853_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938100_1938565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1938734_1939664_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1939676_1940324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940397_1942215_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942298_1943249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|1943753_1943915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|1943901_1944852_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	2170524	2220176	4109951	transposase,tRNA	Synechococcus_phage(14.29%)	45	NA	NA
WP_005012067.1|2170524_2171475_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2171573_2173568_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2173627_2174593_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2174582_2177444_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2177446_2177953_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178057_2179266_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179267_2180206_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180367_2180841_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2180837_2181788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879558.1|2181774_2181954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004566334.1|2181898_2182339_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2182467_2183697_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2183735_2184557_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2184610_2185762_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2185853_2186342_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_010930534.1|2188868_2191442_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2191512_2194086_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194351_2194552_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2194583_2194745_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2194802_2195141_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195289_2196240_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274081.1|2196337_2197057_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_029443816.1|2197133_2197682_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2197663_2199679_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2199861_2200611_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2200623_2201487_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2201490_2202906_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203039_2203768_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2203906_2204107_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204282_2204681_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2204704_2206105_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206223_2206976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2207264_2207942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2207968_2208748_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2208744_2209629_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_077274094.1|2209646_2210336_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_010930526.1|2210410_2211169_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2211294_2211942_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212209_2213226_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213323_2214364_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2214498_2215791_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217150_2217534_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2217551_2218139_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2218176_2219127_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2219225_2220176_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	2638437	2709019	4109951	transposase	Planktothrix_phage(33.33%)	60	NA	NA
WP_010930208.1|2638437_2639388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640295_2641441_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930309.1|2641460_2642183_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642299_2642479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153302775.1|2643480_2643636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930308.1|2646296_2649638_+	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930307.1|2649634_2651830_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930306.1|2651834_2653955_+	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930305.1|2653951_2655706_+	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930304.1|2657072_2659616_+	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930303.1|2662678_2663533_-	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_003811326.1|2663529_2664345_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930302.1|2664404_2665736_+	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811324.1|2665774_2666281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247534.1|2666520_2666874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811322.1|2666945_2667371_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247533.1|2667403_2668291_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930301.1|2668293_2668617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930300.1|2669853_2670258_+	DoxX family protein	NA	NA	NA	NA	NA
WP_019247530.1|2670439_2670871_+	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_076879575.1|2671140_2671623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2671609_2672560_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2672658_2673609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2673701_2674241_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2674347_2674692_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2674749_2676198_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2676385_2676721_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2678348_2679527_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2679609_2680110_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_077274085.1|2680135_2680921_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2680932_2681397_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003811307.1|2681393_2681687_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2681683_2682460_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2682488_2683316_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2683441_2683912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2684038_2684932_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2684979_2686161_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2686173_2686989_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2687122_2687650_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2687646_2688144_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2688291_2688669_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811244.1|2689938_2690550_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2690784_2691912_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2692022_2693111_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2693163_2694015_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2694034_2694916_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2695092_2696406_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2696616_2697450_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2697446_2698028_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_124740682.1|2698152_2698395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|2698381_2699332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2699347_2700463_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2700565_2701492_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2701491_2702730_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2702726_2703494_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2703494_2704196_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2704277_2704724_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2705613_2706252_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2707019_2707970_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2708068_2709019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	2839355	2912366	4109951	protease,transposase	uncultured_Mediterranean_phage(22.22%)	52	NA	NA
WP_005012067.1|2839355_2840306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2840440_2841547_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841557_2842655_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842799_2844005_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844011_2844533_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2844529_2845021_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845017_2845269_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845249_2845735_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845870_2849332_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|2849328_2850234_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850243_2850675_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850921_2851425_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|2851436_2852903_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852977_2853853_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853849_2854857_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855324_2855630_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855720_2856311_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856501_2857518_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2857709_2860046_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860128_2860563_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931099.1|2862654_2863449_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2863480_2864185_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864259_2865060_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865056_2865464_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2865460_2866102_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|2866094_2868116_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869355_2870687_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2870683_2871634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873339_2873606_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874313_2874652_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879204_2879807_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879903_2881193_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881250_2881982_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881978_2882782_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882778_2883867_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883863_2884793_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884941_2886087_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931110.1|2887388_2891210_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891366_2892035_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892039_2893713_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893731_2895051_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|2895055_2897407_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|2897426_2899595_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2899591_2904781_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904870_2905185_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2905412_2905658_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905752_2906271_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906370_2907576_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907691_2909089_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909205_2909784_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909856_2911248_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2911415_2912366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	2922012	2981762	4109951	transposase	Vibrio_phage(16.67%)	56	NA	NA
WP_005012067.1|2922012_2922963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925346_2926459_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926515_2927466_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813070.1|2927673_2927895_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2928108_2929515_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2929511_2930816_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_003813076.1|2930812_2932120_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2932216_2932669_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2932671_2933136_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|2933215_2934895_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|2934999_2935977_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2936056_2937025_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2937045_2938419_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2938415_2939252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2939368_2939824_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2939839_2940112_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2940204_2940528_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2940575_2940956_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2941175_2941973_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2942129_2943992_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2944041_2944953_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2944957_2945224_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_033446289.1|2945310_2946141_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2946315_2947281_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2947451_2948462_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_076879579.1|2948468_2949761_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_023996438.1|2950694_2950853_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814555.1|2950903_2952376_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2952386_2952797_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2952860_2953907_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2954013_2954892_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2954905_2956102_-	amidohydrolase	NA	NA	NA	NA	NA
WP_010931141.1|2956163_2957855_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
WP_005012067.1|2957851_2958802_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|2958788_2959034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2958922_2959819_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962096_2964322_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964486_2965575_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965531_2966185_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966232_2967030_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967561_2968512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2968592_2969741_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969797_2970748_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|2970734_2970953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|2970846_2971152_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971180_2971615_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971616_2972861_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972857_2973568_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973582_2974494_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974856_2975261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975257_2975716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2975722_2976631_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2976627_2977494_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977480_2978308_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978318_2979446_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980523_2981762_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	2987742	3033129	4109951	transposase	Ostreococcus_lucimarinus_virus(16.67%)	42	NA	NA
WP_023852714.1|2987742_2988693_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988796_2989417_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989520_2990261_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2991395_2992520_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992565_2992934_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993175_2994126_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995161_2995704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|2995896_2996103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996089_2997040_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2997036_2998002_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998071_2998908_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_076879583.1|2999384_3000530_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3000591_3001542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3001734_3002517_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3002530_3003280_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3003307_3004654_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3004679_3005609_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3005724_3006630_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3006647_3007847_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3007919_3008612_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3008660_3011087_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3011131_3012082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809026.1|3012298_3012667_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|3012953_3013880_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|3013923_3014934_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|3014930_3015365_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|3016490_3017279_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|3017288_3018071_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3018074_3019166_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3019271_3020747_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3020888_3021437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809010.1|3021452_3021914_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|3022014_3023004_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|3023302_3024004_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3024042_3025416_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|3025454_3026741_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931177.1|3027627_3028530_+	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_010931178.1|3028477_3029698_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931179.1|3029694_3030204_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010926062.1|3030193_3030889_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931181.1|3030959_3031829_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930208.1|3032178_3033129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	3403436	3467267	4109951	transposase,tRNA	Staphylococcus_phage(12.5%)	50	NA	NA
WP_005012067.1|3403436_3404387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3404373_3404550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|3405153_3406248_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3406240_3407575_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3407528_3408212_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3408237_3409401_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3409397_3410399_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3410398_3411271_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3411267_3412017_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3412013_3412805_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412801_3413941_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3414249_3415002_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3415035_3415818_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415821_3416211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3417350_3418214_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3418249_3419338_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_080501793.1|3420270_3420684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3420637_3423616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3424542_3425421_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3427369_3428320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428316_3428784_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3428826_3429597_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3429617_3430418_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3430428_3431838_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3431932_3432718_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3432957_3433974_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3434081_3434474_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3434611_3435292_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3435296_3436295_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436363_3437314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3438818_3439520_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3439519_3440944_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931360.1|3440960_3442016_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010931361.1|3442012_3443353_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3443468_3445232_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3445343_3446222_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3446334_3447150_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3447153_3447405_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3447489_3448506_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3448836_3449058_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3451418_3452336_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3452833_3454042_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3454121_3455693_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3455810_3456746_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3456934_3457879_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|3457947_3458163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|3458446_3464164_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3464169_3465297_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3465352_3465979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3466250_3467267_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP018039	Bordetella pertussis strain J294 chromosome, complete genome	4109951	3471681	3590623	4109951	transposase,tRNA	Acinetobacter_phage(22.22%)	102	NA	NA
WP_019247745.1|3471681_3472554_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3472822_3474043_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3474039_3474699_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3474770_3475403_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3475432_3475951_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3475961_3477071_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3477117_3477972_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3477973_3478876_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3480098_3481049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3482803_3483793_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3483968_3484757_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3484753_3485785_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3485803_3486367_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3486422_3487943_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3488206_3488911_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3488918_3489656_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3489761_3490136_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3490178_3491468_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3491464_3492634_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3492630_3493470_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3493529_3494465_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3494477_3495428_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3495526_3496489_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3496520_3496880_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3497004_3497907_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3497908_3499681_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3499715_3500492_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3501815_3502766_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3503617_3503938_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3504010_3504892_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3505008_3505251_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3505388_3505859_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3505871_3506411_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3506445_3507987_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3508085_3508991_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3509033_3510434_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3510443_3510866_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3511048_3511933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3512008_3513085_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3513391_3515494_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3515536_3517606_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3517704_3518655_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3518783_3519917_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3519960_3520866_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3520868_3522569_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3522565_3523486_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3523493_3524471_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3524529_3525564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3527538_3527775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3527901_3528765_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3528853_3529675_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3529754_3530492_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3530488_3531481_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3531594_3532257_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3532301_3533450_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3535773_3536724_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3537199_3538150_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_101558015.1|3538122_3539064_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3539162_3540113_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3540409_3540907_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3540949_3542725_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3542771_3543599_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3543605_3544340_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3545509_3546304_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3546593_3547184_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3547217_3548546_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3548620_3549766_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3549877_3550876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3550838_3551273_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3552789_3553674_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3553670_3554876_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3554872_3555733_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3555845_3557636_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3557676_3558342_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3558342_3558651_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3558816_3560103_-	membrane protein	NA	NA	NA	NA	NA
WP_077108686.1|3561536_3562487_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3564438_3565653_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3565758_3566748_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3566744_3567353_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3567365_3567995_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3567991_3568612_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3568643_3569435_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|3570277_3570742_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3570760_3571687_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3571740_3573027_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3573957_3574830_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3574826_3575777_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3575875_3576826_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3576930_3577161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3577287_3577677_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3577693_3580075_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3580067_3581444_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3581459_3582455_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3582473_3583466_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3583706_3584267_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3584271_3584598_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3584634_3585447_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3585457_3586540_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3586626_3587901_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3588623_3589574_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3589672_3590623_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
