The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	27282	70036	4108491	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	77634	136108	4108491	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	164893	219510	4108491	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(14.29%)	47	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|165942_166893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168336_169239_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170128_171559_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177416_177944_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182385_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185375_189050_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189681_190104_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190131_190551_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190579_191026_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191152_191650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191804_194075_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194150_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196507_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212273_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 4
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	225502	287973	4108491	transposase,tRNA,protease	Bacillus_phage(25.0%)	54	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|226671_227367_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|227383_228796_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|228908_230339_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|230380_232294_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|232612_233179_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|233269_234271_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268803_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279126_279342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281474_282323_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	391906	449415	4108491	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418577_418847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	590420	651611	4108491	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591846_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593754_594246_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594264_595338_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595384_596488_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596563_597184_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597204_597714_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597768_598020_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598083_599217_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599224_599611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599607_602127_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602555_602894_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602890_603397_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603458_604259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604369_605311_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605404_606940_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608619_610470_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610473_611307_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611306_612248_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612499_613471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613612_615901_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616207_617116_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617170_618136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618210_619872_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619943_620654_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620620_620785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620802_621753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622451_622835_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622892_623495_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623512_623914_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624029_624941_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624937_625519_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626313_627048_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627088_628138_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628285_628864_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629250_630228_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630321_634716_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634916_635765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635923_636736_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636791_637742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637840_638641_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638702_639086_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639097_640450_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640737_641067_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641069_641819_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642001_642922_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642968_643181_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643203_643626_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643642_644743_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644839_646357_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647293_648166_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648256_649351_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649644_650595_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650669_651611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	656935	703126	4108491	tail,transposase,tRNA,terminase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656935_657961_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658001_658241_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658310_659900_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659899_660448_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660528_661101_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661119_662031_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662104_663073_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663195_664269_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664273_666094_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666170_667121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667209_667545_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667678_668329_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668350_669769_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669838_670594_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670562_671321_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671331_672213_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672229_672937_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672939_673698_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673907_675650_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675642_676167_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676206_677001_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677168_678242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678340_679291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679542_679749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679820_680432_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680986_681238_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681230_681920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681937_682159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682176_683127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683766_684252_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684238_685516_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685518_686937_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686965_688021_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688026_688269_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688391_688994_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689422_690373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691047_691299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691361_691844_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691857_692046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692045_692441_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692437_692836_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692832_693255_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693262_693763_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694017_694536_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694545_694875_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694892_695183_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695208_697821_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697830_698190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698257_698791_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698787_699177_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699169_703126_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	709292	763222	4108491	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709292_711023_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711075_711504_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711506_712187_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712186_712645_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712681_713656_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713672_714989_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715020_715518_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715604_716294_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716293_717343_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717339_718134_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718302_718653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718628_719186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720315_721266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723403_724633_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724635_726078_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726182_727328_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727359_728157_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728181_729741_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729737_732110_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732219_733323_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733322_734015_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734158_734860_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734844_735222_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735953_736904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737063_737936_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738276_738495_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738534_739914_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739955_741353_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741392_743045_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743048_743933_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743932_744874_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744952_746572_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746738_747554_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747621_748191_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748191_749142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749796_750894_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750927_752193_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752350_753301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753544_754135_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754150_756595_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756714_757686_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757817_758342_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758301_759252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759473_761669_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761741_762149_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762271_763222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	885811	953787	4108491	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885811_886828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887024_888008_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889606_890995_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891025_892015_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892125_893358_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893639_894440_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894462_896694_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897481_897928_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897949_898696_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898839_899817_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900450_901062_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901055_902273_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902413_903364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903360_904080_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904200_906360_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906450_906720_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906808_907015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907013_907541_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907559_908339_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908506_909523_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909595_910087_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910097_911813_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912976_913927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913923_915756_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916154_916814_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917341_918022_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918303_919020_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919034_920336_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922480_925369_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925592_926945_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926973_927495_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927491_928946_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928980_929229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929334_930210_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930235_931291_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931303_932095_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932127_933498_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934674_935625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935677_935899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936058_936271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936390_937509_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937605_937821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938014_938266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938378_939329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939325_939709_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939763_941578_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941727_942555_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942600_943581_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943577_943790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943786_944968_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945131_945866_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945867_948480_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948615_950529_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951144_951555_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951652_952738_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952836_953787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	997316	1069835	4108491	transposase,tRNA	Enterococcus_phage(14.29%)	59	NA	NA
WP_005012067.1|997316_998267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998371_999421_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999558_1000575_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002083_1002656_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002715_1003447_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003498_1004416_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005223_1008403_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009853_1010105_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010250_1010865_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011051_1013112_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013241_1014093_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014089_1014716_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014712_1016467_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016759_1019465_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019477_1021139_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021151_1022942_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023163_1024339_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024381_1025332_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025430_1026171_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026365_1028402_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028419_1029430_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029547_1030741_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030770_1031544_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031540_1032731_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032756_1033695_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033691_1036040_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036194_1036836_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038165_1038318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038349_1038898_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038916_1039402_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039579_1040518_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040520_1040838_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040883_1041828_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043508_1044159_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044212_1044548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044544_1045405_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045421_1045703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045776_1046040_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046283_1047234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047532_1048270_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048705_1049029_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049063_1049624_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049744_1050620_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050632_1051580_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051681_1051975_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1052001_1054059_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054073_1054574_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054647_1056354_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057217_1058270_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058322_1058712_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058720_1059353_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059452_1060469_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061299_1062307_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062303_1063947_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063943_1064831_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064971_1065445_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065434_1066457_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066453_1067881_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068818_1069835_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	1073588	1135664	4108491	transposase,tRNA,holin	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1073588_1074725_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074721_1075795_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075952_1077389_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077479_1078121_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078456_1079473_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081515_1082466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083668_1085090_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085353_1086070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086154_1086472_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086512_1086926_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086927_1087287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087329_1088874_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088957_1089788_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089822_1090977_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091019_1091892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092008_1094297_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095503_1095968_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095994_1096945_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096962_1097100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097312_1098089_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098133_1098991_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099012_1100029_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100163_1101204_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101398_1103480_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103715_1105209_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105439_1106234_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106454_1107813_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107809_1108652_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108670_1110557_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110498_1110750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110794_1111427_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111445_1112048_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112199_1113150_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113730_1114438_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114796_1115783_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115922_1116936_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116932_1117883_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117900_1118041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117995_1118454_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118490_1119804_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119821_1120193_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120189_1121653_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121793_1122522_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122503_1125353_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125565_1126516_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126683_1127508_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127507_1128386_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129290_1130406_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130434_1131229_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131225_1133091_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133169_1133802_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133798_1134101_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134143_1135664_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	1153234	1219753	4108491	transposase,tRNA	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_023853221.1|1153234_1155031_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155030_1155999_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156068_1156914_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156981_1157536_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157582_1158533_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158631_1159264_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159428_1161711_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161865_1164562_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164687_1165176_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167586_1170457_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170502_1171717_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171946_1173374_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173471_1174563_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174575_1175334_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175421_1176324_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176320_1177271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177400_1178384_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178438_1179161_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180639_1181995_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182075_1184451_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184615_1186691_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186752_1187547_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187654_1188617_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188604_1189360_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189467_1191105_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191172_1191910_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192012_1192588_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192760_1193297_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193329_1193644_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193659_1194505_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194543_1195923_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1196000_1196882_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196980_1197931_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197927_1198338_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198445_1199300_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199292_1200255_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200300_1201425_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201530_1202409_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202533_1203313_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203466_1204888_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205322_1207020_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207246_1208188_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208514_1209261_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209268_1210195_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210316_1211234_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211273_1212227_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212251_1212830_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214503_1215112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215189_1215543_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215626_1216616_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1216612_1216801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216818_1217769_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217855_1218806_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218802_1219753_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	1270681	1327892	4108491	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270681_1271632_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275378_1275990_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276212_1277673_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277769_1279362_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279715_1279973_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279974_1281315_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281410_1282100_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282112_1283543_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285267_1286089_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286099_1287671_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287699_1288677_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288703_1289507_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289503_1290298_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290305_1291541_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291554_1291968_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292717_1293668_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294289_1296017_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296128_1297487_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297543_1297762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297779_1298730_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298770_1299841_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299863_1300742_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300913_1301885_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302047_1302890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303051_1303732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303725_1304895_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1304891_1305923_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1305990_1307208_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307242_1308775_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308855_1309479_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309509_1310121_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310156_1310627_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311058_1312063_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312099_1313614_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313617_1314577_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314605_1315409_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315410_1317045_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317128_1318190_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318388_1318658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318661_1319186_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319601_1320552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320548_1321583_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321691_1322330_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322624_1322852_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322974_1323688_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323932_1324883_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325022_1325268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325382_1326831_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326941_1327892_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	1418125	1470278	4108491	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1418125_1419076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419093_1419246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419242_1419596_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419608_1419971_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420012_1420438_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420640_1421897_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422095_1423076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423225_1424467_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424565_1425516_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425524_1426220_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429041_1429641_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429651_1431817_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431840_1433625_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433624_1433714_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434408_1434681_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434680_1436747_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436743_1437694_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437792_1438743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438858_1439191_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439187_1439874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439860_1440820_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1440852_1443222_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443221_1443854_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443955_1445296_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445342_1446698_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1446988_1447225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447412_1447730_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448002_1448518_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448788_1449544_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449882_1450089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450096_1450756_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451050_1453255_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453365_1454589_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454711_1455686_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455753_1456947_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456961_1457762_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457758_1459615_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459611_1460217_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460235_1461621_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462346_1463573_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463661_1464444_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464542_1465493_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465519_1466293_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466304_1467546_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469327_1470278_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	1514203	1582289	4108491	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1514203_1514692_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514809_1515388_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515493_1515862_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515960_1516911_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516917_1518030_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518716_1519919_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520122_1522783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522795_1526200_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526867_1529093_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529139_1529466_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529516_1530125_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530223_1531174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531243_1532008_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1532004_1532541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532707_1533559_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533618_1534245_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534241_1535192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535290_1536403_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536392_1537394_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537499_1539011_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539007_1540312_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540423_1540984_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541251_1541806_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542261_1542477_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542731_1545329_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545325_1546513_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547171_1547786_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1547874_1548996_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549013_1549919_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550811_1551762_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551943_1552696_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552764_1553424_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553420_1554149_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554161_1556441_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556465_1556669_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556710_1557343_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557478_1558396_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558392_1559106_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559343_1560114_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560118_1560718_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560962_1562453_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562511_1562796_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563361_1564288_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564424_1565165_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565331_1566708_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566889_1567795_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569446_1571249_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571366_1572017_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572115_1573066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573087_1574308_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574493_1575906_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575969_1577037_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577036_1578524_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578533_1579478_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579637_1580336_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580413_1581319_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581338_1582289_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	1618238	1673829	4108491	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618238_1619189_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619247_1620021_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620013_1621570_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621566_1622517_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623843_1624446_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624685_1625387_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625380_1626163_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626347_1627298_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627396_1628134_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628323_1629082_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629128_1630118_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630295_1631264_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632803_1633772_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633780_1634722_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635195_1636206_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636196_1637711_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637707_1639054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639056_1640091_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640140_1641766_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642318_1643269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643373_1644321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644374_1646189_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646181_1646856_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646985_1650060_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650073_1650373_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650687_1651311_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651554_1652424_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652401_1653346_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653431_1654358_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654470_1655250_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655240_1656437_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656467_1657418_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657639_1658329_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658393_1659149_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659200_1660193_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660202_1661156_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661271_1662234_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663635_1664064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664060_1665011_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665304_1666027_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666465_1667653_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667656_1668007_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669756_1670728_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670741_1671455_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671459_1672377_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672483_1672780_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672878_1673829_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	1831596	1890866	4108491	transposase,tRNA,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831596_1832547_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832671_1833481_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833681_1834632_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835905_1837123_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838179_1839082_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839158_1840031_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840161_1840530_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840587_1841634_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841829_1843086_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843090_1844428_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844577_1845534_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845636_1846569_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846684_1847005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846997_1847357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847404_1848979_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849031_1849976_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849993_1850824_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850816_1852451_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852447_1853803_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854709_1856287_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856290_1857565_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857662_1858037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859752_1860886_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860923_1861529_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861525_1862344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862415_1865040_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865026_1865281_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865347_1865929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866232_1866493_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866658_1867282_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867281_1868055_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868051_1869260_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869285_1869759_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869832_1870783_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870881_1871832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871930_1873280_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874045_1874801_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874893_1877776_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878098_1878524_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878551_1879700_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879696_1880203_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880218_1881505_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881554_1882850_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882851_1883490_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883495_1884653_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884679_1886035_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886038_1887109_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887247_1887484_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887571_1888678_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888643_1889948_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889966_1890866_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	1901106	1945429	4108491	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1901106_1902057_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902155_1903106_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903305_1904391_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904406_1905168_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905164_1906088_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906186_1906711_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906719_1907463_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907558_1907798_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907811_1907964_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908049_1909540_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909631_1910570_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910566_1910743_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910745_1911408_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913029_1913173_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913169_1914144_-	membrane protein	NA	NA	NA	NA	NA
WP_162300163.1|1914038_1914293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1914310_1915261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915257_1916532_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916635_1917829_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917825_1918479_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918475_1919912_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919899_1920259_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921073_1921214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921231_1922182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923227_1925093_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925350_1926871_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926958_1927609_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1928557_1929853_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929874_1930759_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930857_1931733_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931722_1932079_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932209_1933184_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933313_1933493_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933590_1934115_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934125_1934962_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935074_1935446_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935442_1935994_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936009_1937701_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937749_1938430_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938677_1939142_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939311_1940241_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940253_1940901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940974_1942792_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942875_1943826_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944478_1945429_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	1975208	2039577	4108491	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975208_1976159_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976380_1977331_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977429_1978395_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978532_1979432_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982026_1983514_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983524_1984721_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984793_1986113_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986109_1986985_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1987015_1988164_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988181_1988496_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988517_1989240_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989239_1990058_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990062_1990590_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990595_1991852_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992210_1993350_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993427_1994300_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995170_1996121_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996080_1996716_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997075_1998398_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998716_1999538_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000962_2001535_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001574_2003404_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003366_2004425_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004462_2004924_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2005008_2005755_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007245_2010476_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010542_2011874_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012126_2012501_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012603_2013782_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013792_2014383_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014493_2015300_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015325_2016120_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017120_2018095_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018253_2018766_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018922_2019894_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021638_2022445_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2022441_2023743_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2023693_2024458_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024571_2025342_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025426_2026614_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026686_2027061_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2027161_2028424_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028420_2029278_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029450_2030452_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030903_2031854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2033417_2034569_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034937_2035174_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035237_2035405_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2035518_2037414_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2037577_2038528_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038626_2039577_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	2171109	2220762	4108491	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2171109_2172060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172158_2174153_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174212_2175178_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175167_2178029_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178031_2178538_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178642_2179851_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179852_2180791_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180952_2181426_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181422_2182373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182483_2182924_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183052_2184282_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184320_2185142_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185195_2186347_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186438_2186927_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189477_2192027_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192097_2194671_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194936_2195137_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195168_2195330_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195387_2195726_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195874_2196825_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197599_2198268_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2198249_2200205_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2200447_2201197_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201209_2202073_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202076_2203492_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203625_2204354_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204492_2204693_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204868_2205267_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205290_2206691_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206809_2207562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2207850_2208528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208554_2209334_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209330_2210215_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210232_2211012_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210996_2211755_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2211892_2212528_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212795_2213812_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213909_2214950_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215084_2216377_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217736_2218120_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218137_2218725_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2218762_2219713_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2219811_2220762_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	2228486	2288497	4108491	transposase,protease	uncultured_Caudovirales_phage(33.33%)	60	NA	NA
WP_005012067.1|2228486_2229437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930522.1|2229535_2230486_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809939.1|2230482_2230755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930805.1|2231013_2233725_-	autotransporter BapA	NA	NA	NA	NA	NA
WP_010930806.1|2234379_2235837_+	cardiolipin synthetase	NA	NA	NA	NA	NA
WP_003820087.1|2235833_2236184_-	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_003809933.1|2236327_2236756_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_010930807.1|2236839_2238003_+	alanine racemase	NA	NA	NA	NA	NA
WP_023995091.1|2237999_2240441_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930809.1|2240525_2242547_+	SpoIIE family protein phosphatase	NA	NA	NA	NA	NA
WP_014905553.1|2242543_2243731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023995090.1|2245057_2245258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930812.1|2245294_2245993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809919.1|2246167_2246770_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_010930813.1|2246790_2248593_-	type III secretion system outer membrane ring subunit SctC	NA	NA	NA	NA	NA
WP_010930814.1|2248583_2248982_-	type III secretion system chaperone	NA	NA	NA	NA	NA
WP_010930815.1|2248978_2250028_-	type III secretion system export apparatus subunit SctU	NA	NA	NA	NA	NA
WP_010930816.1|2250024_2250825_-	type III secretion system export apparatus protein SctT	NA	NA	NA	NA	NA
WP_010930817.1|2250836_2251103_-	type III secretion system export apparatus subunit SctS	NA	NA	NA	NA	NA
WP_004568087.1|2251108_2251780_-	type III secretion system export apparatus protein SctR	NA	NA	NA	NA	NA
WP_010930818.1|2251776_2252856_-	type III secretion system cytoplasmic ring protein SctQ	NA	NA	NA	NA	NA
WP_010930819.1|2252852_2253401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820063.1|2253397_2253907_-	type III secretion system central stalk protein BscO	NA	NA	NA	NA	NA
WP_003820061.1|2253906_2255241_-	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA	NA
WP_010930820.1|2255245_2255884_-	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA	NA
WP_003820059.1|2255853_2256516_-	type III secretion system sorting platform protein BscK	NA	NA	NA	NA	NA
WP_010930821.1|2256508_2257333_-	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA	NA
WP_019248576.1|2257329_2257737_-	type III secretion system inner rod subunit SctI	NA	NA	NA	NA	NA
WP_010930823.1|2257733_2258255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809889.1|2258259_2258721_-	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_010930824.1|2258744_2259953_-	type III secretion system translocon subunit BopB	NA	NA	NA	NA	NA
WP_010930825.1|2259976_2260918_-	type III secretion system translocon subunit SctB	NA	NA	NA	NA	NA
WP_004568102.1|2260965_2261451_-	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_010930826.1|2261466_2261742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820049.1|2261763_2262381_-	type III secretion system needle tip complex Bsp22	NA	NA	NA	NA	NA
WP_010930827.1|2262544_2263642_+	type III secretion system gatekeeper subunit SctW	NA	NA	NA	NA	NA
WP_010930828.1|2263638_2264016_+	type III secretion chaperone SycN	NA	NA	NA	NA	NA
WP_010930829.1|2264020_2264431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930830.1|2264427_2264796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930831.1|2264792_2266892_+	type III secretion system export apparatus subunit SctV	NA	NA	NA	NA	NA
WP_010930832.1|2266888_2268169_+	type III secretion system inner membrane ring subunit SctD	NA	NA	NA	NA	NA
WP_003820040.1|2268209_2268509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809869.1|2268498_2268765_+	type III secretion protein	NA	NA	NA	NA	NA
WP_010930833.1|2268800_2269256_-	CesT family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_005012067.1|2269597_2270548_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2270646_2271597_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2271898_2272375_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2272998_2274636_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2274666_2275980_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2276113_2276431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2276531_2277854_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2277850_2278801_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2279330_2280353_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2280381_2281212_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2281228_2282926_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2282990_2284067_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2284226_2285090_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2285120_2285690_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2285706_2286558_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2287615_2288497_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 22
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	2478116	2536360	4108491	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2478116_2479067_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2479546_2480203_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2480217_2481885_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2481887_2482517_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2482728_2483823_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2483967_2484780_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2484783_2486367_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2486537_2487668_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2487854_2488931_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2489012_2489663_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2489677_2491081_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2491364_2492183_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2492179_2492884_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2493783_2494899_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2494932_2495307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2495329_2496487_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2496499_2496733_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2497367_2500337_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2500351_2500561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2500712_2501342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2501338_2503396_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2503452_2504133_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2504129_2504690_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2504696_2505794_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2505946_2506540_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2506536_2507829_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2507842_2508385_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2508394_2509231_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2509264_2510326_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2510367_2511420_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2511435_2511738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2511879_2512830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2512847_2513012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2513008_2514703_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2514699_2515785_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2515832_2516732_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2516742_2517387_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2518408_2521651_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2521661_2522816_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2523042_2524005_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2524103_2525054_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2525152_2526103_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2526112_2526802_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2526861_2527299_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2527344_2528238_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2528285_2529458_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2529454_2530609_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2530805_2531156_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2531145_2531580_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2531596_2532547_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2532694_2533162_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2533142_2534300_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2534365_2535292_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2535409_2536360_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	2578638	2645138	4108491	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2578638_2579589_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2579958_2580531_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2580533_2581544_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2581536_2582037_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2582047_2582389_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2582457_2583192_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2583208_2583478_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2583500_2584289_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2584335_2585352_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2585568_2587011_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2587189_2588809_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_077071158.1|2588929_2590750_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	67.4	5.6e-07
WP_010930330.1|2590828_2592361_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2592394_2594041_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2594110_2595133_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2595150_2596284_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2596286_2596976_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2596975_2597761_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2597804_2598569_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2598607_2600029_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2600094_2600799_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2600846_2601266_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2601278_2601686_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2601869_2602580_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2602706_2602997_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2603014_2603497_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2608002_2609157_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2609462_2610479_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2610725_2611514_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2611580_2612261_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2612257_2613028_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010929588.1|2613126_2614077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2614132_2615050_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2615060_2616239_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2616258_2617254_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2618842_2619451_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2619438_2620479_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2620496_2621459_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2621455_2622649_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2622645_2623443_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2623468_2624455_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2624473_2626513_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2626714_2627395_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2627408_2628320_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2628316_2628895_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2629033_2629939_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2629946_2633366_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2633353_2635954_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2636909_2637542_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2637935_2638694_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2638690_2639893_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2640080_2641031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2641938_2643084_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2643070_2643826_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2643942_2644122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2644187_2645138_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	2673253	2710665	4108491	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2673253_2674204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2674302_2675253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2675345_2675885_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2675991_2676336_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2676393_2677842_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2678029_2678365_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2679992_2681171_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2681253_2681754_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2681863_2682565_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2682576_2683041_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2683055_2683331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2683327_2684104_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2684132_2684960_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2685085_2685556_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2685682_2686576_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2686623_2687805_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2687817_2688633_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2688766_2689294_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2689290_2689788_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2689935_2690313_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2690534_2691485_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2691583_2692195_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2692429_2693557_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2693667_2694756_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2694808_2695660_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2695679_2696561_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2696737_2698051_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2698261_2699095_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2699091_2699673_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2700026_2700977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2700992_2702108_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2702210_2703137_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2703136_2704375_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2704371_2705139_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2705139_2705841_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2705922_2706369_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2707258_2707897_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2708665_2709616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2709714_2710665_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	2809792	2930169	4108491	transposase,protease	Agrobacterium_phage(16.67%)	97	NA	NA
WP_023853639.1|2809792_2810743_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2810841_2811792_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2812120_2812726_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2812779_2814093_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2814167_2814638_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2814637_2815426_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2815436_2817089_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2817176_2818127_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2819288_2819795_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2819791_2820556_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2820571_2820856_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2820920_2821910_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2822081_2823011_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2822982_2823669_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2823702_2824248_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2824292_2825558_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2825554_2826457_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2827638_2828583_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2828677_2830195_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2830236_2831865_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2831972_2832854_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2835966_2836341_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2836365_2836704_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2836747_2838382_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2838420_2839767_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2839874_2841296_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2841365_2841950_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2842052_2843003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2843137_2844244_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2844254_2845352_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2845496_2846702_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2846708_2847230_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2847226_2847709_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2847714_2847966_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2847946_2848432_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2848567_2852029_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2852046_2852931_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2852940_2853372_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2853618_2854122_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2854199_2855600_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2855674_2856550_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2856546_2857554_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2858021_2858327_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2858417_2859008_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2859198_2860215_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2860406_2862743_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2862825_2863260_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2863358_2864309_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2864407_2865358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2865354_2866149_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2866180_2866885_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2866959_2867760_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2867756_2868164_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2868160_2868802_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2868794_2870795_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2872055_2873387_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2873383_2874334_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2876040_2876307_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2877014_2877353_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2881906_2882509_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2882605_2883895_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2883952_2884684_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2884680_2885484_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2885480_2886569_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2886565_2887495_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2887643_2888789_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2888810_2889761_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2889778_2889937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2890091_2893913_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2894069_2894738_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2894742_2896416_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2896434_2897754_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2897758_2900074_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2900129_2902298_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2902294_2907475_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2907573_2907888_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2908115_2908361_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2908455_2908974_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2909073_2910279_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2910394_2911792_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2911908_2912487_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2912559_2913951_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2914118_2915069_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2915349_2915970_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2915966_2916380_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2916376_2917420_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2917475_2917664_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2917673_2918438_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2918528_2919185_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2919276_2920035_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2920060_2921662_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2921862_2922867_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2922967_2923231_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2923348_2924125_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2924715_2925666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2928049_2929162_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2929218_2930169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	2960555	3004246	4108491	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2960555_2961506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2961523_2961673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2961626_2962523_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2964800_2967026_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2967190_2968279_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2968235_2968889_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2968936_2969734_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2970265_2971216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2971296_2972445_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2972501_2973452_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2973550_2973856_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2973884_2974319_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2974320_2975565_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2975561_2976272_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2976286_2977198_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2977560_2977965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2977961_2978420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2978426_2979335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2979331_2980198_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2980184_2981012_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2981022_2982150_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2983227_2984466_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2984507_2985770_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2985776_2986529_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2986580_2986766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2987041_2987506_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2987537_2988197_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2988341_2990450_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2990446_2991397_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2991500_2992121_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2992224_2992965_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2994099_2995224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2995269_2995638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995879_2996830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2997865_2998408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2998605_2998776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2998793_2999744_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2999740_3000649_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3000775_3001612_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3002124_3003234_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3003295_3004246_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	3384191	3437932	4108491	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3384191_3385142_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3385546_3386191_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3386215_3386800_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3386900_3387518_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3387520_3389236_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3389232_3389541_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3389557_3390175_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3390219_3390522_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3390622_3391477_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3391664_3391889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3392058_3392331_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3392748_3393156_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3393525_3394320_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3394420_3395656_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3395724_3396741_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3396752_3398129_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3398125_3399322_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3399318_3400857_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3400853_3402113_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3404053_3405004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3405770_3406865_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3406857_3408192_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3408145_3408829_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3408854_3410018_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3410014_3411016_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3411015_3411888_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3411884_3412634_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3412630_3413422_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3413418_3414558_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3414833_3415619_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3415652_3416435_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3416438_3416828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3417967_3418831_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3418866_3419955_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3419951_3420902_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3421255_3424234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3425160_3426039_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3427987_3428938_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428934_3429402_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429444_3430215_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3430235_3431036_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3431046_3432456_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3432550_3433336_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3433575_3434592_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3434699_3435092_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3435229_3435910_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3435914_3436886_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436981_3437932_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	3444087	3503385	4108491	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3444087_3445851_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3445962_3446841_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3446953_3447769_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3447772_3448024_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3448108_3449125_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3449455_3449677_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3452037_3452955_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3453452_3454661_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3454740_3456312_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3456429_3457365_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3457553_3458498_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3459065_3464783_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3464788_3465916_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3465971_3466598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3466869_3467886_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3467981_3468692_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3468688_3469678_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3469773_3471405_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471407_3472145_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472300_3473173_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3473522_3474662_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3474658_3475318_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475389_3476022_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476051_3476570_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3476580_3477690_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3477736_3478591_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3478592_3479495_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3480717_3481668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3483422_3484412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3484587_3485376_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485372_3486404_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486422_3486986_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487041_3488562_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3488825_3489530_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3489537_3490266_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490380_3490755_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3490797_3492087_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492083_3493253_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493249_3494089_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494148_3495084_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495096_3496047_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496145_3497108_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497139_3497499_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3497623_3498526_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498527_3500300_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500334_3501111_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502434_3503385_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP017882	Bordetella pertussis strain I384 chromosome, complete genome	4108491	3518323	3576396	4108491	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3518323_3519274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3519402_3520536_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3520579_3521485_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3521487_3523188_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3523184_3524105_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3524112_3525090_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3525148_3526183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3528157_3528394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3528520_3529384_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3529472_3530294_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3530373_3531111_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3531107_3532100_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3532252_3532876_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3532920_3534069_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3536392_3537343_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3537683_3538634_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3538732_3539683_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3539979_3540477_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3540519_3542295_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3542302_3543169_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3543175_3543910_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3545079_3545874_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3546163_3546754_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3546787_3548116_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3548190_3549336_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3549447_3550446_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3550408_3550843_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3552359_3553244_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3553240_3554446_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3554442_3555303_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3555415_3557206_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3557246_3557891_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3557912_3558221_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3558386_3559673_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3561106_3562057_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3564008_3565223_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3565328_3566318_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3566314_3566923_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3566935_3567565_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3567561_3568182_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3568213_3569005_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3569856_3570312_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3570330_3571257_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3571310_3572597_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3573527_3574400_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3574396_3575347_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3575445_3576396_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
