The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	0	61595	4102575	tRNA,transposase	Natrialba_phage(12.5%)	56	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_077069004.1|21943_22894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013036.1|22911_23100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|28331_29282_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29723_30158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|30190_31417_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31413_31911_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|32118_33027_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|33212_34055_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|37998_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|46162_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|59595_60546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|60644_61595_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	255277	326265	4102575	transposase	uncultured_Mediterranean_phage(15.38%)	53	NA	NA
WP_010931561.1|255277_256294_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|256575_257064_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|258407_259088_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|259149_260001_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817654.1|259997_260873_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|260898_261792_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|261803_263693_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|264029_267803_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|267799_268750_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302770.1|268736_268904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929826.1|269058_269751_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|270124_270625_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_023853391.1|270731_271652_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|271668_272145_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|272238_274089_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|274144_274903_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003818226.1|274930_276403_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|276437_277217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|277229_278063_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815975.1|278071_278845_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|278841_279906_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|280057_282685_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|282748_285370_+	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|286297_286756_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|287034_289278_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|289474_291499_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|291622_292585_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|292796_293936_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|293958_294924_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|295119_296310_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|296323_296569_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|296597_298619_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|298665_300273_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|300373_301543_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929591.1|304424_305375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|305398_306457_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|306531_306906_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|307460_308411_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|308509_309460_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995443.1|309446_309587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929833.1|311016_311862_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|311949_313113_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|313531_314503_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|314541_315969_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|316088_316880_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|316998_319452_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_003816023.1|319546_320662_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
WP_010929554.1|320658_322068_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|322473_322608_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|322703_323075_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|323071_323344_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|323392_325084_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|325314_326265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	508629	626524	4102575	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
WP_005012067.1|508629_509580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|509678_510629_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|511351_512626_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|512712_513795_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|513805_514618_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|514654_514981_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|514985_515546_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|515786_516779_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|516797_517793_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|517808_519185_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|519177_521559_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|521575_521965_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|522091_522322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|522426_523377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|523475_524426_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|524422_525295_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|526225_527512_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|527565_528492_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_003815179.1|528510_528975_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|529817_530609_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|530640_531261_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|531257_531887_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|531899_532508_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|532504_533494_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|533599_534814_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|536765_537716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|539149_540436_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|540601_540910_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|540910_541576_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|541616_543407_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|543519_544380_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|544376_545582_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|545578_546463_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|547979_548414_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|548376_549375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|549486_550632_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|550706_552035_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|552068_552659_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|552948_553743_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|554912_555647_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_076879643.1|555653_556481_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|556527_558303_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|558345_558843_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|559139_560090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|560188_561139_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|561479_562430_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|564753_565902_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003817794.1|565946_566609_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|566722_567715_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|567711_568449_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|568528_569350_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|569438_570302_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|570428_570665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|572639_573674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|573732_574710_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|574717_575638_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|575634_577335_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|577337_578243_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|578286_579420_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|579548_580499_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|580597_582667_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|582709_584812_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|585118_586195_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|586270_587155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|587337_587760_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|587769_589170_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|589212_590118_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|590216_591758_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|591792_592332_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|592344_592815_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|592952_593195_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|593311_594193_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|594265_594586_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|595437_596388_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|597711_598488_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|598522_600295_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|600296_601199_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|601323_601683_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|601714_602677_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|602775_603726_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|603738_604674_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|604733_605573_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|605569_606739_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|606735_608025_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|608067_608442_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|608547_609285_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|609292_609997_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|610260_611781_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|611836_612400_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|612418_613450_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|613446_614235_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|614410_615400_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|617156_618107_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|619329_620232_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|620233_621088_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|621134_622244_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|622254_622773_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|622802_623435_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|623506_624166_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|624162_625383_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|625651_626524_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	630938	695820	4102575	tRNA,transposase	Pandoravirus(12.5%)	52	NA	NA
WP_010931363.1|630938_631955_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|632226_632853_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|632908_634036_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|634041_639759_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814281.1|640042_640258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814277.1|640326_641271_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|641459_642395_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|642512_644084_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|644163_645372_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|645869_646787_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|649147_649369_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|649699_650716_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|650800_651052_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|651055_651871_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|651983_652862_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|652973_654737_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|654852_656193_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|657262_658687_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|658686_659388_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|660892_661843_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931358.1|661911_662910_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|662914_663595_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|663732_664125_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|664232_665249_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|665488_666274_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|666368_667778_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|667788_668589_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|668609_669380_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|669422_669890_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|669886_670837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013039.1|671744_671933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|671919_672870_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|673834_674713_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|675639_678618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080501793.1|678571_678985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|678971_679922_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|679918_681007_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|681042_681906_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|683045_683435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|683438_684221_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_033446332.1|684254_685007_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|685315_686455_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|686451_687243_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|687239_687989_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|687985_688858_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|688857_689859_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|689855_691019_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|691044_691728_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|691681_693016_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|693008_694103_+	CoA transferase	NA	NA	NA	NA	NA
WP_153302791.1|694706_694883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|694869_695820_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	714731	792040	4102575	tRNA,transposase,protease,integrase	Bacillus_phage(20.0%)	59	761868:761886	781756:781774
WP_010929956.1|714731_715682_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996329.1|715668_715818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931335.1|715780_717256_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|718843_719731_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|719733_720675_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|720720_722286_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274099.1|724063_725347_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|725571_727029_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_010931329.1|726992_727496_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	2.4e-24
WP_010931328.1|727520_728492_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|728544_728982_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|729105_729774_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|730502_731606_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|731711_732986_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|732997_734023_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|734024_735395_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|735395_736532_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|736578_738504_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|738500_739622_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|739618_740773_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|740769_741900_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|741907_743473_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|743479_744862_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|745140_745752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|745843_747259_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|747276_747987_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|747983_749306_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|749385_751347_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|751472_752786_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|752894_754193_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|754375_755284_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|755293_755503_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|755514_757194_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|757295_758249_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|758339_759167_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|759165_761052_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|761048_761648_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|761696_762596_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
761868:761886	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_077274098.1|762822_763755_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	36.0	2.7e-42
WP_029443719.1|763877_764492_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_029443720.1|764569_765217_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|765213_765996_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|766068_767160_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|767439_768567_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|768908_769955_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|770102_773222_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_023994585.1|773223_776175_+	DNA methylase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_059232558.1|776190_777402_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|777398_777599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|777585_778536_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|778552_779047_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|779050_779308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853401.1|779332_780763_+	ATP-dependent helicase	NA	NA	NA	NA	NA
WP_029443992.1|780844_781129_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|781912_782863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
781756:781774	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|783281_785846_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|785890_787744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|788076_789648_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|791089_792040_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	911307	975141	4102575	tRNA,transposase,protease	Pseudomonas_phage(30.0%)	58	NA	NA
WP_005012067.1|911307_912258_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931247.1|912356_913220_-	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_010931246.1|913216_914116_-	TonB family protein	NA	NA	NA	NA	NA
WP_014486102.1|914153_916037_-	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931244.1|916108_916702_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003814955.1|916712_918083_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_023853327.1|918165_918714_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814953.1|918792_919227_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_003814952.1|919316_919766_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814951.1|919775_921122_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010931242.1|922087_923185_+	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|923196_924138_+	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931240.1|924310_924814_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_003814943.1|925094_925334_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_003814941.1|925359_926487_+	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814939.1|926483_926609_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931239.1|926616_927744_+	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_010931238.1|927754_929218_+	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931237.1|929225_929801_-	YggT family protein	NA	NA	NA	NA	NA
WP_010931236.1|929939_930467_-	histone	NA	NA	NA	NA	NA
WP_003814929.1|930784_931981_-	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931235.1|932002_934930_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_019247415.1|935235_938298_-	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_003814925.1|938859_939312_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023998238.1|939513_940023_+	lipoprotein	NA	NA	NA	NA	NA
WP_010931233.1|940091_941279_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814917.1|941282_942728_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931231.1|942824_945284_+	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|945280_946231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879584.1|946217_946436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931230.1|946329_947004_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931229.1|947300_948797_+	membrane protein	NA	NA	NA	NA	NA
WP_003820592.1|948913_950302_+	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_003820593.1|950407_950797_+	VOC family protein	NA	NA	NA	NA	NA
WP_003820594.1|950808_951501_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_010931228.1|951515_952352_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931227.1|952354_953164_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931226.1|954420_955095_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853313.1|955108_955660_-	ribosome-associated protein	NA	NA	NA	NA	NA
WP_004567741.1|955718_957083_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_004567739.1|957424_958522_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010927106.1|958817_959246_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_010931224.1|959255_959648_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_003820599.1|959836_960901_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931223.1|960937_961684_+	membrane protein	NA	NA	NA	NA	NA
WP_003814883.1|961771_962143_+	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931222.1|962212_963349_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_010931221.1|963354_964770_-	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_005012067.1|964861_965812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|965910_966861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995983.1|966847_967006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814877.1|967128_968358_+|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003820605.1|968393_969050_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814873.1|969269_970517_+	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003814871.1|970674_971157_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_023853315.1|972151_972715_-	isochorismatase family protein	NA	NA	NA	NA	NA
WP_047122802.1|972920_974045_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_005015810.1|974190_975141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	1048427	1141415	4102575	transposase	Bacillus_virus(27.27%)	88	NA	NA
WP_005012067.1|1048427_1049378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1049480_1050143_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1050237_1050408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1050760_1051762_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1051764_1052961_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1052981_1053785_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1053865_1054162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1054192_1054756_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1054796_1055654_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1055661_1056411_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1056432_1057305_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1057333_1058113_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1058146_1058944_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014486092.1|1060395_1061568_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
WP_003808978.1|1061598_1061991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1061984_1062845_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1062848_1063811_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1064587_1065277_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1066137_1067088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1067437_1068307_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1068377_1069073_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1069062_1069572_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1069568_1070789_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1070736_1071639_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1072525_1073812_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1073850_1075224_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1075262_1075964_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1076262_1077252_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1077352_1077814_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1077829_1078378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1078519_1079995_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1080100_1081192_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1081195_1081978_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1081987_1082776_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1083901_1084336_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1084332_1085343_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1085386_1086313_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1086599_1086968_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1087020_1087167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1087184_1088135_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1088179_1090606_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1090654_1091347_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1091419_1092619_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1092636_1093542_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1093657_1094587_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1094612_1095959_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1095986_1096736_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1096749_1097532_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1097724_1098675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879583.1|1098736_1099882_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1100358_1101195_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1101264_1102230_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1102226_1103177_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_124740747.1|1103163_1103370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1103562_1104105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1105140_1106091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1106332_1106701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1106746_1107871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1109005_1109746_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1109849_1110470_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1110573_1111524_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1111520_1113629_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1113773_1114433_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1114464_1114929_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1115204_1115390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1115441_1116194_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1116200_1117463_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1117504_1118743_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1119820_1120948_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1120958_1121786_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1121772_1122639_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1124005_1124410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1124772_1125684_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1125698_1126409_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1126405_1127650_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1127651_1128086_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1128114_1128420_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_076879633.1|1128313_1128532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1128518_1129469_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1129525_1130674_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1130754_1131705_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1132236_1133034_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1133081_1133735_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1133691_1134780_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1134944_1137170_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1139447_1140344_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_076879632.1|1140232_1140478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1140464_1141415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	1171801	1242770	4102575	protease,transposase	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_005012808.1|1171801_1172752_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1172808_1173921_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1176304_1177255_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1177844_1178621_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1178738_1179002_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1179102_1180107_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1180307_1181909_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1181934_1182693_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1182784_1183441_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1183531_1184296_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1184305_1184494_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1184549_1185593_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1185589_1186003_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1185999_1186620_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186900_1187851_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1188018_1189410_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1189482_1190061_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1190177_1191575_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1191690_1192896_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1192995_1193514_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1193608_1193854_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1194081_1194396_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1194485_1199675_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1199671_1201840_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023995053.1|1201859_1204211_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_003820402.1|1204215_1205535_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1205553_1207227_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1207231_1207900_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1208056_1211878_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1212032_1212191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1212208_1213159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1213180_1214326_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1214474_1215404_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1215400_1216489_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1216485_1217289_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1217285_1218017_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1218074_1219364_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1219460_1220063_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1224615_1224954_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1225661_1225928_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1227634_1228585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1228581_1229913_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247695.1|1231152_1233174_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1233166_1233808_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1233804_1234212_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1234208_1235009_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1235083_1235788_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1235819_1236614_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1236610_1237561_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1237659_1238610_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1238708_1239143_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1239225_1241562_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1241753_1242770_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	1258965	1315672	4102575	tRNA,transposase	Agrobacterium_phage(20.0%)	43	NA	NA
WP_005012067.1|1258965_1259916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931084.1|1260018_1260603_+	nitroreductase	NA	NA	NA	NA	NA
WP_003812010.1|1260672_1262094_-	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931083.1|1262201_1263548_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_010931082.1|1263586_1265221_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_003812004.1|1265264_1265603_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931081.1|1265627_1266002_-	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003811986.1|1269114_1269996_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931080.1|1270103_1271732_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010931079.1|1271773_1273291_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247679.1|1273385_1274330_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813309.1|1275511_1276414_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_003813306.1|1276410_1277676_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813303.1|1277720_1278266_+	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813302.1|1278299_1278986_+	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_010931077.1|1278957_1279887_-	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813298.1|1280058_1281048_+	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931076.1|1281112_1281397_+	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813293.1|1281412_1282177_+	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931075.1|1282173_1282680_+	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_010929591.1|1283841_1284792_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|1284879_1286532_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1286542_1287331_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1287330_1287801_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1287875_1289189_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1289242_1289848_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010927663.1|1290164_1291115_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1291111_1292062_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1292160_1293111_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879546.1|1293097_1293448_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931069.1|1293371_1294400_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1294479_1295778_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1295774_1296356_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1296668_1300715_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1300955_1308617_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1308613_1309564_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1310703_1311177_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1311316_1311937_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1312072_1312873_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1312927_1314019_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1314040_1314484_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1314512_1315145_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1315255_1315672_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
>prophage 12
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	1344039	1401249	4102575	transposase	Klosneuvirus(16.67%)	53	NA	NA
WP_010931070.1|1344039_1344990_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1348736_1349348_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1349570_1351031_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1351127_1352720_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_076879563.1|1352706_1352985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931039.1|1353043_1353331_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1353332_1354673_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1354768_1355458_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1355470_1356901_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1358625_1359447_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1359457_1361029_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1361057_1362035_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1362061_1362865_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1362861_1363656_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1363663_1364899_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1364891_1365326_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1366075_1367026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1367647_1369375_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1369486_1370845_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_076879564.1|1370965_1371151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1371137_1372088_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1372128_1373199_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1373221_1374100_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1374271_1375243_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1375405_1376248_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1376409_1377090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1377083_1378253_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1378249_1379281_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1379324_1380566_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1380600_1382133_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1382213_1382837_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1382867_1383479_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1383514_1383985_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248146.1|1384159_1384408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248147.1|1384415_1385420_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1385456_1386971_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1386974_1387934_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1387962_1388766_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1388767_1390402_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1390485_1391547_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1391745_1392015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1392018_1392543_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1392958_1393909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994671.1|1393905_1394976_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1395048_1395687_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1395981_1396209_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1396331_1397045_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1397289_1398240_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302789.1|1398226_1398391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931009.1|1398343_1398625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1398739_1400188_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_155120812.1|1400165_1400312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1400298_1401249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	1491482	1553531	4102575	tRNA,transposase	Salmonella_phage(22.22%)	56	NA	NA
WP_005013747.1|1491482_1492433_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219858.1|1492419_1492587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1492599_1492953_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1492965_1493328_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1493369_1493795_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1493997_1495254_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1495452_1496433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1496582_1497824_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1497922_1498873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1498881_1499577_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1502397_1502997_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1503007_1505173_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1505196_1506981_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1506980_1507070_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1507764_1508037_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1508036_1510103_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1510099_1511050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1511148_1512099_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1512214_1512547_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1512543_1513230_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1513216_1514176_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1514217_1516578_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1516577_1517210_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814028.1|1517272_1518652_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1518698_1520054_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814025.1|1520332_1520581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1520768_1521086_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1521358_1521874_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1521967_1522129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1522144_1522900_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1523238_1523445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1523452_1524112_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1524406_1526611_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1526721_1527945_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1528067_1529042_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1529109_1530303_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1530317_1531118_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1531114_1532971_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1532967_1533573_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1533591_1534977_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1535702_1536929_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1537017_1537800_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1537898_1538849_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1538875_1539649_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1539660_1540902_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930938.1|1542718_1543546_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_010930937.1|1543547_1544258_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003821345.1|1544254_1544854_-	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930936.1|1544962_1545556_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003813827.1|1545607_1545790_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930929.1|1547532_1548417_+	signal peptidase I	NA	NA	NA	NA	NA
WP_003813785.1|1548413_1549184_+	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.2e-20
WP_003813784.1|1549180_1550071_+	GTPase Era	NA	NA	NA	NA	NA
WP_010930928.1|1550063_1550651_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_010930927.1|1550655_1551591_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853254.1|1551587_1553531_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	1673678	1737256	4102575	protease,transposase	Klebsiella_phage(11.11%)	50	NA	NA
WP_005012808.1|1673678_1674629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122786.1|1674615_1674831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930866.1|1681107_1683855_+	autotransporter Vag8	NA	NA	NA	NA	NA
WP_010930865.1|1683875_1684499_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_003813199.1|1684510_1684981_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_003813196.1|1684992_1685379_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_010930864.1|1685440_1686034_-	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_010930863.1|1686024_1686936_-	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_003813189.1|1686951_1688325_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930861.1|1688359_1689091_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930860.1|1689167_1690766_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.8e-78
WP_010930859.1|1690826_1692182_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_076879554.1|1692216_1693542_-	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930857.1|1693723_1694656_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_010930856.1|1694666_1696160_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930855.1|1696156_1697080_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930854.1|1697082_1698345_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_047122810.1|1698364_1699378_-	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_077274083.1|1699450_1699774_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930851.1|1699770_1701045_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_023996112.1|1701057_1701201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1701187_1702138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930850.1|1702134_1703772_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_003813165.1|1703776_1704616_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930849.1|1704612_1705629_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930848.1|1705736_1707311_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930847.1|1707730_1709275_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930846.1|1709379_1710447_+	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930845.1|1710465_1712052_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_023853651.1|1712048_1713263_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003813149.1|1714811_1715300_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813147.1|1715359_1716217_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930843.1|1716279_1717230_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930842.1|1717292_1718282_+	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813142.1|1718356_1719238_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930841.1|1720295_1721147_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010930840.1|1721163_1721733_-	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930839.1|1721763_1722627_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930838.1|1722786_1723863_+	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_029443740.1|1723927_1725625_+	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003820286.1|1725641_1726472_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_010930836.1|1726500_1727523_+	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1728052_1729003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1729101_1730052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852827.1|1730048_1731371_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_004568205.1|1731471_1731789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809610.1|1731922_1733236_+	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_019247142.1|1733266_1734904_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809615.1|1735527_1736004_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_010931070.1|1736305_1737256_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	1776369	1824384	4102575	tRNA,transposase	Moraxella_phage(16.67%)	44	NA	NA
WP_010930522.1|1776369_1777320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1777418_1780019_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1780125_1781130_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1781238_1782579_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1782619_1783648_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1783843_1784389_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1784385_1784946_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1785044_1785995_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1786032_1786620_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1786637_1787021_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1788380_1789673_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1789807_1790848_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1790945_1791962_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1792229_1792877_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1793002_1793761_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_077274094.1|1793835_1794525_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_003811022.1|1794542_1795427_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1795423_1796203_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1796229_1796907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1797195_1797948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1798066_1799467_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1799490_1799889_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1800064_1800265_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1800403_1801132_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1801265_1802681_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1802684_1803548_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1803560_1804310_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1804492_1806508_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_029443816.1|1806489_1807038_-	arylesterase	NA	NA	NA	NA	NA
WP_077274081.1|1807114_1807834_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_005012067.1|1807932_1808883_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1808981_1809932_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1810080_1810419_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1810476_1810638_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1810669_1810870_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1811135_1813709_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930534.1|1813779_1816353_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1818879_1819368_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1819459_1820611_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1820664_1821486_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1821524_1822754_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1822882_1823323_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_077068996.1|1823267_1823447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1823433_1824384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	1885946	1945215	4102575	tRNA,transposase,protease	Klosneuvirus(40.0%)	52	NA	NA
WP_005013747.1|1885946_1886897_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1887021_1887831_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_153302779.1|1887886_1888045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|1888031_1888982_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1890255_1891473_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1892528_1893431_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1893507_1894380_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1894510_1894879_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1894936_1895983_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1896178_1897435_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1897439_1898777_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1898926_1899883_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1899985_1900918_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1901033_1901354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930580.1|1901355_1901706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1901753_1903328_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1903380_1904325_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1904342_1905173_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1905165_1906800_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1906796_1908152_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1909058_1910636_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1910639_1911914_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1912011_1912386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1914101_1915235_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1915272_1915878_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1915874_1916693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1916764_1919389_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1919375_1919630_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1919696_1920278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1920581_1920842_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1921007_1921631_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1921630_1922404_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1922400_1923609_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1923634_1924108_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1924181_1925132_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1925230_1926181_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1926279_1927629_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1928394_1929150_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1929242_1932125_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1932447_1932873_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1932900_1934049_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1934045_1934552_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1934558_1935854_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_010930792.1|1935894_1937199_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1937200_1937839_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1937841_1939002_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1939028_1940384_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1940387_1941458_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1941596_1941833_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1941920_1943027_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1942992_1944297_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1944315_1945215_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	1955455	1999778	4102575	transposase	Staphylococcus_phage(25.0%)	46	NA	NA
WP_005013747.1|1955455_1956406_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1956504_1957455_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879573.1|1957441_1957642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930782.1|1957654_1958740_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1958755_1959517_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1959513_1960437_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1960535_1961060_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1961068_1961812_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1961907_1962147_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1962160_1962313_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1962398_1963889_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1963980_1964919_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1964915_1965092_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1965094_1965757_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1967378_1967522_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1967518_1968493_-	membrane protein	NA	NA	NA	NA	NA
WP_153302783.1|1968529_1968673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1968659_1969610_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1969606_1970881_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_076879572.1|1970978_1972178_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1972174_1972828_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1972824_1974261_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1974248_1974608_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1975580_1976531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1977576_1979442_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1979699_1981220_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1981307_1981958_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1982906_1984202_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1984223_1985108_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1985206_1986082_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1986071_1986428_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_076879571.1|1986501_1987533_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1987662_1987842_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1987939_1988464_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1988474_1989311_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1989423_1989795_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1989791_1990343_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1990358_1992050_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1992098_1992779_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1993026_1993491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1993660_1994590_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1994602_1995250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1995323_1997141_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1997224_1998175_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|1998679_1998841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|1998827_1999778_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	2029551	2093920	4102575	transposase	Vibrio_phage(20.0%)	52	NA	NA
WP_005013747.1|2029551_2030502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|2030488_2030680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|2030723_2031674_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2031772_2032738_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2032875_2033775_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2036369_2037857_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2037867_2039064_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2039136_2040456_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2040452_2041328_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443721.1|2041358_2042528_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2042524_2042839_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2042860_2043583_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2043582_2044401_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2044405_2044933_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_029443722.1|2044938_2046204_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2046553_2047693_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2047770_2048643_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2049513_2050464_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2050423_2051059_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2051418_2052741_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_015041331.1|2052969_2053881_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_003810356.1|2055305_2055878_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2055917_2057747_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2057709_2058768_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2058805_2059267_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2059351_2060098_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2061588_2064819_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2064885_2066217_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2066469_2066844_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2066946_2068125_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2068135_2068726_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2068836_2069643_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930719.1|2069668_2070463_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2071463_2072438_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2072596_2073109_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2073265_2074237_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2075981_2076788_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023996008.1|2076784_2077921_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2078036_2078801_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2078914_2079685_-	spermidine synthase	NA	NA	NA	NA	NA
WP_076879569.1|2079769_2080981_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2081029_2081404_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2081504_2082767_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2082763_2083621_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2083793_2084795_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2085246_2086197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2087712_2088912_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2089280_2089517_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2089580_2089748_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2089861_2091757_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2091920_2092871_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2092969_2093920_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	2280385	2341733	4102575	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2280385_2281336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2281452_2282172_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2282344_2283331_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2283331_2283814_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2283817_2285101_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2285097_2286036_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2286032_2287742_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2287751_2288999_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2290609_2291899_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2293036_2293810_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2294471_2295215_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2295289_2296030_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2296225_2297062_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2297112_2297883_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2297932_2298985_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2298981_2299608_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_077274084.1|2299604_2300651_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2300817_2301834_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2301932_2302883_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2305623_2306913_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810870.1|2307031_2307502_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2307512_2308721_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2308867_2309332_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2309355_2310306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2311290_2312064_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2312060_2313059_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2313143_2313920_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_076879556.1|2314075_2315743_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
WP_003816541.1|2316060_2317185_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2317311_2317935_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2317931_2319833_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2319881_2320676_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2320688_2321690_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2321686_2322193_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2322185_2323034_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2323131_2323674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2323717_2324668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2324823_2325150_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2325146_2325431_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2325427_2325907_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2325903_2327532_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2327528_2327873_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2327872_2330806_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2331964_2332915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2333013_2333310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2333416_2334334_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2334338_2335052_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2335065_2336037_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2337756_2338137_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2338140_2339328_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2339766_2340489_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2340782_2341733_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	2362524	2433677	4102575	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2362524_2363475_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2364027_2365653_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2365702_2366737_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2366739_2368086_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2368082_2369597_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2369587_2370598_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2371071_2372013_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2372021_2372990_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2374529_2375498_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2375675_2376665_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2376711_2377470_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2377659_2378397_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_153302777.1|2378347_2378509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2378495_2379446_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2379630_2380413_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2380406_2381108_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2381347_2381950_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154219857.1|2383134_2383290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2383276_2384227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2384223_2385780_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2385772_2386546_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2386604_2387555_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2387636_2388812_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2388825_2390883_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2390879_2391905_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2391916_2393206_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2393228_2394326_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2394322_2395213_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2395209_2397294_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2397325_2398495_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2398536_2399277_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2399276_2400047_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2400902_2401688_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2401714_2403799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2403966_2405922_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2406245_2406746_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2406844_2408371_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2408508_2409396_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2409410_2410364_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2410415_2412506_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2412521_2412908_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2415601_2416405_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2417698_2418601_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2418665_2419442_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2419763_2420813_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2420936_2422607_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2422611_2423406_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2423504_2424455_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2424474_2425380_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2425457_2426156_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811170.1|2427268_2428759_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2428755_2429823_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2429886_2431299_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2431484_2432705_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2432726_2433677_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	2530554	2589335	4102575	tRNA,transposase	Planktothrix_phage(28.57%)	50	NA	NA
WP_003812608.1|2530554_2532504_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2532891_2533668_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2533673_2534066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2534487_2535438_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2535434_2536532_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2536563_2537514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2539295_2540537_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2540548_2541322_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2541348_2542299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2542778_2543435_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2543449_2545117_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2545119_2545749_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2545960_2547055_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2547199_2548012_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2548015_2549719_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2549769_2550900_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2551086_2552163_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2552244_2552895_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_023853504.1|2552909_2554343_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2554596_2555415_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2555411_2556116_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2557015_2558131_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2558164_2558539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2558561_2559719_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2559731_2559965_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2560599_2563569_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2563583_2563793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2563944_2564574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029443766.1|2564570_2566688_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_010930372.1|2566684_2567365_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2567361_2567922_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2567928_2569026_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_077274082.1|2569163_2569772_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2569768_2571061_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2571074_2571617_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2571626_2572463_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2572496_2573558_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2573599_2574652_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2574667_2574970_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2575111_2576062_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996304.1|2576048_2576207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2576240_2577935_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2577931_2579017_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2579064_2579964_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2579974_2580619_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2581640_2584883_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_010930365.1|2584893_2585991_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_003819864.1|2586253_2587237_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_005013747.1|2587335_2588286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2588384_2589335_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	2641872	2708372	4102575	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2641872_2642823_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2643192_2643765_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2643767_2644778_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2644770_2645271_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2645281_2645623_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2645634_2646426_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2646442_2646712_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2646734_2647523_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2647569_2648586_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2648802_2650245_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2650423_2652043_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2652163_2653984_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2654062_2655595_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2655628_2657275_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2657344_2658367_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2658384_2659518_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2659520_2660210_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2660209_2660995_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2661038_2661803_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2661841_2663263_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2663328_2664033_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2664080_2664500_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2664512_2664920_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2665103_2665814_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2665940_2666231_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2666248_2666731_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2671236_2672391_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2672696_2673713_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2673959_2674748_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2674814_2675495_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2675491_2676262_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2676360_2677311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2677366_2678284_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2678294_2679473_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2679492_2680488_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2682076_2682685_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2682672_2683713_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2683730_2684693_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2684689_2685883_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2685879_2686677_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2686702_2687689_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2687707_2689747_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2689948_2690629_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2690642_2691554_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2691550_2692129_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2692267_2693173_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2693180_2696600_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2696587_2699188_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2700143_2700776_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2701169_2701928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2701924_2703127_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2703314_2704265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2705172_2706318_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930309.1|2706337_2707060_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2707176_2707356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2707421_2708372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	2890775	3042422	4102575	tRNA,transposase,holin	uncultured_Mediterranean_phage(15.79%)	120	NA	NA
WP_010929956.1|2890775_2891726_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2891824_2892706_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2892783_2894163_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2894201_2895047_-	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|2895062_2895407_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2895409_2895946_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2896118_2896694_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2896796_2897534_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2897601_2899239_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2899346_2900102_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2900089_2901052_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003813594.1|2901153_2901954_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2902015_2904091_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2904255_2906631_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2906711_2908067_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2909545_2910268_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2910322_2911306_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2911435_2912386_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2912382_2913285_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2913372_2914131_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248962.1|2914143_2915292_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2915332_2916760_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2916989_2918204_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2918249_2921120_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2923530_2924019_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2924144_2926841_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2926995_2929278_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2929441_2930074_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2930172_2931123_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2931169_2931724_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2931791_2932637_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2932706_2933675_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2933674_2935471_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|2937370_2941297_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930195.1|2941587_2941764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930194.1|2942032_2945263_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2945544_2946372_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2946405_2947101_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2947093_2948374_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2948383_2949361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2949342_2951043_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2951145_2952249_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2952279_2953035_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2953041_2954562_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2954604_2954907_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2954903_2955536_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2955614_2957480_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_010930187.1|2957476_2958292_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
WP_010930186.1|2958299_2959415_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2960319_2961198_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2961197_2962022_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2962189_2963140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879621.1|2963322_2966202_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003812697.1|2966183_2966960_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2967052_2968516_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2968512_2968884_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2968901_2970215_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2970251_2970710_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2970664_2970805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2970822_2971773_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2971769_2972783_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2972922_2973909_+	homoserine kinase	NA	NA	NA	NA	NA
WP_010930177.1|2973952_2974753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2975555_2976506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995509.1|2976492_2976654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809618.1|2976657_2977260_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2977278_2977911_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930174.1|2978148_2980035_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2980053_2980896_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2980892_2982251_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2982471_2983266_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2983496_2984990_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2985225_2987307_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2987501_2988542_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2988676_2989693_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2989714_2990572_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2990616_2991393_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_154698393.1|2991605_2991743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2991760_2992711_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2992737_2993202_-	barstar family protein	NA	NA	NA	NA	NA
WP_010930165.1|2996812_2997685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2997727_2998882_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2998916_2999747_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2999830_3001375_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|3001417_3001777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|3001778_3002192_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|3002232_3002550_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|3002634_3003351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|3003614_3005036_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_157772374.1|3006210_3006354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3006340_3007291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930158.1|3009231_3010248_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|3010584_3011226_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|3011316_3012753_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|3012910_3013984_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|3013980_3015117_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|3015261_3015606_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|3015672_3017553_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3017602_3018538_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|3018870_3019887_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3020824_3022252_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3022248_3023271_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3023260_3023734_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_023995116.1|3023859_3024762_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3024758_3026402_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|3026398_3027406_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|3028236_3029253_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3029352_3029985_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3029993_3030383_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3030435_3031488_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|3032351_3034058_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3034131_3034632_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3034646_3036704_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3036730_3037024_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3037125_3038073_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3038085_3038961_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3039081_3039642_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3039676_3040000_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3040435_3041173_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3041471_3042422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	3050632	3112793	4102575	transposase	Erysipelothrix_phage(20.0%)	46	NA	NA
WP_023853531.1|3050632_3051766_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443834.1|3051803_3052511_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3052665_3055014_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3055010_3055949_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3055974_3057165_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3057161_3057935_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3057964_3059158_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3059275_3060286_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3060303_3062340_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3062534_3063275_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|3063373_3064324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|3064422_3065373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3065415_3066591_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3066812_3068603_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3068615_3070277_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3070289_3072995_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3073287_3075042_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3075038_3075665_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3075661_3076513_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3076588_3078703_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_023853098.1|3078853_3079504_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3079649_3079901_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3079970_3081353_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3081349_3084529_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3085336_3086254_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3086305_3087037_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3087096_3087669_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010931363.1|3089177_3090194_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3090331_3091381_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929591.1|3091485_3092436_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3092531_3093257_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3093467_3093848_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3094153_3095026_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3095033_3095414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3095567_3096842_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3098329_3099238_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3100035_3101100_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3102942_3103977_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3104166_3104808_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3104890_3106717_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3106960_3107890_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3107889_3108639_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3108710_3109625_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3109644_3110790_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3110850_3111762_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3111842_3112793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	3132215	3187345	4102575	transposase	Bacillus_phage(28.57%)	51	NA	NA
WP_005012808.1|3132215_3133166_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3133295_3133688_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3133964_3134876_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3135000_3135975_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3135971_3136922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3137020_3138106_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3138203_3138614_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3139229_3141143_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3141278_3143891_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3143892_3144627_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3144790_3145972_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3145968_3146181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3146177_3147158_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3147203_3148031_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930067.1|3148177_3149995_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3150049_3150433_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3150429_3151380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3151492_3151744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3151937_3152153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3152249_3153368_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3153487_3153700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3153859_3154081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3154133_3155084_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995501.1|3155070_3155208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930062.1|3156260_3157631_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3157663_3158455_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3158467_3159523_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3159548_3160424_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3160529_3160778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3160812_3162267_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3162263_3162785_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3162813_3164166_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3164389_3167278_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3169422_3170724_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3170738_3171455_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3171736_3172417_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3172428_3172596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930053.1|3172704_3172857_-	vir-repressed protein	NA	NA	NA	NA	NA
WP_010930052.1|3172944_3173604_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_019248601.1|3173984_3175835_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3175831_3176782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3177945_3179661_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3179671_3180163_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3180235_3181252_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3181419_3182199_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3182217_3182745_-	lipoprotein	NA	NA	NA	NA	NA
WP_005019401.1|3182743_3182950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814002.1|3183038_3183308_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3183398_3185558_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3185678_3186398_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3186394_3187345_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	3268405	3337408	4102575	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3268405_3269356_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3269352_3270372_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3270381_3273090_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3273237_3273894_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_154219863.1|3273853_3274006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3273992_3274943_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930014.1|3275048_3275984_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3276183_3277878_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3277912_3278839_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3278907_3280005_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3280023_3280887_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3280898_3281681_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3281677_3282796_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3282792_3284325_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3284365_3285373_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3285517_3286240_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3286255_3287278_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3287594_3288329_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3288413_3290159_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3290155_3290908_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3290952_3291909_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3291997_3292564_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3292571_3293432_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_010930001.1|3293461_3294205_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
WP_003807497.1|3294221_3294905_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3295742_3296657_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3296721_3297630_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3297720_3299145_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3299146_3300469_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3300465_3302604_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3302681_3307802_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3307902_3308211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3308280_3308838_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3308853_3310335_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3310389_3312243_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3312505_3313843_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3313877_3315875_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3315892_3317941_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3318071_3318938_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3319206_3320172_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3320286_3321435_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3321859_3322171_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3322204_3322465_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3322614_3323748_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3323818_3324955_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3325120_3325915_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3325977_3326421_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3326536_3327487_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068980.1|3327473_3327662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020699729.1|3327609_3328017_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3328089_3330285_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3330506_3331457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3331416_3331941_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3332072_3333044_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3333163_3335608_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3335623_3336214_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3336457_3337408_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	3352854	3452967	4102575	transposase,protease,tRNA,terminase,tail	uncultured_Caudovirales_phage(13.79%)	111	NA	NA
WP_005012067.1|3352854_3353805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3354536_3354914_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3354898_3355600_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3355743_3356436_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3356435_3357539_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3357648_3360021_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3360017_3361577_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3361601_3362399_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3362430_3363576_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3363680_3365123_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_003814416.1|3365125_3366214_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3368492_3369443_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879618.1|3369429_3369648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|3370572_3371130_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3371105_3371456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3371624_3372419_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3372415_3373465_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3373464_3374154_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3374240_3374738_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3374769_3376086_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3376102_3377077_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3377113_3377572_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3377571_3378252_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3378254_3378683_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3378735_3380466_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3380531_3381104_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3381084_3381771_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3382126_3382798_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010926433.1|3383347_3383629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076879540.1|3383625_3384159_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3384140_3384692_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3384670_3384913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3384917_3385730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3385729_3385993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3386033_3386231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3386211_3386628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3386632_3390589_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3390581_3390971_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3390967_3391501_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3391568_3391928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3391937_3394550_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3394575_3394866_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3394883_3395213_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3395222_3395741_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3395995_3396496_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3396503_3396926_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3396922_3397321_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3397317_3397713_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3397712_3397913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3397914_3398397_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3398459_3398711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853024.1|3398720_3399368_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_005012808.1|3399385_3400336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3400764_3401367_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3401489_3401732_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3401737_3402793_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3402821_3404240_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3404242_3405520_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931448.1|3405506_3405956_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_005012067.1|3406631_3407582_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3407599_3407821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|3407835_3408534_+	membrane protein	NA	NA	NA	NA	NA
WP_010931450.1|3408526_3408847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|3409326_3409938_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931452.1|3410003_3410216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3410467_3411418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3411516_3412590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3412757_3413552_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3413591_3414116_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3414108_3415851_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3416060_3416819_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3416821_3417529_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3417545_3418427_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3418437_3419196_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3419164_3419920_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3419989_3421408_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3421429_3422080_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3422213_3422549_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_023995786.1|3422489_3422651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|3422637_3423588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3423664_3425485_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3425489_3426563_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3426685_3427654_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3427727_3428639_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3428657_3429230_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3429310_3429859_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3429858_3431448_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3431517_3431757_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_003814219.1|3431797_3432829_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3432888_3434070_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3434166_3434619_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3434628_3435969_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3436285_3437323_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3437704_3438064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3438147_3439089_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3439163_3440114_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3440407_3441502_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3441583_3442465_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3442486_3443326_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3443401_3444919_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3445015_3446116_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3446132_3446555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814195.1|3446577_3446790_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3446836_3447757_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814191.1|3448020_3448689_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3448691_3449021_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3449227_3450661_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3450672_3451056_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3451117_3451918_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_154219861.1|3451865_3452030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|3452016_3452967_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	3613637	3668611	4102575	transposase	Lake_Baikal_phage(20.0%)	45	NA	NA
WP_005012067.1|3613637_3614588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3614704_3615772_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3615847_3618976_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3619483_3620449_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3620451_3621123_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3621279_3622239_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3622246_3622909_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3622905_3623856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995938.1|3623842_3624034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929806.1|3623977_3625231_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3625208_3626171_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_077274093.1|3626323_3626797_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3626796_3628029_+	dehydratase	NA	NA	NA	NA	NA
WP_019247316.1|3628774_3629056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3629042_3630029_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3630172_3630577_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3630718_3634105_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3634135_3635599_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929798.1|3635595_3637236_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_029443819.1|3637345_3637981_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3638010_3638451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3638961_3639165_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3639340_3640246_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3640344_3641295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3641393_3642344_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3644125_3645319_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3645384_3646413_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3646439_3647612_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814681.1|3647737_3648715_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3648725_3649697_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3649763_3650549_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3650541_3651774_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3651969_3652725_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3652835_3653354_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3655142_3656543_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3656642_3656987_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3657075_3657546_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3657956_3658355_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3658486_3659437_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3661881_3662616_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3663025_3663205_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3663395_3664709_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3664724_3666236_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3666232_3667438_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3667633_3668611_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	3758424	3874094	4102575	protease,transposase,tRNA	Bacillus_phage(12.5%)	105	NA	NA
WP_005013747.1|3758424_3759375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302769.1|3759361_3759511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814960.1|3759497_3760226_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_023852939.1|3760232_3761501_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3761497_3762331_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3762367_3763108_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3763227_3764403_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3764399_3765353_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3765366_3765768_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_019248876.1|3765760_3766438_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3766453_3766618_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3766734_3767583_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3767579_3768233_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3768249_3769533_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3769772_3771398_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3771491_3771893_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3771917_3772352_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3772353_3774003_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3774043_3775213_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|3775215_3776079_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3779442_3780147_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3780140_3780935_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3780931_3781897_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3781900_3782821_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3782917_3784081_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3784303_3785194_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3785197_3785701_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3785743_3786742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3786738_3787689_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3787777_3788065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154299516.1|3788111_3788270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3788256_3789207_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3789266_3789827_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3791329_3792211_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3792324_3793527_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3793655_3795515_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3795592_3796402_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3796472_3797474_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3797505_3798366_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3798565_3799570_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3799566_3801153_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3801161_3802088_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3802110_3802737_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3802835_3803786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3803782_3804919_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3804972_3805749_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3805773_3806232_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3806371_3807013_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3807077_3808460_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|3808479_3809334_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3809492_3810104_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_003815821.1|3810113_3810563_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|3811081_3811222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|3811229_3811391_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_077068974.1|3811466_3811682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3811668_3812619_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929717.1|3813662_3813941_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_085964336.1|3815083_3815659_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929715.1|3815694_3817374_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929714.1|3817370_3819122_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_003817696.1|3819118_3819244_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_004567834.1|3819257_3820412_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010929713.1|3820427_3822047_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010929712.1|3822130_3822676_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3823235_3824186_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3824916_3825897_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3825910_3827035_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3827042_3828797_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3828903_3829803_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3829867_3830851_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3830986_3831967_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3831983_3833375_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3833526_3834063_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3833993_3835379_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3835521_3836160_-	membrane protein	NA	NA	NA	NA	NA
WP_010929705.1|3836246_3838136_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3838132_3839074_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3839179_3840229_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3840481_3841183_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3841179_3841878_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3841878_3843234_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3843230_3843722_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3843740_3844697_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3846107_3848210_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3848380_3849424_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3849467_3850211_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3851232_3851643_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_010929700.1|3852592_3853390_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_153302767.1|3853328_3853502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930742.1|3853488_3854439_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3854435_3855386_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3855472_3856423_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3856537_3857539_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3857629_3858196_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3858514_3860428_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3860469_3861900_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3862012_3863425_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3863441_3864137_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_127013037.1|3864168_3864369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3864355_3865306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3865330_3866230_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3866384_3866933_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3866971_3867691_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|3867762_3870705_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3871298_3874094_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 30
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	3914507	3982333	4102575	tRNA,transposase	Bacillus_phage(22.22%)	60	NA	NA
WP_010929591.1|3914507_3915458_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068973.1|3915444_3915624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|3915664_3916141_+	bacterioferritin	NA	NA	NA	NA	NA
WP_010929663.1|3916222_3916906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815895.1|3916930_3918538_-	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929661.1|3918586_3919216_-	LysE family transporter	NA	NA	NA	NA	NA
WP_029443820.1|3919249_3920632_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_003815889.1|3920962_3921592_+	LemA family protein	NA	NA	NA	NA	NA
WP_010929659.1|3921569_3922472_+	YgcG family protein	NA	NA	NA	NA	NA
WP_005015810.1|3923915_3924866_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929658.1|3925424_3926987_-	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_023853232.1|3926983_3927619_-	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_010929656.1|3927847_3928870_-	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_003815111.1|3929035_3929812_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_003815113.1|3929975_3930674_+	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_010929655.1|3930685_3931996_+	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_010929654.1|3932051_3932729_+	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929653.1|3932725_3934123_+	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929652.1|3934228_3934690_+	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929651.1|3934773_3935994_+	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.2e-91
WP_010929650.1|3936045_3936921_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815126.1|3937022_3937454_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929649.1|3937478_3938207_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_010929648.1|3938203_3939184_+	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_003815135.1|3939950_3940733_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446330.1|3940899_3941823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247545.1|3941895_3942654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247546.1|3942672_3943116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817676.1|3943136_3943949_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929646.1|3943954_3944887_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_010929645.1|3944870_3946094_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929644.1|3946181_3946964_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247146.1|3947016_3950979_-	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003815155.1|3951725_3953234_+	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_155120810.1|3953522_3953666_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3953652_3954603_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929512.1|3955869_3956748_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815905.1|3956775_3957078_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_023853393.1|3957170_3958610_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_010929640.1|3958608_3959256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929639.1|3959682_3961383_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929638.1|3961473_3962727_-	amidase	NA	NA	NA	NA	NA
WP_019247800.1|3963620_3964010_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929637.1|3964006_3965017_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003815918.1|3965853_3966687_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_014905488.1|3966683_3967589_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_005012067.1|3967687_3968638_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929635.1|3968738_3969560_+	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929634.1|3969665_3970706_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929633.1|3970748_3972041_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815927.1|3972051_3972927_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003815929.1|3972923_3973724_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931363.1|3973799_3974816_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815930.1|3975098_3975416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815933.1|3975506_3975854_-	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|3976141_3977824_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010927242.1|3977833_3978517_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_010929628.1|3978578_3979208_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010929627.1|3979289_3980483_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929626.1|3981382_3982333_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP017923	Bordetella pertussis strain J148 chromosome, complete genome	4102575	4010156	4078178	4102575	transposase	uncultured_Mediterranean_phage(33.33%)	59	NA	NA
WP_041166334.1|4010156_4011101_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4011175_4012126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929607.1|4012122_4013532_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_010929606.1|4013637_4014480_+	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_003807805.1|4014481_4014733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807804.1|4014821_4015403_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_010929605.1|4015434_4016055_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010929604.1|4016216_4018124_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_003816713.1|4019316_4019631_-	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|4019724_4020675_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929603.1|4021096_4022278_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247832.1|4022907_4024179_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_029443770.1|4024213_4025272_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019248465.1|4025375_4025693_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010929599.1|4025705_4026287_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929598.1|4026481_4027318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929597.1|4027741_4028683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929596.1|4028866_4029286_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929595.1|4029285_4030512_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929577.1|4031312_4032263_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4032259_4033753_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4033749_4036857_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4036853_4039922_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4039918_4041169_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4041349_4042111_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4042143_4042794_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4042796_4043636_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4043876_4044620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4044702_4045050_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4045147_4045990_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4046034_4046922_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4046948_4047137_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4047234_4048692_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4048678_4050205_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4050223_4050691_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4050690_4051713_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4051833_4052574_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4052628_4053729_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4053730_4054921_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4055040_4056057_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4056375_4057047_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4057043_4057952_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4058163_4058811_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4062662_4063739_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4063749_4064559_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4064648_4065422_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023996063.1|4065441_4065618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4065604_4066555_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4066443_4067466_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4067455_4068610_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4068649_4070062_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931676.1|4070084_4071053_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4071054_4071879_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4071875_4072637_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4072717_4073404_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4073577_4074585_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4074581_4075361_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023853477.1|4075442_4076681_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4077227_4078178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
