assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002863845.1_ASM286384v1	NZ_CP022279	Escherichia coli strain STEC299 chromosome, complete genome	1	1509412-1509525	1	CRISPRCasFinder	no		RT,cas3,csa3,DEDDh,DinG,WYL,cas6f,cas7f,cas5f,cas8f,cas1	Orphan	TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	33	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,csa3,DEDDh,DinG,WYL,cas6f,cas7f,cas5f,cas8f,cas1	NA,NA	NA|74aa|up_9|NZ_CP022279.1_1498981_1499203_-	PRK09956, PRK09956, ISNCY family transposase	NA|304aa|up_8|NZ_CP022279.1_1499215_1500127_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP022279.1_1500319_1501510_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP022279.1_1501506_1502766_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP022279.1_1502755_1504384_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP022279.1_1504656_1506015_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP022279.1_1506019_1507096_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP022279.1_1507298_1507949_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP022279.1_1508002_1508257_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP022279.1_1508256_1509387_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP022279.1_1509576_1511862_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1253aa|down_1|NZ_CP022279.1_1512543_1516302_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP022279.1_1516441_1517164_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP022279.1_1517310_1519938_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP022279.1_1520086_1521775_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP022279.1_1521771_1522395_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|down_6|NZ_CP022279.1_1526933_1528583_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP022279.1_1528587_1529364_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP022279.1_1529437_1530622_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP022279.1_1530652_1531975_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_002863845.1_ASM286384v1	NZ_CP022279	Escherichia coli strain STEC299 chromosome, complete genome	2	2297696-2297819	2	CRISPRCasFinder	no	DEDDh	RT,cas3,csa3,DEDDh,DinG,WYL,cas6f,cas7f,cas5f,cas8f,cas1	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,csa3,DEDDh,DinG,WYL,cas6f,cas7f,cas5f,cas8f,cas1	NA,NA|30aa|down_7|NZ_CP022279.1_2306715_2306805_+	NA|471aa|up_9|NZ_CP022279.1_2287148_2288561_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP022279.1_2289118_2289328_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP022279.1_2289783_2290410_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP022279.1_2290430_2292533_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP022279.1_2292536_2293184_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP022279.1_2293247_2293916_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP022279.1_2293912_2294698_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP022279.1_2294701_2295514_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP022279.1_2295525_2297130_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP022279.1_2297255_2297561_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP022279.1_2298133_2299390_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP022279.1_2299430_2300804_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP022279.1_2301018_2301660_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP022279.1_2301699_2302848_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP022279.1_2303138_2304350_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP022279.1_2304462_2305395_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP022279.1_2305391_2306417_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP022279.1_2306715_2306805_+	NA	NA|390aa|down_8|NZ_CP022279.1_2306970_2308140_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP022279.1_2308285_2308867_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002863845.1_ASM286384v1	NZ_CP022279	Escherichia coli strain STEC299 chromosome, complete genome	3	2991085-2991176	3	CRISPRCasFinder	no		RT,cas3,csa3,DEDDh,DinG,WYL,cas6f,cas7f,cas5f,cas8f,cas1	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,csa3,DEDDh,DinG,WYL,cas6f,cas7f,cas5f,cas8f,cas1	NA,NA	NA|503aa|up_9|NZ_CP022279.1_2978667_2980176_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|1321aa|up_8|NZ_CP022279.1_2980598_2984561_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP022279.1_2984600_2985239_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP022279.1_2985527_2986619_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP022279.1_2986618_2987311_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP022279.1_2987322_2987709_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP022279.1_2987716_2988517_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP022279.1_2988526_2989117_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP022279.1_2989127_2989622_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP022279.1_2989642_2990971_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP022279.1_2991599_2992196_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP022279.1_2992216_2992444_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP022279.1_2992481_2993723_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|56aa|down_3|NZ_CP022279.1_2994003_2994171_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP022279.1_2994257_2995178_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP022279.1_2995177_2995483_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP022279.1_2995839_2996439_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP022279.1_2996435_2998982_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP022279.1_2998981_3000154_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP022279.1_3000293_3000986_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002863845.1_ASM286384v1	NZ_CP022279	Escherichia coli strain STEC299 chromosome, complete genome	4	3160562-3161071	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas1	RT,cas3,csa3,DEDDh,DinG,WYL,cas6f,cas7f,cas5f,cas8f,cas1	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	1	1	3161011-3161043	NZ_CP022280.1_112152-112120	I-F:I-F:I-F	8,8,7	8	TypeI-F	RT,cas3,csa3,DEDDh,DinG,WYL,cas6f,cas7f,cas5f,cas8f,cas1	NA,NA	NA|431aa|up_9|NZ_CP022279.1_3145876_3147169_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP022279.1_3147259_3148603_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP022279.1_3148613_3149225_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1356aa|up_6|NZ_CP022279.1_3149383_3153451_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP022279.1_3153585_3154080_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP022279.1_3154623_3155589_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP022279.1_3155711_3157478_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP022279.1_3157478_3159200_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP022279.1_3159241_3159946_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP022279.1_3160230_3160449_+	PRK00276, infA, translation initiation factor IF-1; Validated	cas6f|185aa|down_0|NZ_CP022279.1_3161612_3162167_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|down_1|NZ_CP022279.1_3162177_3163179_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|308aa|down_2|NZ_CP022279.1_3163189_3164113_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|436aa|down_3|NZ_CP022279.1_3164109_3165417_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	NA|261aa|down_4|NZ_CP022279.1_3167696_3168479_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|341aa|down_5|NZ_CP022279.1_3168475_3169498_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|324aa|down_6|NZ_CP022279.1_3170040_3171012_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	cas1|328aa|down_7|NZ_CP022279.1_3172105_3173089_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|759aa|down_8|NZ_CP022279.1_3173921_3176198_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_9|NZ_CP022279.1_3176228_3176549_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed
GCF_002863845.1_ASM286384v1	NZ_CP022279	Escherichia coli strain STEC299 chromosome, complete genome	5	3173262-3173709	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas1	RT,cas3,csa3,DEDDh,DinG,WYL,cas6f,cas7f,cas5f,cas8f,cas1	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	1	1	3173650-3173681	NZ_CP022280.1_115061-115030	I-F:I-F:I-F	7,7,6	7	TypeI-F	RT,cas3,csa3,DEDDh,DinG,WYL,cas6f,cas7f,cas5f,cas8f,cas1	NA,NA	NA|235aa|up_9|NZ_CP022279.1_3159241_3159946_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_8|NZ_CP022279.1_3160230_3160449_+	PRK00276, infA, translation initiation factor IF-1; Validated	cas6f|185aa|up_7|NZ_CP022279.1_3161612_3162167_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|up_6|NZ_CP022279.1_3162177_3163179_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|308aa|up_5|NZ_CP022279.1_3163189_3164113_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|436aa|up_4|NZ_CP022279.1_3164109_3165417_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	NA|261aa|up_3|NZ_CP022279.1_3167696_3168479_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|341aa|up_2|NZ_CP022279.1_3168475_3169498_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|324aa|up_1|NZ_CP022279.1_3170040_3171012_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	cas1|328aa|up_0|NZ_CP022279.1_3172105_3173089_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|759aa|down_0|NZ_CP022279.1_3173921_3176198_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP022279.1_3176228_3176549_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP022279.1_3176871_3177096_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP022279.1_3177168_3179115_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP022279.1_3179111_3180227_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP022279.1_3180377_3181334_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP022279.1_3181330_3182989_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP022279.1_3183414_3184110_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP022279.1_3184604_3185504_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP022279.1_3185647_3187300_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_002863845.1_ASM286384v1	NZ_CP022279	Escherichia coli strain STEC299 chromosome, complete genome	6	4250097-4250236	6	CRISPRCasFinder	no		RT,cas3,csa3,DEDDh,DinG,WYL,cas6f,cas7f,cas5f,cas8f,cas1	Orphan	TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	44	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,csa3,DEDDh,DinG,WYL,cas6f,cas7f,cas5f,cas8f,cas1	NA,NA	NA|340aa|up_9|NZ_CP022279.1_4238307_4239327_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP022279.1_4239330_4239894_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP022279.1_4240110_4241142_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP022279.1_4241165_4241930_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP022279.1_4241994_4243314_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP022279.1_4243380_4244379_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP022279.1_4244456_4245959_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP022279.1_4246119_4247202_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP022279.1_4247201_4248302_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP022279.1_4248568_4250080_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP022279.1_4250337_4250781_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP022279.1_4250780_4253636_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP022279.1_4253682_4254870_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP022279.1_4255062_4255566_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP022279.1_4255742_4256159_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP022279.1_4256320_4257325_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP022279.1_4257369_4257822_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|407aa|down_7|NZ_CP022279.1_4258499_4259720_+	PRK01388, PRK01388, arginine deiminase; Provisional	NA|311aa|down_8|NZ_CP022279.1_4259730_4260663_+	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|335aa|down_9|NZ_CP022279.1_4260686_4261691_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated
