assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002865825.1_ASM286582v1	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	1	33100-33654	1,1,1,2	PILER-CR,CRISPRCasFinder,CRT,CRISPRCasFinder	no	cas8b1,cas7b,cas5,cas3,DEDDh	cas8b1,cas7b,cas5,cas3,DEDDh,c2c4_V-U1,cas14j	Type I-B	GTCATCCAACAATATAAGATATTTTTAAAT,ATCCAACAATATAAGATATTTTTAAAT,ATNNNANAANATAAGATNTTTTTAAAT,ATCCAACAATATAAGATATTTTTAAAT	30,27,27,27	1	1	33196-33231	NZ_CP013845.1_2737020-2737055	NA:NA:NA:NA	3,5,8,5	8	TypeI-B	csa3,DEDDh,DinG,WYL,cas3,cas8b1,cas7b,cas5,c2c4_V-U1,cas14j	NA|92aa|up_9|NZ_CP013844.1_24753_25029_+,NA|65aa|up_8|NZ_CP013844.1_25212_25407_+,NA|264aa|up_6|NZ_CP013844.1_26663_27455_+,NA|151aa|up_5|NZ_CP013844.1_27658_28111_+,NA|79aa|up_4|NZ_CP013844.1_28293_28530_+,cas8b1|591aa|up_2|NZ_CP013844.1_29480_31253_+,NA|59aa|down_1|NZ_CP013844.1_36705_36882_-,NA|151aa|down_4|NZ_CP013844.1_38132_38585_+,NA|490aa|down_5|NZ_CP013844.1_38714_40184_+,NA|354aa|down_6|NZ_CP013844.1_40167_41229_+,NA|94aa|down_7|NZ_CP013844.1_41616_41898_+	NA|92aa|up_9|NZ_CP013844.1_24753_25029_+	NA	NA|65aa|up_8|NZ_CP013844.1_25212_25407_+	NA	NA|314aa|up_7|NZ_CP013844.1_25549_26491_+	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)	NA|264aa|up_6|NZ_CP013844.1_26663_27455_+	NA	NA|151aa|up_5|NZ_CP013844.1_27658_28111_+	NA	NA|79aa|up_4|NZ_CP013844.1_28293_28530_+	NA	NA|249aa|up_3|NZ_CP013844.1_28720_29467_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b1|591aa|up_2|NZ_CP013844.1_29480_31253_+	NA	cas7b|310aa|up_1|NZ_CP013844.1_31255_32185_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|250aa|up_0|NZ_CP013844.1_32186_32936_+	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas3|822aa|down_0|NZ_CP013844.1_33770_36236_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	NA|59aa|down_1|NZ_CP013844.1_36705_36882_-	NA	NA|196aa|down_2|NZ_CP013844.1_36972_37560_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|167aa|down_3|NZ_CP013844.1_37585_38086_+	pfam13176, TPR_7, Tetratricopeptide repeat	NA|151aa|down_4|NZ_CP013844.1_38132_38585_+	NA	NA|490aa|down_5|NZ_CP013844.1_38714_40184_+	NA	NA|354aa|down_6|NZ_CP013844.1_40167_41229_+	NA	NA|94aa|down_7|NZ_CP013844.1_41616_41898_+	NA	NA|429aa|down_8|NZ_CP013844.1_42042_43329_+	PHA02587, 30, DNA ligase; Provisional	NA|395aa|down_9|NZ_CP013844.1_43708_44893_+	pfam10134, RPA, Replication initiator protein A
GCF_002865825.1_ASM286582v1	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	2	36376-36474	3	CRISPRCasFinder	no	cas8b1,cas7b,cas5,cas3,DEDDh	cas8b1,cas7b,cas5,cas3,DEDDh,c2c4_V-U1,cas14j	Type I-B	ATTATCACATAACATATAATGTTTTTAAATTAT	33	0	0	NA	NA	NA	1	1	TypeI-B	csa3,DEDDh,DinG,WYL,cas3,cas8b1,cas7b,cas5,c2c4_V-U1,cas14j	NA|65aa|up_9|NZ_CP013844.1_25212_25407_+,NA|264aa|up_7|NZ_CP013844.1_26663_27455_+,NA|151aa|up_6|NZ_CP013844.1_27658_28111_+,NA|79aa|up_5|NZ_CP013844.1_28293_28530_+,cas8b1|591aa|up_3|NZ_CP013844.1_29480_31253_+,NA|59aa|down_0|NZ_CP013844.1_36705_36882_-,NA|151aa|down_3|NZ_CP013844.1_38132_38585_+,NA|490aa|down_4|NZ_CP013844.1_38714_40184_+,NA|354aa|down_5|NZ_CP013844.1_40167_41229_+,NA|94aa|down_6|NZ_CP013844.1_41616_41898_+,NA|118aa|down_9|NZ_CP013844.1_45200_45554_+	NA|65aa|up_9|NZ_CP013844.1_25212_25407_+	NA	NA|314aa|up_8|NZ_CP013844.1_25549_26491_+	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)	NA|264aa|up_7|NZ_CP013844.1_26663_27455_+	NA	NA|151aa|up_6|NZ_CP013844.1_27658_28111_+	NA	NA|79aa|up_5|NZ_CP013844.1_28293_28530_+	NA	NA|249aa|up_4|NZ_CP013844.1_28720_29467_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b1|591aa|up_3|NZ_CP013844.1_29480_31253_+	NA	cas7b|310aa|up_2|NZ_CP013844.1_31255_32185_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|250aa|up_1|NZ_CP013844.1_32186_32936_+	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas3|822aa|up_0|NZ_CP013844.1_33770_36236_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	NA|59aa|down_0|NZ_CP013844.1_36705_36882_-	NA	NA|196aa|down_1|NZ_CP013844.1_36972_37560_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|167aa|down_2|NZ_CP013844.1_37585_38086_+	pfam13176, TPR_7, Tetratricopeptide repeat	NA|151aa|down_3|NZ_CP013844.1_38132_38585_+	NA	NA|490aa|down_4|NZ_CP013844.1_38714_40184_+	NA	NA|354aa|down_5|NZ_CP013844.1_40167_41229_+	NA	NA|94aa|down_6|NZ_CP013844.1_41616_41898_+	NA	NA|429aa|down_7|NZ_CP013844.1_42042_43329_+	PHA02587, 30, DNA ligase; Provisional	NA|395aa|down_8|NZ_CP013844.1_43708_44893_+	pfam10134, RPA, Replication initiator protein A	NA|118aa|down_9|NZ_CP013844.1_45200_45554_+	NA
GCF_002865825.1_ASM286582v1	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	3	36572-36737	4	CRISPRCasFinder	no	cas8b1,cas7b,cas5,cas3,DEDDh	cas8b1,cas7b,cas5,cas3,DEDDh,c2c4_V-U1,cas14j	Type I-B	ATTATCACATAACATATAATGTTTTTAAATTAT	33	0	0	NA	NA	NA	2	2	TypeI-B	csa3,DEDDh,DinG,WYL,cas3,cas8b1,cas7b,cas5,c2c4_V-U1,cas14j	NA|65aa|up_9|NZ_CP013844.1_25212_25407_+,NA|264aa|up_7|NZ_CP013844.1_26663_27455_+,NA|151aa|up_6|NZ_CP013844.1_27658_28111_+,NA|79aa|up_5|NZ_CP013844.1_28293_28530_+,cas8b1|591aa|up_3|NZ_CP013844.1_29480_31253_+,NA|151aa|down_2|NZ_CP013844.1_38132_38585_+,NA|490aa|down_3|NZ_CP013844.1_38714_40184_+,NA|354aa|down_4|NZ_CP013844.1_40167_41229_+,NA|94aa|down_5|NZ_CP013844.1_41616_41898_+,NA|118aa|down_8|NZ_CP013844.1_45200_45554_+,NA|48aa|down_9|NZ_CP013844.1_45595_45739_+	NA|65aa|up_9|NZ_CP013844.1_25212_25407_+	NA	NA|314aa|up_8|NZ_CP013844.1_25549_26491_+	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)	NA|264aa|up_7|NZ_CP013844.1_26663_27455_+	NA	NA|151aa|up_6|NZ_CP013844.1_27658_28111_+	NA	NA|79aa|up_5|NZ_CP013844.1_28293_28530_+	NA	NA|249aa|up_4|NZ_CP013844.1_28720_29467_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b1|591aa|up_3|NZ_CP013844.1_29480_31253_+	NA	cas7b|310aa|up_2|NZ_CP013844.1_31255_32185_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|250aa|up_1|NZ_CP013844.1_32186_32936_+	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas3|822aa|up_0|NZ_CP013844.1_33770_36236_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	NA|196aa|down_0|NZ_CP013844.1_36972_37560_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|167aa|down_1|NZ_CP013844.1_37585_38086_+	pfam13176, TPR_7, Tetratricopeptide repeat	NA|151aa|down_2|NZ_CP013844.1_38132_38585_+	NA	NA|490aa|down_3|NZ_CP013844.1_38714_40184_+	NA	NA|354aa|down_4|NZ_CP013844.1_40167_41229_+	NA	NA|94aa|down_5|NZ_CP013844.1_41616_41898_+	NA	NA|429aa|down_6|NZ_CP013844.1_42042_43329_+	PHA02587, 30, DNA ligase; Provisional	NA|395aa|down_7|NZ_CP013844.1_43708_44893_+	pfam10134, RPA, Replication initiator protein A	NA|118aa|down_8|NZ_CP013844.1_45200_45554_+	NA	NA|48aa|down_9|NZ_CP013844.1_45595_45739_+	NA
GCF_002865825.1_ASM286582v1	NZ_CP013845	Clostridium botulinum strain A634 chromosome, complete genome	1	2324566-2324730	1	CRISPRCasFinder	no		csa3,DEDDh,DinG,WYL,cas3	Orphan	GAATTTAAATACATCCTATGTTATTGTTCAAC	32	0	0	NA	NA	III-B	2	2	Orphan	csa3,DEDDh,DinG,WYL,cas3,cas8b1,cas7b,cas5,c2c4_V-U1,cas14j	NA|58aa|up_6|NZ_CP013845.1_2319114_2319288_-,NA|98aa|down_2|NZ_CP013845.1_2328376_2328670_-	NA|146aa|up_9|NZ_CP013845.1_2316695_2317133_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|239aa|up_8|NZ_CP013845.1_2317156_2317873_-	PRK12376, PRK12376, putative translaldolase; Provisional	NA|223aa|up_7|NZ_CP013845.1_2318262_2318931_-	TIGR02794, Protein_TolA, TolA protein	NA|58aa|up_6|NZ_CP013845.1_2319114_2319288_-	NA	NA|88aa|up_5|NZ_CP013845.1_2319527_2319791_+	cd01085, APP, X-Prolyl Aminopeptidase 2	NA|148aa|up_4|NZ_CP013845.1_2319880_2320324_+	pfam16188, Peptidase_M24_C, C-terminal region of peptidase_M24	NA|469aa|up_3|NZ_CP013845.1_2320374_2321781_+	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters	NA|247aa|up_2|NZ_CP013845.1_2321884_2322625_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|297aa|up_1|NZ_CP013845.1_2322631_2323522_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|174aa|up_0|NZ_CP013845.1_2323822_2324344_+	pfam16107, DUF4825, Domain of unknown function (DUF4825)	NA|666aa|down_0|NZ_CP013845.1_2325437_2327435_-	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain	NA|266aa|down_1|NZ_CP013845.1_2327531_2328329_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|98aa|down_2|NZ_CP013845.1_2328376_2328670_-	NA	NA|139aa|down_3|NZ_CP013845.1_2329431_2329848_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|223aa|down_4|NZ_CP013845.1_2330305_2330974_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|307aa|down_5|NZ_CP013845.1_2331348_2332269_-	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|498aa|down_6|NZ_CP013845.1_2332593_2334087_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|189aa|down_7|NZ_CP013845.1_2335063_2335630_-	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB	NA|488aa|down_8|NZ_CP013845.1_2336408_2337872_+	pfam03403, PAF-AH_p_II, Platelet-activating factor acetylhydrolase, isoform II	NA|128aa|down_9|NZ_CP013845.1_2337905_2338289_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators
GCF_002865825.1_ASM286582v1	NZ_CP013845	Clostridium botulinum strain A634 chromosome, complete genome	2	2324982-2325145	2	CRISPRCasFinder	no		csa3,DEDDh,DinG,WYL,cas3	Orphan	GAATTTAAATACATCCTATGTTATTGTTCAAC	32	0	0	NA	NA	III-B	2	2	Orphan	csa3,DEDDh,DinG,WYL,cas3,cas8b1,cas7b,cas5,c2c4_V-U1,cas14j	NA|58aa|up_6|NZ_CP013845.1_2319114_2319288_-,NA|98aa|down_2|NZ_CP013845.1_2328376_2328670_-	NA|146aa|up_9|NZ_CP013845.1_2316695_2317133_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|239aa|up_8|NZ_CP013845.1_2317156_2317873_-	PRK12376, PRK12376, putative translaldolase; Provisional	NA|223aa|up_7|NZ_CP013845.1_2318262_2318931_-	TIGR02794, Protein_TolA, TolA protein	NA|58aa|up_6|NZ_CP013845.1_2319114_2319288_-	NA	NA|88aa|up_5|NZ_CP013845.1_2319527_2319791_+	cd01085, APP, X-Prolyl Aminopeptidase 2	NA|148aa|up_4|NZ_CP013845.1_2319880_2320324_+	pfam16188, Peptidase_M24_C, C-terminal region of peptidase_M24	NA|469aa|up_3|NZ_CP013845.1_2320374_2321781_+	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters	NA|247aa|up_2|NZ_CP013845.1_2321884_2322625_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|297aa|up_1|NZ_CP013845.1_2322631_2323522_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|174aa|up_0|NZ_CP013845.1_2323822_2324344_+	pfam16107, DUF4825, Domain of unknown function (DUF4825)	NA|666aa|down_0|NZ_CP013845.1_2325437_2327435_-	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain	NA|266aa|down_1|NZ_CP013845.1_2327531_2328329_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|98aa|down_2|NZ_CP013845.1_2328376_2328670_-	NA	NA|139aa|down_3|NZ_CP013845.1_2329431_2329848_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|223aa|down_4|NZ_CP013845.1_2330305_2330974_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|307aa|down_5|NZ_CP013845.1_2331348_2332269_-	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|498aa|down_6|NZ_CP013845.1_2332593_2334087_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|189aa|down_7|NZ_CP013845.1_2335063_2335630_-	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB	NA|488aa|down_8|NZ_CP013845.1_2336408_2337872_+	pfam03403, PAF-AH_p_II, Platelet-activating factor acetylhydrolase, isoform II	NA|128aa|down_9|NZ_CP013845.1_2337905_2338289_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators
