assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002870165.1_ASM287016v1	NZ_CP025627	Escherichia coli strain SCEC020007 chromosome, complete genome	1	1087234-1087568	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCGA,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,30,28	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Unclear	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|47aa|up_1|NZ_CP025627.1_1085943_1086084_-,NA	NA|434aa|up_9|NZ_CP025627.1_1076640_1077942_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP025627.1_1077989_1080224_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP025627.1_1080301_1080550_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP025627.1_1080549_1080885_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP025627.1_1080955_1081747_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP025627.1_1081974_1083612_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP025627.1_1083699_1084998_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP025627.1_1085057_1085930_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP025627.1_1085943_1086084_-	NA	NA|224aa|up_0|NZ_CP025627.1_1086222_1086894_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP025627.1_1088205_1089684_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP025627.1_1089710_1090988_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP025627.1_1091306_1092092_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP025627.1_1092161_1093616_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP025627.1_1093637_1095047_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP025627.1_1095024_1095804_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP025627.1_1095800_1096661_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP025627.1_1096808_1097384_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP025627.1_1097400_1097661_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP025627.1_1097651_1098923_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_002870165.1_ASM287016v1	NZ_CP025627	Escherichia coli strain SCEC020007 chromosome, complete genome	2	1113117-1113818	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,11,11	11	TypeI-E	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|571aa|up_9|NZ_CP025627.1_1101480_1103193_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP025627.1_1103267_1104002_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_CP025627.1_1104360_1107027_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|495aa|up_6|NZ_CP025627.1_1107465_1108950_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP025627.1_1108942_1109425_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP025627.1_1109437_1110529_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP025627.1_1110531_1111206_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP025627.1_1111192_1111792_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP025627.1_1111807_1112725_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP025627.1_1112726_1113011_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP025627.1_1113900_1114938_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP025627.1_1115189_1116098_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP025627.1_1116099_1117527_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP025627.1_1117526_1118132_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP025627.1_1118181_1118505_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP025627.1_1118698_1119010_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP025627.1_1119028_1119739_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP025627.1_1119738_1120218_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP025627.1_1120214_1121264_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP025627.1_1121244_1122006_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002870165.1_ASM287016v1	NZ_CP025627	Escherichia coli strain SCEC020007 chromosome, complete genome	3	1610668-1610785	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|62aa|up_9|NZ_CP025627.1_1599953_1600139_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP025627.1_1600151_1601051_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP025627.1_1601243_1602434_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP025627.1_1602430_1603690_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP025627.1_1603679_1605308_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP025627.1_1605580_1606939_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP025627.1_1606943_1608020_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP025627.1_1608482_1609133_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP025627.1_1609186_1609441_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP025627.1_1609440_1610571_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP025627.1_1610804_1613090_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP025627.1_1613785_1617538_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP025627.1_1617665_1618388_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP025627.1_1618534_1621162_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP025627.1_1621310_1622999_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP025627.1_1622995_1623619_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP025627.1_1623762_1628157_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP025627.1_1628157_1629807_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP025627.1_1629811_1630588_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP025627.1_1630661_1631846_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_002870165.1_ASM287016v1	NZ_CP025627	Escherichia coli strain SCEC020007 chromosome, complete genome	4	2279182-2279305	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|30aa|down_7|NZ_CP025627.1_2288201_2288291_+	NA|471aa|up_9|NZ_CP025627.1_2268636_2270049_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP025627.1_2270605_2270815_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP025627.1_2271269_2271896_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP025627.1_2271916_2274019_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP025627.1_2274031_2274670_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP025627.1_2274733_2275402_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP025627.1_2275398_2276184_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP025627.1_2276187_2277000_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP025627.1_2277011_2278616_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP025627.1_2278741_2279047_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP025627.1_2279619_2280876_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP025627.1_2280916_2282290_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP025627.1_2282504_2283146_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP025627.1_2283185_2284334_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP025627.1_2284624_2285836_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP025627.1_2285948_2286881_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP025627.1_2286877_2287903_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP025627.1_2288201_2288291_+	NA	NA|390aa|down_8|NZ_CP025627.1_2288456_2289626_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP025627.1_2289860_2290442_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002870165.1_ASM287016v1	NZ_CP025627	Escherichia coli strain SCEC020007 chromosome, complete genome	5	2948137-2948228	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|70aa|up_8|NZ_CP025627.1_2937213_2937423_-,NA	NA|503aa|up_9|NZ_CP025627.1_2935546_2937055_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|70aa|up_8|NZ_CP025627.1_2937213_2937423_-	NA	NA|213aa|up_7|NZ_CP025627.1_2941479_2942118_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP025627.1_2942405_2943497_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP025627.1_2943496_2944189_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP025627.1_2944200_2944587_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP025627.1_2944594_2945395_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP025627.1_2945404_2945995_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP025627.1_2946005_2946500_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP025627.1_2946520_2947849_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP025627.1_2948651_2949248_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP025627.1_2949268_2949496_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP025627.1_2949533_2950775_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP025627.1_2951067_2952324_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP025627.1_2952584_2953505_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP025627.1_2953504_2953810_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP025627.1_2953961_2954561_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP025627.1_2954557_2957104_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP025627.1_2957103_2958276_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP025627.1_2958405_2959098_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002870165.1_ASM287016v1	NZ_CP025627	Escherichia coli strain SCEC020007 chromosome, complete genome	6	3209633-3209777	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|330aa|up_9|NZ_CP025627.1_3197531_3198521_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP025627.1_3198917_3199826_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP025627.1_3200017_3202039_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP025627.1_3202617_3203295_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP025627.1_3203287_3204043_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP025627.1_3204029_3205184_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP025627.1_3205180_3206221_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP025627.1_3206307_3207597_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP025627.1_3207655_3208132_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP025627.1_3208283_3209567_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP025627.1_3209800_3212062_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP025627.1_3212244_3213678_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP025627.1_3213753_3214806_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP025627.1_3214989_3215943_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP025627.1_3215983_3216979_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP025627.1_3217133_3217952_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP025627.1_3217952_3219011_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP025627.1_3219013_3219703_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP025627.1_3219702_3220476_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP025627.1_3220642_3220792_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_002870165.1_ASM287016v1	NZ_CP025627	Escherichia coli strain SCEC020007 chromosome, complete genome	7	3454111-3454207	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|231aa|up_9|NZ_CP025627.1_3445906_3446599_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP025627.1_3446818_3447361_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP025627.1_3447831_3448698_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP025627.1_3448699_3448912_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP025627.1_3449019_3449541_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP025627.1_3449576_3450962_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP025627.1_3451135_3451630_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP025627.1_3451632_3452355_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP025627.1_3452472_3452982_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP025627.1_3452978_3454046_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP025627.1_3454240_3455134_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP025627.1_3455130_3455946_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP025627.1_3455956_3457216_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP025627.1_3457225_3458893_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP025627.1_3459209_3460259_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP025627.1_3460280_3461516_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP025627.1_3461526_3462312_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|323aa|down_7|NZ_CP025627.1_3462426_3463395_+	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|382aa|down_8|NZ_CP025627.1_3463605_3464751_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_9|NZ_CP025627.1_3464772_3466074_-	PRK11412, PRK11412, uracil/xanthine transporter
GCF_002870165.1_ASM287016v1	NZ_CP025627	Escherichia coli strain SCEC020007 chromosome, complete genome	8	3595315-3595459	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|28aa|down_2|NZ_CP025627.1_3597504_3597588_-	NA|357aa|up_9|NZ_CP025627.1_3580453_3581524_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP025627.1_3581616_3582198_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP025627.1_3582202_3584020_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP025627.1_3584175_3585549_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP025627.1_3585624_3586944_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP025627.1_3587350_3588646_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP025627.1_3588703_3589393_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP025627.1_3589582_3590785_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP025627.1_3590781_3593928_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP025627.1_3594053_3595238_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP025627.1_3595482_3596391_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP025627.1_3596515_3597427_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP025627.1_3597504_3597588_-	NA	NA|95aa|down_3|NZ_CP025627.1_3598073_3598358_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP025627.1_3598429_3599107_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP025627.1_3599364_3599556_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP025627.1_3599605_3600130_-	PRK03731, aroL, shikimate kinase AroL	NA|270aa|down_7|NZ_CP025627.1_3600802_3601612_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_8|NZ_CP025627.1_3601628_3602744_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|107aa|down_9|NZ_CP025627.1_3602845_3603166_-	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF
GCF_002870165.1_ASM287016v1	NZ_CP025627	Escherichia coli strain SCEC020007 chromosome, complete genome	9	4160190-4160339	9	CRISPRCasFinder	no	RT	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|59aa|up_9|NZ_CP025627.1_4149753_4149930_-,NA|62aa|up_8|NZ_CP025627.1_4150117_4150303_+,NA|213aa|up_6|NZ_CP025627.1_4151007_4151646_-,NA	NA|59aa|up_9|NZ_CP025627.1_4149753_4149930_-	NA	NA|62aa|up_8|NZ_CP025627.1_4150117_4150303_+	NA	NA|77aa|up_7|NZ_CP025627.1_4150399_4150630_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|213aa|up_6|NZ_CP025627.1_4151007_4151646_-	NA	NA|421aa|up_5|NZ_CP025627.1_4151675_4152938_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_4|NZ_CP025627.1_4153382_4154402_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP025627.1_4154529_4156032_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP025627.1_4156192_4157275_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP025627.1_4157274_4158375_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP025627.1_4158641_4160153_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP025627.1_4160506_4160950_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP025627.1_4160949_4163805_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP025627.1_4163856_4165044_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP025627.1_4165236_4165740_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP025627.1_4165785_4166202_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP025627.1_4166363_4167368_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP025627.1_4169290_4169743_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_7|NZ_CP025627.1_4169887_4170481_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_8|NZ_CP025627.1_4170551_4171265_+	PRK12742, PRK12742, SDR family oxidoreductase	NA|132aa|down_9|NZ_CP025627.1_4171395_4171791_+	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
