assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002879975.1_ASM287997v1	NZ_CP025747	Escherichia coli strain ML35 chromosome, complete genome	1	977065-977458	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Orphan	cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh	NA|47aa|up_1|NZ_CP025747.1_975774_975915_-,NA	NA|434aa|up_9|NZ_CP025747.1_966471_967773_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP025747.1_967820_970055_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP025747.1_970132_970381_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP025747.1_970380_970716_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP025747.1_970786_971578_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP025747.1_971805_973443_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP025747.1_973530_974829_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP025747.1_974888_975761_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP025747.1_975774_975915_-	NA	NA|224aa|up_0|NZ_CP025747.1_976053_976725_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP025747.1_978097_979576_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP025747.1_979602_980880_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP025747.1_981198_981984_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP025747.1_982053_983508_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP025747.1_983601_984939_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP025747.1_984916_985696_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP025747.1_985692_986553_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP025747.1_986700_987276_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP025747.1_987292_987553_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP025747.1_987543_988815_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_002879975.1_ASM287997v1	NZ_CP025747	Escherichia coli strain ML35 chromosome, complete genome	2	995693-995965	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAA,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,26,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	Orphan	cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh	NA,NA	NA|287aa|up_9|NZ_CP025747.1_985692_986553_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_8|NZ_CP025747.1_986700_987276_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_7|NZ_CP025747.1_987292_987553_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_6|NZ_CP025747.1_987543_988815_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_5|NZ_CP025747.1_988892_989258_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|NZ_CP025747.1_989573_991373_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|NZ_CP025747.1_991372_993085_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|NZ_CP025747.1_993158_993893_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_1|NZ_CP025747.1_994157_994310_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_0|NZ_CP025747.1_994502_995615_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|346aa|down_0|NZ_CP025747.1_996047_997085_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP025747.1_997336_998245_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP025747.1_998246_999674_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP025747.1_999673_1000279_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP025747.1_1000328_1000652_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP025747.1_1000845_1001157_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP025747.1_1001175_1001886_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP025747.1_1001885_1002365_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP025747.1_1002361_1003411_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP025747.1_1003391_1004153_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002879975.1_ASM287997v1	NZ_CP025747	Escherichia coli strain ML35 chromosome, complete genome	3	1111783-1111927	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh	NA|28aa|up_2|NZ_CP025747.1_1109653_1109737_+,NA	NA|372aa|up_9|NZ_CP025747.1_1104409_1105525_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NZ_CP025747.1_1105541_1106351_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|153aa|up_7|NZ_CP025747.1_1106470_1106929_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_CP025747.1_1107111_1107636_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_CP025747.1_1107685_1107877_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_CP025747.1_1108134_1108812_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_CP025747.1_1108883_1109168_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_CP025747.1_1109653_1109737_+	NA	NA|304aa|up_1|NZ_CP025747.1_1109814_1110726_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NZ_CP025747.1_1110850_1111759_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_CP025747.1_1112003_1113188_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|NZ_CP025747.1_1113313_1116460_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NZ_CP025747.1_1116456_1117659_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NZ_CP025747.1_1117848_1118538_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NZ_CP025747.1_1118595_1119891_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NZ_CP025747.1_1120297_1121617_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NZ_CP025747.1_1121692_1123066_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|down_7|NZ_CP025747.1_1123221_1125039_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NZ_CP025747.1_1125043_1125625_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NZ_CP025747.1_1125717_1126788_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_002879975.1_ASM287997v1	NZ_CP025747	Escherichia coli strain ML35 chromosome, complete genome	4	1253272-1253368	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh	NA,NA	NA|454aa|up_9|NZ_CP025747.1_1241052_1242414_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP025747.1_1242470_1243772_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP025747.1_1243793_1244939_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP025747.1_1245166_1245952_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP025747.1_1245962_1247198_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP025747.1_1247219_1248269_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP025747.1_1248585_1250253_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP025747.1_1250262_1251522_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP025747.1_1251532_1252348_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP025747.1_1252344_1253238_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP025747.1_1253432_1254500_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP025747.1_1254496_1255006_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP025747.1_1255123_1255846_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP025747.1_1255848_1256343_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP025747.1_1256516_1257902_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP025747.1_1257937_1258459_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP025747.1_1258566_1258779_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP025747.1_1258780_1259647_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP025747.1_1260126_1260669_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP025747.1_1260888_1261581_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_002879975.1_ASM287997v1	NZ_CP025747	Escherichia coli strain ML35 chromosome, complete genome	5	3308601-3308727	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh	NA,NA	NA|395aa|up_9|NZ_CP025747.1_3287508_3288693_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP025747.1_3288766_3289543_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP025747.1_3289547_3291197_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP025747.1_3291197_3295592_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP025747.1_3295735_3296359_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP025747.1_3296355_3298044_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP025747.1_3298192_3300820_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP025747.1_3300966_3301689_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP025747.1_3301816_3305569_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP025747.1_3306264_3308550_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP025747.1_3308783_3309914_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP025747.1_3309913_3310168_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP025747.1_3310221_3310872_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP025747.1_3311334_3312411_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP025747.1_3312415_3313774_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP025747.1_3314046_3315675_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP025747.1_3315664_3316924_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP025747.1_3316920_3318111_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_8|NZ_CP025747.1_3318303_3319203_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NZ_CP025747.1_3319215_3319401_+	PRK09956, PRK09956, ISNCY family transposase
GCF_002879975.1_ASM287997v1	NZ_CP025747	Escherichia coli strain ML35 chromosome, complete genome	6	4094238-4094379	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,DinG,c2c9_V-U4,DEDDh	NA,NA	NA|96aa|up_9|NZ_CP025747.1_4083229_4083517_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_CP025747.1_4083513_4084800_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_CP025747.1_4084850_4085792_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_CP025747.1_4085806_4086577_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_CP025747.1_4087049_4088564_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_CP025747.1_4088594_4089737_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP025747.1_4089865_4091083_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP025747.1_4091156_4092710_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP025747.1_4092818_4093604_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP025747.1_4093609_4094200_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP025747.1_4094408_4094804_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP025747.1_4095065_4098287_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP025747.1_4098304_4099453_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP025747.1_4099908_4100730_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP025747.1_4100896_4101811_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP025747.1_4101876_4102827_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP025747.1_4102828_4103278_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP025747.1_4103402_4103897_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP025747.1_4103896_4106713_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP025747.1_4106755_4107697_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
