The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	143551	250522	2817746	integrase,protease,tail,holin,transposase,terminase,capsid,head,portal	Enterococcus_phage(19.61%)	117	148496:148510	251301:251315
WP_002287598.1|143551_145786_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	39.1	5.1e-127
WP_002290825.1|145932_146253_+	DUF1827 family protein	NA	NA	NA	NA	NA
WP_000122610.1|146420_147713_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.9	3.2e-57
WP_002295394.1|147930_149511_-	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	28.4	5.1e-33
148496:148510	attL	TTATTTGTACGTTCC	NA	NA	NA	NA
WP_002295395.1|149911_151288_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
148496:148510	attL	TTATTTGTACGTTCC	NA	NA	NA	NA
WP_002290821.1|151415_152534_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_002290819.1|152675_153110_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002290817.1|153187_153721_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_002296955.1|153814_154993_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_002295398.1|154985_155783_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_002295399.1|155889_157272_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	37.4	3.5e-86
WP_002292856.1|157445_158024_-	chitin-binding protein	NA	A0A0K1Y848	Apis_mellifera_filamentous_virus	34.4	9.7e-14
WP_002292857.1|158344_158815_+	tryptophan-rich sensory protein	NA	NA	NA	NA	NA
WP_002295400.1|158922_160149_-	LytR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002292860.1|160902_161103_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	67.7	7.6e-19
WP_002298541.1|161236_161845_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	60.6	2.6e-70
WP_002292862.1|161929_162400_-	GtrA family protein	NA	NA	NA	NA	NA
WP_002318002.1|162447_163362_-	cation transporter	NA	A0A1V0SED0	Indivirus	30.8	7.9e-10
WP_002348731.1|163507_164311_+	DUF1189 domain-containing protein	NA	NA	NA	NA	NA
WP_002289148.1|164488_165436_+	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_002326809.1|165620_166916_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	5.0e-10
WP_002318627.1|167025_167319_-	iron-sulfur cluster biosynthesis protein	NA	NA	NA	NA	NA
WP_002289151.1|167346_168012_-	TrkA family potassium uptake protein	NA	NA	NA	NA	NA
WP_002348688.1|168151_168784_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002348689.1|168790_169858_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_002295408.1|169854_170586_-	cell wall-active antibiotics response protein	NA	NA	NA	NA	NA
WP_002295409.1|170753_171233_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_002348690.1|171368_172544_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_002297066.1|172708_173869_+	serine hydrolase	NA	A0A2R4AS58	Mycobacterium_phage	25.2	3.2e-08
WP_002298534.1|173908_174856_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SKV4	Klosneuvirus	38.1	6.6e-52
WP_002298532.1|174988_176380_-	polymerase	NA	NA	NA	NA	NA
WP_002298530.1|176505_176916_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	2.4e-19
WP_002297946.1|178451_179879_-	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_002297948.1|181020_182016_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_002297949.1|182129_183119_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	33.6	7.7e-11
WP_002348694.1|183090_183900_-	glycosyltransferase	NA	F2Y1U7	Organic_Lake_phycodnavirus	31.9	3.6e-14
WP_010782577.1|183958_185350_-	sugar transferase	NA	NA	NA	NA	NA
WP_002348696.1|185637_187776_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_002348697.1|187814_189401_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_002297957.1|189390_190611_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.9	1.1e-11
WP_002289081.1|190622_191429_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010782578.1|191736_193011_+|transposase	ISL3-like element IS1476 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.1	8.6e-55
WP_002297185.1|193275_194571_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002348825.1|194667_195948_-	EpaQ family protein	NA	NA	NA	NA	NA
WP_002348826.1|195991_198025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286428.1|198058_198910_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	39.0	1.7e-38
WP_002294532.1|199007_200036_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	42.9	6.4e-69
WP_002286442.1|200057_200630_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	49.2	8.3e-42
WP_002286449.1|200643_201510_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	62.5	3.7e-102
WP_002321540.1|201609_202344_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_002286453.1|202321_203149_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_002286455.1|203148_203949_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_002286457.1|203941_205081_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_002286461.1|205156_206080_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_002294533.1|206111_206876_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_002297963.1|207033_207474_+	flavodoxin	NA	NA	NA	NA	NA
WP_002286467.1|207651_208221_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002348827.1|208477_209710_+	aminopeptidase	NA	NA	NA	NA	NA
WP_076005172.1|210014_210215_+|integrase	tyrosine-type recombinase/integrase	integrase	Q9AZR0	Lactococcus_phage	75.7	4.6e-08
WP_002286680.1|210463_210766_+	hypothetical protein	NA	NA	NA	NA	NA
210243:210257	attR	TTATTTGTACGTTCC	NA	NA	NA	NA
WP_002286473.1|210801_211173_-	hypothetical protein	NA	NA	NA	NA	NA
210243:210257	attR	TTATTTGTACGTTCC	NA	NA	NA	NA
WP_002296902.1|211174_211576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286474.1|211589_211997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087046766.1|212919_214082_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.2	4.1e-80
WP_002349643.1|215021_216047_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A139ZVY1	Enterococcus_phage	61.3	2.8e-64
WP_002286683.1|216043_216268_-|holin	holin	holin	NA	NA	NA	NA
WP_002286686.1|216264_216558_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296594.1|216595_216733_-	XkdX family protein	NA	NA	NA	NA	NA
WP_002286491.1|216734_217181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286495.1|217343_219470_-	hypothetical protein	NA	A0A060AI60	Enterococcus_phage	40.1	1.4e-62
WP_002286497.1|219493_221785_-	hypothetical protein	NA	A0A1D3SNL1	Enterococcus_phage	30.0	9.6e-89
WP_002286500.1|221794_222532_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_002348716.1|222582_226014_-|tail	phage tail tape measure protein	tail	A0A1D3SNL5	Enterococcus_phage	44.4	3.1e-67
WP_002305377.1|226030_226213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286510.1|226215_226578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286512.1|226597_227206_-	hypothetical protein	NA	Q8W5Z9	Listeria_phage	41.1	3.0e-34
WP_002286516.1|227217_227622_-	hypothetical protein	NA	R4IBU7	Listeria_phage	29.5	6.1e-07
WP_002296598.1|227614_228016_-	hypothetical protein	NA	A0A1B1P759	Bacillus_phage	33.3	1.1e-13
WP_002286522.1|228005_228359_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_002286523.1|228348_228660_-	hypothetical protein	NA	A0A1B1P751	Bacillus_phage	42.1	6.3e-12
WP_002286524.1|228656_229532_-	hypothetical protein	NA	D2IYX3	Enterococcus_phage	74.2	5.6e-130
WP_002286525.1|229541_230702_-|capsid	phage major capsid protein	capsid	A0A1B1P752	Bacillus_phage	50.1	1.8e-99
WP_002286527.1|230701_231388_-|protease	Clp protease ClpP	protease	A0A2I6PDD0	Staphylococcus_phage	39.7	1.0e-30
WP_002286530.1|231350_232529_-|portal	phage portal protein	portal	A0A1B1P754	Bacillus_phage	40.4	5.4e-80
WP_002286533.1|232548_234243_-|terminase	terminase large subunit	terminase	A0A1B1P766	Bacillus_phage	49.6	3.0e-148
WP_002286538.1|234220_234535_-|terminase	terminase	terminase	A0A1S7FYW6	Listeria_phage	37.9	3.3e-08
WP_002296599.1|234637_234919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286540.1|234923_235268_-	HNH endonuclease	NA	A0A1B1P757	Bacillus_phage	57.1	3.8e-26
WP_002296600.1|235293_235461_-	thymidylate synthase	NA	NA	NA	NA	NA
WP_002311723.1|235656_235863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002300143.1|236316_236592_+	hypothetical protein	NA	A0A2H4JEH2	uncultured_Caudovirales_phage	45.7	9.9e-17
WP_002286542.1|237049_237463_-	autolysin	NA	C9E2P5	Enterococcus_phage	81.0	1.5e-56
WP_002286693.1|237539_237836_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286545.1|237832_238390_-	DUF1642 domain-containing protein	NA	A0A0C5KKV2	Enterococcus_phage	36.2	2.8e-10
WP_002286547.1|238386_238806_-	hypothetical protein	NA	D2IZL0	Enterococcus_phage	54.3	4.1e-30
WP_002296604.1|238802_239048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286550.1|239007_239364_-	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	37.4	3.1e-10
WP_002286694.1|239363_239669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296606.1|239665_239827_-	antitoxin	NA	NA	NA	NA	NA
WP_002286695.1|239823_240126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286696.1|240287_240557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286552.1|240568_241318_-	helix-turn-helix domain-containing protein	NA	A0A1L2BY83	Clostridium_phage	54.0	1.7e-31
WP_002286553.1|241320_242007_-	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.1	3.2e-88
WP_002286557.1|242012_242684_-	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.4	4.2e-29
WP_002286559.1|242676_243018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286562.1|243195_243894_-	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	34.6	1.7e-25
WP_002286568.1|243980_244451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296610.1|244493_244673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286573.1|244659_244998_-	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_002296611.1|245013_245217_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002290310.1|245231_246008_-	phage antirepressor protein	NA	A0A1Q1PVU2	Staphylococcus_phage	53.8	1.1e-73
WP_002296612.1|246306_246627_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SDR1	Streptococcus_phage	40.2	2.0e-13
WP_002348715.1|246644_247076_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002303013.1|247205_247667_+	DUF4429 domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	34.8	4.5e-06
WP_002296616.1|247700_248336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296617.1|248448_249084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286587.1|249382_250522_+|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	47.1	2.6e-95
251301:251315	attR	AATGATCTTCTTCTA	NA	NA	NA	NA
>prophage 2
NZ_CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	321677	330148	2817746		Streptococcus_phage(66.67%)	8	NA	NA
WP_002288083.1|321677_323867_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.6	1.8e-286
WP_002288081.1|324181_324784_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.6	1.7e-53
WP_002294035.1|324837_325959_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002288078.1|326067_326940_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.4	3.1e-88
WP_002288076.1|327008_327356_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
WP_002288071.1|328207_329146_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	34.4	3.3e-35
WP_002292340.1|329159_329489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002294039.1|329503_330148_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
>prophage 3
NZ_CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	766153	810019	2817746	transposase,tRNA	Streptococcus_phage(50.0%)	42	NA	NA
WP_000997695.1|766153_767332_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002321965.1|767370_767892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296909.1|767857_769495_+	membrane protein	NA	NA	NA	NA	NA
WP_002294728.1|769639_770380_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_002294730.1|770570_771206_-	DUF998 domain-containing protein	NA	NA	NA	NA	NA
WP_002294732.1|771352_772594_-	serine/threonine transporter SstT	NA	NA	NA	NA	NA
WP_025478783.1|773803_775852_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_002296623.1|775898_777194_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.5	3.9e-55
WP_002294735.1|777392_778109_-	DUF4767 domain-containing protein	NA	NA	NA	NA	NA
WP_000222572.1|778207_779161_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002296256.1|779252_780251_-	DUF4767 domain-containing protein	NA	NA	NA	NA	NA
WP_002304106.1|780325_780622_-	peptidase	NA	NA	NA	NA	NA
WP_002296258.1|780614_780908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296259.1|781053_781605_-	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
WP_002296261.1|781778_782078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296262.1|782104_782371_-	DUF960 domain-containing protein	NA	NA	NA	NA	NA
WP_002340421.1|782717_783401_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002295755.1|783437_783935_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002326839.1|783990_784899_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002296391.1|785378_786170_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_002296392.1|786360_786996_-	DUF998 domain-containing protein	NA	NA	NA	NA	NA
WP_002291912.1|787261_788314_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002291914.1|788326_789265_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_002296570.1|789715_790366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301781.1|790465_790975_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	34.8	2.8e-17
WP_002348774.1|791220_792540_-|transposase	IS1380-like element IS1678 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	82.7	6.3e-210
WP_002331215.1|793021_793405_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002336652.1|793645_794260_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002336651.1|795075_796050_-	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_002336650.1|796068_796524_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_002336649.1|796551_797997_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002331209.1|797993_798929_-	1-phosphofructokinase	NA	NA	NA	NA	NA
WP_002331208.1|799096_799855_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002345001.1|800349_801549_-	MFS transporter	NA	NA	NA	NA	NA
WP_002331206.1|801991_802483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002331205.1|802509_803655_-	galactonate dehydratase	NA	Q6A202	Oenococcus_phage	33.4	1.2e-52
WP_002336647.1|803669_805037_-	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_002331203.1|805061_805340_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002336646.1|805358_805817_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_002336645.1|805828_806449_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_002336644.1|806459_808502_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010782519.1|808879_810019_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	830246	837983	2817746		Streptococcus_phage(66.67%)	6	NA	NA
WP_002345009.1|830246_830639_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	99.2	4.6e-68
WP_002345010.1|830725_831223_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	97.6	1.3e-88
WP_032509114.1|831339_831564_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	97.1	8.5e-27
WP_002286940.1|831667_833578_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	7.1e-37
WP_000398284.1|834361_835567_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_002297361.1|836123_837983_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	26.0	2.8e-30
>prophage 5
NZ_CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	869327	1017935	2817746	transposase,tRNA,holin	Streptococcus_phage(13.16%)	125	NA	NA
WP_086953915.1|869327_870667_-|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
WP_002300788.1|871292_871772_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010782513.1|874049_875660_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	48.0	8.4e-124
WP_010782512.1|875567_878165_-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_002300794.1|878469_878850_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_002294183.1|878946_880092_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	40.9	2.5e-82
WP_002341590.1|880320_881274_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002294185.1|881376_882075_+	DUF975 family protein	NA	NA	NA	NA	NA
WP_002289743.1|882242_884882_-	cation-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	31.2	1.6e-84
WP_002326809.1|885591_886887_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	5.0e-10
WP_002319878.1|887048_888344_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.2	1.5e-54
WP_002341590.1|888434_889388_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002350806.1|891064_892096_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002348889.1|892288_893464_+|holin	betaine/proline/choline family ABC transporter ATP-binding protein	holin	Q6GZ03	Mycoplasma_phage	32.9	1.0e-17
WP_002293405.1|893467_894109_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002301114.1|894105_895023_+	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002301116.1|895019_895691_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002301121.1|896921_897188_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_002294199.1|897187_897451_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_002348885.1|897925_898111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294202.1|898252_900076_-	APC family permease	NA	NA	NA	NA	NA
WP_002294203.1|900672_903378_-	YhgE/Pip domain-containing protein	NA	NA	NA	NA	NA
WP_002301399.1|903603_904563_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_016171130.1|904829_906125_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.2	1.1e-09
WP_002294206.1|906270_907218_-	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002293413.1|907407_907677_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_002289874.1|907852_908215_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A291I9M9	Lactobacillus_phage	37.8	7.6e-09
WP_002294207.1|908225_909347_-	alanine racemase	NA	NA	NA	NA	NA
WP_002294209.1|909362_909713_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_086272912.1|909842_911360_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.2	1.3e-62
WP_002317074.1|911675_913028_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA	NA
WP_102642282.1|913180_914257_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_002329999.1|914452_916198_+	AarF/ABC1/UbiB kinase family protein	NA	M4R0M8	Ostreococcus_lucimarinus_virus	28.1	1.3e-40
WP_002294214.1|916446_916914_-	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_002294217.1|916897_918271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296548.1|918591_919080_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002294220.1|919101_919704_-	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	30.6	3.6e-19
WP_086953915.1|919772_921112_-|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
WP_002289751.1|921626_922256_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	40.2	3.1e-34
WP_002289749.1|922339_923035_-	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA	NA
WP_002348768.1|923047_923764_-	pseudouridine synthase	NA	NA	NA	NA	NA
WP_002299254.1|924093_924702_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_002289744.1|925026_925350_+	DUF960 domain-containing protein	NA	NA	NA	NA	NA
WP_002289277.1|925531_926902_+	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_010782510.1|927248_928427_+|transposase	IS110 family transposase	transposase	A0A1X9I5Z0	Streptococcus_phage	39.9	3.8e-65
WP_002326809.1|928494_929790_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	5.0e-10
WP_002294228.1|930165_931467_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_002289279.1|931820_933812_-	potassium transporter Kup	NA	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	33.9	8.4e-65
WP_002289280.1|933955_934222_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_002297086.1|934731_936858_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_002289282.1|937045_937315_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_002289284.1|937565_938129_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	37.1	2.3e-12
WP_002294232.1|938381_938903_-	transcription repressor NadR	NA	NA	NA	NA	NA
WP_002301156.1|938905_939748_-	chorismate mutase	NA	NA	NA	NA	NA
WP_002294236.1|939740_940466_-	NAD-dependent protein deacylase	NA	NA	NA	NA	NA
WP_002293448.1|940641_940938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297081.1|941505_943098_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002294240.1|943110_943851_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	5.5e-30
WP_002294242.1|944018_945368_+	amino acid permease	NA	NA	NA	NA	NA
WP_002297079.1|945495_946086_-	DUF1211 domain-containing protein	NA	NA	NA	NA	NA
WP_002294246.1|946232_947585_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_002289815.1|948384_948759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002294249.1|948875_949358_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_002341570.1|949409_949988_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002289812.1|950016_951018_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.8	2.3e-07
WP_002290528.1|951030_951633_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_002294252.1|951802_952249_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_002294254.1|952325_953039_-	trehalose operon repressor	NA	A0A291LID1	Streptomyces_phage	39.7	1.2e-05
WP_002348864.1|953261_955250_+	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA	NA
WP_002296127.1|955329_956877_-|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
WP_002287659.1|956978_957332_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_002285758.1|957321_957516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297218.1|957775_959071_+|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002348596.1|959209_959770_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_002301736.1|959791_961900_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	41.1	1.8e-57
WP_002294258.1|961917_964563_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	26.1	3.6e-39
WP_002297923.1|964546_964960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002348595.1|964937_965735_-	TIGR00282 family metallophosphoesterase	NA	NA	NA	NA	NA
WP_002294261.1|966142_966916_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002294262.1|966935_967571_-	DNA alkylation repair protein	NA	NA	NA	NA	NA
WP_002324284.1|967598_968396_-	formate/nitrite transporter	NA	NA	NA	NA	NA
WP_002294265.1|968711_969323_+	30S ribosomal protein S4	NA	NA	NA	NA	NA
WP_002294267.1|969462_970002_+	biotin transporter BioY	NA	NA	NA	NA	NA
WP_002294268.1|970071_970581_-	QueT transporter family protein	NA	E7DN70	Pneumococcus_phage	31.8	7.5e-10
WP_002297929.1|970961_971723_-	3-oxoacyl-ACP reductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	31.7	1.2e-16
WP_002290506.1|971719_971941_-	DUF2829 domain-containing protein	NA	A0A0S2MV93	Bacillus_phage	33.3	1.1e-05
WP_002348592.1|971930_973544_-	M protein trans-acting positive regulator	NA	NA	NA	NA	NA
WP_002294273.1|973543_974245_-	LrgB family protein	NA	NA	NA	NA	NA
WP_002301190.1|974237_974648_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_002348590.1|974973_975708_+	aquaporin family protein	NA	NA	NA	NA	NA
WP_010782508.1|975753_977199_-|transposase	IS1182-like element ISEfa7 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.8	2.2e-123
WP_010782507.1|977456_978416_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_002348747.1|978648_979548_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_002287910.1|979557_979914_-	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_002287909.1|980269_980566_+|tRNA	phenylalanyl-tRNA synthetase subunit alpha	tRNA	NA	NA	NA	NA
WP_002301160.1|981209_982163_-	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002301162.1|982185_982941_-	ATP-binding cassette domain-containing protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.1	2.2e-13
WP_002301163.1|982937_983897_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_002294286.1|983889_984840_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.5	1.6e-66
WP_002294287.1|984989_985442_+	YueI family protein	NA	NA	NA	NA	NA
WP_002326066.1|985459_986413_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002294288.1|986596_988864_-	bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	NA	NA	NA	NA	NA
WP_002301165.1|989050_990049_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_002348798.1|990060_990870_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002301166.1|990878_994460_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
WP_002287896.1|994479_995166_-	ribonuclease III	NA	K7YH73	Megavirus	32.3	9.1e-27
WP_002287894.1|995513_997295_-	oligopeptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002287893.1|997320_998235_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002287892.1|998261_999224_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002287891.1|999223_1000168_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.1	3.9e-20
WP_002287889.1|1000168_1001173_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	5.1e-18
WP_002294295.1|1001440_1001683_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_002289721.1|1001804_1002806_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_002301167.1|1002854_1004891_-	ATP-dependent DNA helicase RecG	NA	A0A2H4JBQ0	uncultured_Caudovirales_phage	22.9	5.3e-06
WP_002301169.1|1005007_1006690_-	DAK2 domain-containing protein	NA	NA	NA	NA	NA
WP_002294298.1|1006741_1007104_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002290463.1|1007373_1007562_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_002294300.1|1007799_1010469_+	YfhO family protein	NA	NA	NA	NA	NA
WP_002317547.1|1010559_1011180_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_002348801.1|1011291_1011693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002317041.1|1011827_1012166_+	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA	NA
WP_002326711.1|1012510_1013689_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002301399.1|1014063_1015023_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_002298563.1|1015695_1016442_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_002297218.1|1016639_1017935_+|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
>prophage 6
NZ_CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	1173834	1212611	2817746	transposase,integrase	Streptococcus_phage(22.22%)	41	1202240:1202255	1214376:1214391
WP_002318021.1|1173834_1175001_-|integrase	site-specific integrase	integrase	A0A172LN96	Lactococcus_phage	34.0	3.3e-45
WP_002322813.1|1175055_1175706_-	helix-turn-helix transcriptional regulator	NA	Q20DG0	Lactobacillus_phage	33.3	3.2e-05
WP_002348874.1|1175780_1175984_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002321715.1|1175991_1176318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002348875.1|1176472_1177516_+	replication initiator protein A	NA	NA	NA	NA	NA
WP_002348876.1|1177517_1177736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016252733.1|1177722_1180368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002322855.1|1180381_1180570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002348879.1|1180581_1181193_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
WP_002348880.1|1181177_1182569_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA	NA
WP_002322858.1|1182784_1183087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002348881.1|1183079_1183427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010782540.1|1183486_1184761_-|transposase	ISL3-like element IS1476 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.1	6.6e-55
WP_002322860.1|1185217_1185532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002322861.1|1185630_1185879_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_002322862.1|1186107_1186881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002348835.1|1186985_1187231_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002348834.1|1187606_1188086_+	DUF3841 domain-containing protein	NA	NA	NA	NA	NA
WP_002350767.1|1188263_1189760_+	RNA-directed DNA polymerase	NA	Q2P9X6	Enterobacteria_phage	34.3	8.5e-70
WP_002322866.1|1189905_1190220_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_002322867.1|1190335_1191595_+	M20 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_002322868.1|1191606_1192065_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002348831.1|1192139_1192919_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002322870.1|1193167_1194715_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002322871.1|1194735_1196115_+	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_076005180.1|1196155_1197619_-|transposase	IS1182-like element ISEfa7 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.8	2.2e-123
WP_002298774.1|1197825_1198800_+	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002312606.1|1198781_1199243_+	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002298777.1|1199292_1199757_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002298779.1|1199770_1200520_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002298780.1|1200519_1201350_+	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_002322873.1|1201349_1201997_+	HAD family phosphatase	NA	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	27.4	4.5e-12
WP_002298782.1|1202094_1202871_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
1202240:1202255	attL	ACCTTTTCTAAAATAA	NA	NA	NA	NA
WP_002364278.1|1204420_1204831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002348684.1|1204911_1205532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297291.1|1205861_1207088_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_002320809.1|1207159_1207318_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002297292.1|1208005_1208746_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	33.2	5.7e-19
WP_002297293.1|1208837_1210025_-|transposase	IS110 family transposase	transposase	A0A0U3ULR1	Bacillus_phage	28.7	4.6e-26
WP_002297294.1|1210346_1211189_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_002323589.1|1211462_1212611_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.7	9.0e-205
1214376:1214391	attR	TTATTTTAGAAAAGGT	NA	NA	NA	NA
>prophage 7
NZ_CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	1262580	1271612	2817746		Streptococcus_phage(83.33%)	9	NA	NA
WP_002297353.1|1262580_1263765_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	61.6	2.9e-142
WP_002297354.1|1264023_1264314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297358.1|1265678_1266353_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_002297360.1|1266430_1266670_-	hypothetical protein	NA	A0A1S5SFB5	Streptococcus_phage	80.3	2.1e-23
WP_002297361.1|1266763_1268623_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	26.0	2.8e-30
WP_002343904.1|1269337_1270483_-	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	62.8	6.0e-132
WP_002311649.1|1270565_1270910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297365.1|1270910_1271285_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	2.4e-34
WP_002297366.1|1271297_1271612_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	53.4	1.0e-25
>prophage 8
NZ_CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	1354142	1477351	2817746	transposase,protease,tRNA,holin	Bacillus_phage(21.43%)	90	NA	NA
WP_002287372.1|1354142_1355081_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	29.7	5.2e-09
WP_002287374.1|1355080_1356439_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
WP_002287376.1|1356451_1357192_+	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA	NA
WP_002287377.1|1357188_1359258_+	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	A0A1V0SDC3	Indivirus	30.3	3.5e-21
WP_002287379.1|1359422_1360322_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_002287380.1|1360334_1360985_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_002287382.1|1360985_1361624_+	thiamine diphosphokinase	NA	NA	NA	NA	NA
WP_002296044.1|1361778_1362633_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_002287385.1|1362636_1363146_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_002322795.1|1363400_1364939_+	hypothetical protein	NA	B5LJD6	Mycobacterium_phage	50.5	2.3e-17
WP_002297218.1|1365071_1366367_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002322796.1|1366528_1368328_-	M3 family oligoendopeptidase	NA	NA	NA	NA	NA
WP_002287389.1|1368450_1368957_+	membrane protein	NA	NA	NA	NA	NA
WP_002287391.1|1369035_1369758_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_002287397.1|1369835_1371236_-	L,D-transpeptidase family protein	NA	NA	NA	NA	NA
WP_002287399.1|1371405_1372380_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_002287401.1|1372732_1373293_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_002287403.1|1373309_1376831_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_002287405.1|1376845_1378441_+	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_002287407.1|1378451_1378721_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
WP_002287409.1|1378787_1379213_+	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_002287412.1|1379258_1379729_+	RNA-binding protein S1	NA	NA	NA	NA	NA
WP_002287414.1|1379848_1381294_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	E3T4I1	Cafeteria_roenbergensis_virus	24.5	6.8e-08
WP_002287415.1|1381293_1381839_+	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	25.3	4.1e-06
WP_002287418.1|1381928_1384040_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	C7U047	Ostreococcus_tauri_virus	50.3	9.1e-110
WP_002296053.1|1384256_1385144_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_002290055.1|1385144_1386149_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_002296055.1|1386259_1387756_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	40.9	8.7e-91
WP_002297218.1|1395941_1397237_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002289731.1|1397591_1398785_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	72.0	1.3e-150
WP_002295566.1|1398914_1400387_+	MFS transporter	NA	NA	NA	NA	NA
WP_002295567.1|1400469_1401258_+	esterase family protein	NA	NA	NA	NA	NA
WP_002285876.1|1401324_1401993_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002285883.1|1402107_1403820_+	ABC transporter ATP-binding protein	NA	F2Y302	Organic_Lake_phycodnavirus	25.4	1.2e-14
WP_002301355.1|1403822_1405595_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.4	1.2e-54
WP_086953915.1|1405720_1407059_+|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
WP_000997695.1|1407930_1409109_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002341521.1|1409206_1409563_-	hypothetical protein	NA	U4KJ82	Streptococcus_phage	42.2	9.2e-15
WP_002304713.1|1409634_1410567_-	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	53.8	1.8e-57
WP_002301399.1|1410769_1411729_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_002301818.1|1411861_1412068_+|holin	holin	holin	NA	NA	NA	NA
WP_002303477.1|1412078_1413098_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	2.4e-60
WP_025479400.1|1413872_1414175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296840.1|1414271_1415459_+|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
WP_076005178.1|1415651_1415843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000997695.1|1415866_1417045_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002285906.1|1417663_1418230_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	42.8	2.2e-34
WP_002285909.1|1418229_1419186_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	57.4	3.3e-43
WP_002285911.1|1419185_1419842_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_002301403.1|1420211_1422230_+	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXE4	Bacillus_phage	39.6	5.8e-13
WP_002285916.1|1422656_1425071_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	72.8	0.0e+00
WP_002285917.1|1425418_1426972_+	glycosyl hydrolase	NA	NA	NA	NA	NA
WP_002285918.1|1427352_1429137_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.2	2.7e-46
WP_002285920.1|1429151_1430873_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.0	1.7e-37
WP_002303189.1|1430972_1431734_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002348774.1|1432443_1433763_-|transposase	IS1380-like element IS1678 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	82.7	6.3e-210
WP_002285924.1|1435324_1438396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002285926.1|1438533_1439562_+	collagen binding domain-containing protein	NA	NA	NA	NA	NA
WP_104674935.1|1439985_1440156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002285932.1|1440349_1440529_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_002297280.1|1440538_1440763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002321621.1|1440915_1442028_+	FUSC family protein	NA	NA	NA	NA	NA
WP_002285944.1|1442105_1442399_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_002285948.1|1442566_1442881_+	PTS cellobiose transporter subunit IIB	NA	NA	NA	NA	NA
WP_002285949.1|1442901_1444881_+	BglG family transcription antiterminator	NA	NA	NA	NA	NA
WP_002285954.1|1444893_1445220_+	PTS cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002285960.1|1445235_1445754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002285961.1|1445753_1447106_+	PTS cellobiose transporter subunit IIC	NA	NA	NA	NA	NA
WP_002285962.1|1447189_1448695_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_002285964.1|1448786_1449377_-	transporter	NA	NA	NA	NA	NA
WP_002304848.1|1449555_1451202_+	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_002285969.1|1451250_1451970_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_002285971.1|1452448_1453396_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002285972.1|1453407_1454328_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002285974.1|1454368_1455826_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010782528.1|1456170_1456785_+	DUF624 domain-containing protein	NA	NA	NA	NA	NA
WP_002285976.1|1456777_1458502_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_002304851.1|1458498_1459950_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002285980.1|1460422_1462576_-	alpha-1,2-mannosidase	NA	NA	NA	NA	NA
WP_002302559.1|1462577_1463624_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002294491.1|1463773_1465063_+	glycoside hydrolase family 125 protein	NA	NA	NA	NA	NA
WP_002285985.1|1465075_1467778_+	alpha-mannosidase	NA	NA	NA	NA	NA
WP_002285988.1|1467762_1468620_+	ROK family protein	NA	NA	NA	NA	NA
WP_002285989.1|1468690_1469548_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_002294492.1|1469758_1471930_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_002285994.1|1471997_1472339_+	YlbF family regulator	NA	A0A1X9I5Y8	Streptococcus_phage	34.9	1.3e-10
WP_002302556.1|1472614_1474369_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.9	4.1e-39
WP_002285996.1|1474379_1475216_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA	NA
WP_002294493.1|1475217_1475901_-	rhamnogalacturonan acetylesterase	NA	NA	NA	NA	NA
WP_002297218.1|1476055_1477351_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
>prophage 9
NZ_CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	1789351	1838063	2817746	tRNA,tail,transposase,terminase,head,portal	Enterococcus_phage(26.09%)	57	NA	NA
WP_086956687.1|1789351_1790514_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002287966.1|1790722_1791097_+	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_002348865.1|1791210_1791840_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_002294080.1|1792929_1794258_+	aminopeptidase C	NA	R4TV59	Phaeocystis_globosa_virus	38.1	7.3e-73
WP_002287963.1|1794459_1795293_+	phosphotransferase	NA	NA	NA	NA	NA
WP_002287962.1|1795308_1796046_+	acyl-ACP thioesterase	NA	NA	NA	NA	NA
WP_002287961.1|1796200_1797169_-	asparaginase	NA	NA	NA	NA	NA
WP_002287960.1|1797400_1798234_+	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_002287959.1|1798267_1799107_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002287958.1|1799132_1799693_+	haloacid dehalogenase	NA	A0A0H3UZF4	Geobacillus_virus	45.1	2.3e-28
WP_002287957.1|1799891_1801613_+	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
WP_002287956.1|1801777_1802920_+	cysteine desulfurase	NA	NA	NA	NA	NA
WP_002287955.1|1802935_1804147_+|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_002287954.1|1804719_1805367_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_002287953.1|1805759_1808405_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	42.9	4.0e-163
WP_002294071.1|1808714_1810028_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_002287951.1|1810017_1810671_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_002304462.1|1810725_1811397_+	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_002303263.1|1811291_1812644_-	recombinase family protein	NA	D2IZV7	Enterococcus_phage	55.3	1.7e-133
WP_002303264.1|1812709_1813999_-	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	74.0	5.6e-46
WP_002303265.1|1814085_1814790_-	LexA family transcriptional regulator	NA	D7RWF2	Brochothrix_phage	42.4	6.2e-39
WP_002303266.1|1814989_1815256_+	helix-turn-helix transcriptional regulator	NA	A0A1W6JP54	Staphylococcus_phage	52.7	5.4e-12
WP_002304464.1|1815423_1815654_-	DUF2188 domain-containing protein	NA	E8ZD70	Streptococcus_phage	49.3	4.4e-10
WP_002299038.1|1815725_1815881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002304466.1|1816189_1816429_-	DUF2188 domain-containing protein	NA	E8ZD70	Streptococcus_phage	81.1	1.8e-27
WP_002303273.1|1816680_1817016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303275.1|1817248_1818190_+	endonuclease	NA	D2IZK1	Enterococcus_phage	78.9	2.7e-146
WP_002303277.1|1818191_1819082_+	hypothetical protein	NA	D2IYT9	Enterococcus_phage	84.5	6.2e-137
WP_002303278.1|1819124_1819925_+	hypothetical protein	NA	B4XYS6	Lactobacillus_phage	54.5	8.9e-58
WP_002304468.1|1819939_1820791_+	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	30.2	3.0e-27
WP_002304469.1|1820787_1821147_+	DUF1064 domain-containing protein	NA	A0A1P8BKR1	Lactococcus_phage	47.5	6.8e-18
WP_002292988.1|1821161_1821323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002350868.1|1821319_1821646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002304472.1|1821642_1822458_+	prohibitin family protein	NA	A0A288TXV9	Enterococcus_phage	69.4	1.8e-82
WP_002304473.1|1822596_1822908_+	hypothetical protein	NA	A0A0D3MVS9	Staphylococcus_phage	58.0	5.3e-27
WP_002304474.1|1822904_1823135_+	hypothetical protein	NA	A0A0S2MYD2	Enterococcus_phage	50.7	8.8e-11
WP_002304475.1|1823141_1823345_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286693.1|1823341_1823638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002322045.1|1823714_1824128_+	autolysin	NA	C9E2P5	Enterococcus_phage	80.3	2.5e-56
WP_002304480.1|1824140_1824527_+	hypothetical protein	NA	O34053	Streptococcus_phage	55.2	1.9e-29
WP_002311618.1|1825077_1825302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002304484.1|1825319_1825748_+	hypothetical protein	NA	A0A1P8BMH5	Lactococcus_phage	63.1	2.6e-40
WP_002304486.1|1825725_1827144_+|terminase	phage terminase large subunit	terminase	A0A090EUA8	Clostridium_phage	51.5	2.5e-124
WP_002343932.1|1827155_1828691_+|portal	phage portal protein	portal	NA	NA	NA	NA
WP_033582200.1|1828770_1829649_+|head	phage head morphogenesis protein	head	NA	NA	NA	NA
WP_002304492.1|1829650_1829968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002350777.1|1830016_1830718_+	DUF4355 domain-containing protein	NA	NA	NA	NA	NA
WP_002312521.1|1830732_1831623_+	DUF5309 domain-containing protein	NA	NA	NA	NA	NA
WP_002311614.1|1831645_1831861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002298050.1|1831872_1832214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002298048.1|1832213_1832585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002298046.1|1832577_1832973_+	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_002298045.1|1832974_1833352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303295.1|1833352_1833961_+|tail	tail protein	tail	NA	NA	NA	NA
WP_002303297.1|1833960_1834302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305859.1|1834543_1837333_+	tape measure protein	NA	D7RWD8	Brochothrix_phage	40.2	8.4e-71
WP_002303299.1|1837322_1838063_+|tail	tail protein	tail	NA	NA	NA	NA
>prophage 10
NZ_CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	2038333	2226848	2817746	transposase,protease,tRNA	Streptococcus_phage(25.0%)	170	NA	NA
WP_002305598.1|2038333_2039251_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_002348661.1|2039252_2041328_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_002348662.1|2041707_2042487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296209.1|2042532_2043477_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_002348663.1|2043492_2044272_+	tyrosine protein kinase	NA	NA	NA	NA	NA
WP_002348664.1|2044283_2044982_+	CpsD/CapB family tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	37.1	6.0e-26
WP_002312256.1|2045009_2045774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002312258.1|2046094_2047546_+	sugar transferase	NA	NA	NA	NA	NA
WP_002312259.1|2047923_2049174_+	nucleotide sugar dehydrogenase	NA	M1IB49	Acanthocystis_turfacea_Chlorella_virus	50.4	8.9e-105
WP_002325817.1|2049187_2049649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002291721.1|2049665_2050145_+	EpsH	NA	NA	NA	NA	NA
WP_002312264.1|2050164_2051232_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_002312270.1|2051799_2052861_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	36.5	1.5e-12
WP_002312275.1|2055099_2055819_+	glycosyl transferase	NA	A0A2K9L639	Tupanvirus	25.0	2.6e-08
WP_002312276.1|2055833_2056919_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_002348669.1|2057054_2058587_+	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_002312280.1|2058764_2058986_+	transferase	NA	NA	NA	NA	NA
WP_002312281.1|2059567_2060185_+	VanZ family protein	NA	NA	NA	NA	NA
WP_002312282.1|2060181_2060712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010782560.1|2061577_2062537_-|transposase	IS30-like element IS6770 family transposase	transposase	NA	NA	NA	NA
WP_002312284.1|2063341_2063542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002312285.1|2063720_2064671_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_002289551.1|2065108_2065384_-	acylphosphatase	NA	NA	NA	NA	NA
WP_002294889.1|2065491_2066256_+	RNA methyltransferase	NA	A0A2D1A6G0	Rhodococcus_phage	26.1	1.7e-05
WP_002348853.1|2066378_2066882_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_002289547.1|2068098_2069367_+	voltage-gated chloride channel family protein	NA	A0A1X9I5Z9	Streptococcus_phage	31.1	2.2e-42
WP_002340453.1|2069393_2070593_-	YdcF family protein	NA	NA	NA	NA	NA
WP_002304680.1|2070711_2072019_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
WP_002288760.1|2072489_2073608_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297185.1|2074059_2075355_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002323868.1|2075632_2075953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288762.1|2076404_2076605_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	74.2	2.5e-22
WP_002304681.1|2076751_2079541_+	DEAD/DEAH box helicase family protein	NA	A0A1X9I5C8	Streptococcus_phage	30.9	1.1e-89
WP_002348809.1|2079587_2080115_+	DUF5590 domain-containg protein	NA	NA	NA	NA	NA
WP_002304682.1|2080135_2081326_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_002288767.1|2081365_2082664_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.3	1.2e-59
WP_002304684.1|2083716_2084391_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_002326717.1|2084387_2084729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288776.1|2084758_2085118_+	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_002304688.1|2085641_2087723_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.6	2.4e-115
WP_002288779.1|2088033_2089500_+	amino acid permease	NA	NA	NA	NA	NA
WP_002304690.1|2090114_2090654_+	topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	34.5	3.8e-20
WP_002294855.1|2090727_2091168_+	CopY/TcrY family copper transport repressor	NA	NA	NA	NA	NA
WP_002289040.1|2091180_2091390_+	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_002312937.1|2091389_2093576_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	38.6	5.3e-121
WP_002299539.1|2093595_2095767_+	copper/silver-translocating P-type ATPase CopB	NA	A0A218MNH6	uncultured_virus	32.3	5.0e-71
WP_002304699.1|2099561_2100503_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_002304700.1|2100647_2101496_-	MoxR family ATPase	NA	NA	NA	NA	NA
WP_002294839.1|2101849_2102662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002304701.1|2102815_2103139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294835.1|2103212_2103782_+	prevent-host-death protein	NA	NA	NA	NA	NA
WP_002301695.1|2104218_2104911_+	hypothetical protein	NA	Q9MCC6	Lactobacillus_phage	43.4	4.0e-30
WP_099745852.1|2104950_2106290_-|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	3.4e-78
WP_099098442.1|2106394_2107556_+|transposase	IS3-like element ISEfa8 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.2	1.8e-80
WP_002295743.1|2107858_2108767_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002326711.1|2108928_2110107_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_008266934.1|2110363_2110777_+	DUF4231 domain-containing protein	NA	NA	NA	NA	NA
WP_002295273.1|2111008_2111266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297404.1|2111551_2112802_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002301623.1|2113211_2114186_+	choloylglycine hydrolase family protein	NA	M1HVK5	Paramecium_bursaria_Chlorella_virus	31.8	7.1e-25
WP_002301399.1|2114308_2115268_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_002326708.1|2116009_2116327_+	SdpI family protein	NA	NA	NA	NA	NA
WP_002289810.1|2116417_2116783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002300070.1|2116990_2117473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289807.1|2117669_2118560_+	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA	NA
WP_002326707.1|2118846_2120121_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.9	9.5e-54
WP_002297196.1|2120393_2122865_+	cation-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	28.8	7.0e-45
WP_002303966.1|2122967_2124704_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.1	1.2e-27
WP_002293705.1|2124700_2125405_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.2	1.4e-38
WP_002297194.1|2125535_2126039_+	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_002293708.1|2125998_2126337_+	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_002293709.1|2126357_2127776_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_002293710.1|2127887_2128466_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_002297192.1|2128469_2128991_+	dihydrofolate reductase	NA	NA	NA	NA	NA
WP_002293714.1|2129069_2129624_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	29.3	2.3e-12
WP_002290274.1|2129876_2130152_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_002290277.1|2130163_2130415_+	KH domain-containing protein	NA	NA	NA	NA	NA
WP_002297190.1|2130539_2131331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002293716.1|2131500_2132022_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_002293717.1|2132011_2132773_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_002286913.1|2132908_2133256_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_002288970.1|2133513_2133807_+	DUF2087 domain-containing protein	NA	NA	NA	NA	NA
WP_002296840.1|2134664_2135852_+|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
WP_002303963.1|2136123_2138451_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_025477176.1|2138576_2138906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157999241.1|2138945_2139950_+	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
WP_002288982.1|2141581_2142754_+	class C sortase	NA	NA	NA	NA	NA
WP_002303955.1|2142915_2143371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288984.1|2143959_2144382_+	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_002322902.1|2144547_2145741_-	MFS transporter	NA	NA	NA	NA	NA
WP_002302962.1|2145964_2146342_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002321036.1|2146329_2146668_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002288989.1|2146801_2147245_+	LysR family transcriptional regulator substrate-binding protein	NA	NA	NA	NA	NA
WP_002303949.1|2147506_2148322_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002300930.1|2148331_2148994_+	DUF624 domain-containing protein	NA	NA	NA	NA	NA
WP_002289620.1|2149198_2150863_+	acetolactate synthase AlsS	NA	NA	NA	NA	NA
WP_002289619.1|2150875_2151586_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_002289618.1|2151715_2152213_+	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_002289617.1|2152397_2152658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321266.1|2153019_2153259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000997695.1|2153595_2154774_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002302293.1|2155212_2155515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288592.1|2156271_2157045_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002288595.1|2157188_2157539_+	SdpI family protein	NA	NA	NA	NA	NA
WP_002288590.1|2157519_2158236_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.7	1.0e-33
WP_002288588.1|2158235_2159684_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	1.7e-19
WP_002288586.1|2159753_2160263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296838.1|2160252_2160978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303943.1|2161200_2163321_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.0	8.2e-220
WP_002288581.1|2163550_2164729_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	48.9	3.9e-102
WP_002288579.1|2164744_2165503_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	36.4	1.9e-25
WP_002288577.1|2165525_2166011_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_002288576.1|2166081_2167335_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	7.7e-24
WP_002288575.1|2167451_2168801_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_002288574.1|2168912_2170259_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000122610.1|2170477_2171770_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.9	3.2e-57
WP_002288573.1|2172073_2172460_-	YxeA family protein	NA	NA	NA	NA	NA
WP_002326704.1|2172508_2173417_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002311774.1|2173629_2174589_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	27.2	7.5e-11
WP_002297633.1|2175452_2175665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287775.1|2175942_2177742_-	glycerophosphoryl diester phosphodiesterase	NA	I6XE30	Staphylococcus_phage	26.5	5.3e-10
WP_002287776.1|2177865_2178462_-	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	41.7	8.7e-34
WP_002301399.1|2178651_2179611_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_002296337.1|2179876_2180221_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_002296335.1|2180732_2181083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002348678.1|2181048_2182380_-	DUF1576 domain-containing protein	NA	NA	NA	NA	NA
WP_002296332.1|2182634_2183201_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002303934.1|2183766_2184741_+	choloylglycine hydrolase family protein	NA	M1H001	Paramecium_bursaria_Chlorella_virus	29.7	3.0e-23
WP_002288533.1|2185065_2186961_+	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y2L7	Organic_Lake_phycodnavirus	26.2	6.0e-20
WP_002288531.1|2187155_2187602_-	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_002296119.1|2187829_2187979_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002296121.1|2188066_2188585_+	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	39.1	7.1e-24
WP_010782564.1|2188661_2189618_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002293905.1|2189783_2190590_+	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	32.1	1.0e-13
WP_002293904.1|2190586_2191576_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002301321.1|2191572_2192577_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002289886.1|2192708_2193251_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_002289885.1|2193270_2193969_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_002293902.1|2193989_2194202_+	YqgQ family protein	NA	NA	NA	NA	NA
WP_002288462.1|2194201_2195164_+	ROK family glucokinase	NA	NA	NA	NA	NA
WP_002288461.1|2195181_2195577_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_002288459.1|2195739_2196105_+	DUF488 family protein	NA	NA	NA	NA	NA
WP_002288458.1|2196101_2197913_+	FAD/NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_002288457.1|2197974_2198142_-	DUF3042 family protein	NA	NA	NA	NA	NA
WP_002288452.1|2198389_2199379_+	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	36.8	2.1e-48
WP_002288451.1|2199390_2200875_+	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_002288449.1|2200898_2201879_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.9	5.8e-19
WP_002288447.1|2201967_2202792_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_002348676.1|2202775_2203318_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_002288445.1|2203324_2203789_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_002301319.1|2203785_2204802_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.0	5.4e-60
WP_002326809.1|2205465_2206761_-|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	5.0e-10
WP_002288442.1|2206932_2207634_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_002288439.1|2208094_2209324_+	arginine deiminase	NA	NA	NA	NA	NA
WP_002288437.1|2209414_2210434_+	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_002288434.1|2210548_2211496_+	carbamate kinase	NA	NA	NA	NA	NA
WP_002288432.1|2211915_2213607_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.6	2.9e-74
WP_002288430.1|2214059_2214605_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_002326699.1|2214608_2214737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002326698.1|2214729_2215821_-	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA	NA
WP_002293881.1|2216037_2216517_-	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002293880.1|2216875_2217658_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_002293878.1|2217756_2218638_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_002293877.1|2218773_2219496_+	UMP kinase	NA	NA	NA	NA	NA
WP_002293875.1|2219498_2220056_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_002287107.1|2220373_2221624_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002294134.1|2222032_2222845_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	46.8	2.0e-25
WP_002294135.1|2222841_2223642_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_002294136.1|2223802_2225071_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_002294137.1|2225138_2226848_+|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
>prophage 11
NZ_CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	2361195	2410058	2817746	transposase,integrase,protease,tRNA	Streptococcus_phage(23.08%)	51	2361070:2361087	2394228:2394245
2361070:2361087	attL	AAAATAAGAAAATGTTGT	NA	NA	NA	NA
WP_002288335.1|2361195_2361897_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_002288338.1|2361893_2363015_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_002288340.1|2363029_2364262_+	peptidase T	NA	NA	NA	NA	NA
WP_002288343.1|2364393_2365302_+	YegS/Rv2252/BmrU family lipid kinase	NA	NA	NA	NA	NA
WP_002305633.1|2365336_2365609_+	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_002288347.1|2365619_2366666_+	flippase-like domain-containing protein	NA	NA	NA	NA	NA
WP_002301554.1|2366916_2369526_+	ATP-dependent chaperone ClpB	NA	A0A2I7SAX5	Vibrio_phage	35.0	1.6e-132
WP_002288350.1|2369676_2370348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288352.1|2370340_2370835_-	nucleoside deoxyribosyltransferase	NA	A0A1W6JK28	Lactococcus_phage	56.5	7.2e-42
WP_002288353.1|2370854_2372075_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002288355.1|2372221_2374057_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.4	3.4e-20
WP_002288357.1|2374150_2375278_-|integrase	site-specific integrase	integrase	A0A2I7SCV1	Paenibacillus_phage	55.5	1.8e-109
WP_000222572.1|2375334_2376288_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_000997695.1|2376443_2377622_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002321532.1|2377867_2378158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002322258.1|2378275_2378536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289415.1|2378672_2379086_-	Hsp20/alpha crystallin family protein	NA	A0A1B2LRT2	Wolbachia_phage	31.5	2.1e-07
WP_002303864.1|2379541_2380027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305631.1|2380165_2380411_-	DUF378 domain-containing protein	NA	NA	NA	NA	NA
WP_002289420.1|2380603_2381404_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	26.2	2.6e-09
WP_002348791.1|2381422_2383291_+	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_002289422.1|2383283_2383775_+	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002289423.1|2383762_2384317_+	PTS sorbitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_002289425.1|2384334_2385330_+	PTS glucitol/sorbitol transporter subunit IIB	NA	NA	NA	NA	NA
WP_002287107.1|2385471_2386722_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002296624.1|2387130_2387529_+	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA	NA
WP_002311093.1|2387512_2388208_+	fructose-6-phosphate aldolase	NA	E3SKN5	Synechococcus_phage	31.5	1.0e-22
WP_002296627.1|2388791_2389679_-	rotamase	NA	NA	NA	NA	NA
WP_002296628.1|2389863_2390703_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002296629.1|2390898_2391873_+	LPXTG-anchored fibrinogen/nidogen-binding adhesin SgrA	NA	NA	NA	NA	NA
WP_002296631.1|2392170_2392527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296632.1|2392529_2393687_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296633.1|2393712_2394153_-	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
WP_002296634.1|2394312_2394819_+	cysteine hydrolase	NA	NA	NA	NA	NA
2394228:2394245	attR	AAAATAAGAAAATGTTGT	NA	NA	NA	NA
WP_002311095.1|2394986_2396900_+	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA	NA
WP_002296637.1|2396904_2397906_+	alpha/beta hydrolase	NA	M1PGN2	Moumouvirus	31.8	2.5e-09
WP_002296638.1|2398107_2398314_-	DUF3955 domain-containing protein	NA	NA	NA	NA	NA
WP_002296639.1|2398959_2399808_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002296640.1|2399970_2400873_+	decarboxylating 6-phosphogluconate dehydrogenase	NA	A0A1D8KGX1	Synechococcus_phage	35.3	3.3e-53
WP_002296641.1|2400874_2401876_+	2-hydroxyacid dehydrogenase	NA	M1H9J0	Paramecium_bursaria_Chlorella_virus	29.0	2.8e-24
WP_002321677.1|2401872_2402157_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_002303106.1|2402189_2402987_+	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_002296646.1|2403000_2403834_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002303107.1|2403851_2404709_+	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_002296648.1|2404730_2405240_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002296650.1|2405276_2405678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321678.1|2405789_2406143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296653.1|2406176_2406620_+	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002296654.1|2406636_2407722_+	mannonate dehydratase	NA	NA	NA	NA	NA
WP_002296656.1|2407714_2408428_+	HAD family phosphatase	NA	A0A1D8KPI1	Synechococcus_phage	23.0	5.4e-06
WP_002302440.1|2408756_2410058_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.6	1.6e-48
>prophage 12
NZ_CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	2706847	2715908	2817746		Synechococcus_phage(16.67%)	9	NA	NA
WP_002288010.1|2706847_2707426_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	1.3e-26
WP_002321731.1|2707422_2708466_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.7	2.7e-62
WP_002288013.1|2708497_2709937_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	5.3e-53
WP_002288015.1|2709921_2712144_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.3	1.9e-150
WP_002288017.1|2712144_2712816_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002295474.1|2712817_2713072_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002288021.1|2713071_2713800_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.4	4.6e-45
WP_002297115.1|2714055_2714433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288023.1|2714612_2715908_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	4.5e-19
>prophage 13
NZ_CP025754	Enterococcus faecium strain AALTL chromosome, complete genome	2817746	2743777	2804784	2817746	transposase,protease,tRNA	Bacillus_virus(12.5%)	58	NA	NA
WP_002296623.1|2743777_2745073_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.5	3.9e-55
WP_002347134.1|2745061_2745544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000997695.1|2745703_2746882_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002295437.1|2748005_2748296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002326685.1|2749589_2750213_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A249XZV3	Enterococcus_phage	56.4	3.9e-37
WP_002297012.1|2750296_2751019_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_002297010.1|2751008_2751746_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_002297008.1|2751757_2752750_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002297003.1|2752764_2753508_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002289757.1|2753748_2755071_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002289763.1|2755057_2756023_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.9	2.0e-27
WP_002289765.1|2756019_2757558_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_002289767.1|2757973_2758261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297002.1|2758394_2759063_+	membrane protein	NA	NA	NA	NA	NA
WP_002285758.1|2759328_2759523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287659.1|2759512_2759866_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_002303202.1|2759967_2761515_+|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
WP_002289257.1|2761706_2762447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289258.1|2762576_2763524_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_002289259.1|2763652_2764417_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_002297001.1|2764420_2764810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289260.1|2764944_2765487_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_002289266.1|2765634_2766267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296999.1|2766400_2766526_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002289262.1|2766659_2767553_-	DUF1803 domain-containing protein	NA	NA	NA	NA	NA
WP_002289263.1|2767734_2768661_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_002289264.1|2768745_2769507_-	pyruvate formate lyase-activating protein	NA	NA	NA	NA	NA
WP_002289265.1|2769750_2771982_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	42.5	2.4e-169
WP_002303213.1|2772258_2774709_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.6	9.2e-98
WP_002303746.1|2774720_2776766_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	41.3	2.4e-115
WP_002296996.1|2776931_2777366_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_002296995.1|2777492_2778131_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_002297218.1|2778311_2779607_+|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002296994.1|2779784_2780660_-	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_002290223.1|2780741_2781533_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_002288421.1|2781550_2782951_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A173GFL6	Erwinia_phage	28.8	1.7e-43
WP_002288419.1|2782964_2783513_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
WP_002288415.1|2783549_2784455_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	29.4	9.4e-32
WP_002320953.1|2784652_2786029_-|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_002288411.1|2785997_2788076_-	type I DNA topoisomerase	NA	A0A167R9A0	Powai_lake_megavirus	38.5	1.2e-101
WP_002303743.1|2788197_2789055_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_002296990.1|2789110_2789878_-	ribonuclease HII	NA	D2TEQ2	Emiliania_huxleyi_virus	39.5	2.7e-27
WP_002296988.1|2789870_2790731_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_002288405.1|2790990_2791389_+	glyoxalase	NA	NA	NA	NA	NA
WP_002288403.1|2791625_2792168_+	folate family ECF transporter S component	NA	NA	NA	NA	NA
WP_002294418.1|2792250_2792802_-	signal peptidase I	NA	NA	NA	NA	NA
WP_002288398.1|2792953_2793181_-	YozE family protein	NA	NA	NA	NA	NA
WP_002288397.1|2793177_2793696_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_002288396.1|2793715_2794429_-	YpmS family protein	NA	NA	NA	NA	NA
WP_002288395.1|2794431_2795328_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_002288394.1|2795485_2796328_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	40.2	6.5e-19
WP_002288393.1|2796459_2797113_+	hemolysin III family protein	NA	NA	NA	NA	NA
WP_002288392.1|2797175_2797703_-	dihydrofolate reductase	NA	A0A1D6X864	Bacillus_phage	37.1	6.7e-22
WP_002294416.1|2797722_2798670_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	64.6	7.1e-123
WP_002288390.1|2798681_2800568_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.6e-52
WP_002288388.1|2800727_2802806_-	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_002290188.1|2802818_2803094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297185.1|2803488_2804784_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
>prophage 1
NZ_CP025755	Enterococcus faecium strain AALTL plasmid pEFA-790c, complete sequence	35515	3998	11367	35515	transposase	Streptococcus_phage(100.0%)	9	NA	NA
WP_011117477.1|3998_4685_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.7	6.5e-126
WP_001814874.1|4824_4908_+	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_001038792.1|5032_5770_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.2	7.0e-134
WP_000085862.1|5774_5906_+	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	100.0	7.9e-17
WP_000567888.1|7063_7309_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_000228166.1|7411_8281_+	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	95.8	4.3e-159
WP_000662263.1|8261_8996_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_000627290.1|9937_10480_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	100.0	8.9e-94
WP_001096887.1|10572_11367_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
>prophage 2
NZ_CP025755	Enterococcus faecium strain AALTL plasmid pEFA-790c, complete sequence	35515	26027	35095	35515	transposase	Streptococcus_phage(57.14%)	9	NA	NA
WP_000754864.1|26027_26357_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	44.6	2.6e-16
WP_000629052.1|26661_26991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000312841.1|26980_27268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000017403.1|27546_28110_-	recombinase family protein	NA	A0A219Y9V9	Aeromonas_phage	46.4	2.3e-36
WP_000222571.1|28752_29706_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.1	1.3e-34
WP_002354485.1|30562_31249_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_016171138.1|31296_32556_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.2	1.1e-54
WP_010782630.1|32705_33320_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	30.9	4.9e-16
WP_000969590.1|33769_35095_+	Y-family DNA polymerase	NA	M1Q231	Streptococcus_phage	44.0	6.3e-101
>prophage 1
NZ_CP025756	Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence	258454	0	63133	258454	transposase,integrase	Streptococcus_phage(22.22%)	59	28796:28810	46623:46637
WP_099745857.1|1474_2161_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	7.7e-127
WP_000195429.1|2784_3957_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_002303110.1|5787_6825_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	28.5	7.1e-07
WP_002303111.1|6821_7334_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_002304894.1|7391_7658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303113.1|8333_8885_-	DUF334 domain-containing protein	NA	NA	NA	NA	NA
WP_002319817.1|9429_10110_+|transposase	IS6-like element ISS1N family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	2.5e-109
WP_002304893.1|10137_10701_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	34.9	2.2e-18
WP_000824191.1|10745_10913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000366408.1|10946_11246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001224538.1|11286_11904_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	33.1	5.1e-13
WP_002304891.1|12228_12624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000344083.1|12703_15055_-	DUF1906 domain-containing protein	NA	NA	NA	NA	NA
WP_000718009.1|15179_15869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000751236.1|15882_16335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002325565.1|16465_17146_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	1.3e-126
WP_002300494.1|17247_18567_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_002285815.1|18563_19217_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.2	4.0e-24
WP_002348630.1|19926_20643_-	aminotransferase class V-fold PLP-dependent enzyme	NA	Q2XUY6	environmental_halophage	50.0	4.5e-45
WP_016922460.1|20766_20952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002302261.1|22558_23590_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.6	1.8e-26
WP_002313180.1|23596_24427_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002302265.1|24423_25230_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002302267.1|25235_26060_-	type I phosphodiesterase/nucleotide pyrophosphatase	NA	NA	NA	NA	NA
WP_002347701.1|26049_27150_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002302270.1|27327_28113_+	histidinol phosphate phosphatase	NA	NA	NA	NA	NA
WP_002330694.1|28145_28529_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077828694.1|28604_28736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002322470.1|28704_28941_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
28796:28810	attL	ATGAGGGCTTTTTCG	NA	NA	NA	NA
WP_002302275.1|29018_29990_-	radical SAM protein	NA	NA	NA	NA	NA
WP_002340465.1|30641_32264_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.5	2.7e-122
WP_002301195.1|32549_33926_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002298083.1|33925_34582_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.1	1.3e-22
WP_002301194.1|34591_35869_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_087121905.1|36118_37280_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.2	4.1e-80
WP_002330699.1|37310_37760_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_010706480.1|37915_38266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099745858.1|38732_39894_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	53.8	1.2e-79
WP_002349250.1|40519_41044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002326839.1|41068_41977_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002301108.1|42652_43207_-|integrase	tyrosine-type recombinase/integrase	integrase	W8CYP1	Bacillus_phage	46.1	8.6e-36
WP_002316137.1|46326_47499_+|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	98.4	1.1e-133
46623:46637	attR	CGAAAAAGCCCTCAT	NA	NA	NA	NA
WP_002303163.1|48778_49642_-	triphosphoribosyl-dephospho-CoA synthase CitG	NA	NA	NA	NA	NA
WP_002305953.1|49634_50192_-	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA	NA
WP_002303161.1|50188_51748_-	citrate lyase subunit alpha	NA	NA	NA	NA	NA
WP_002303160.1|51740_52646_-	citrate (pro-3S)-lyase subunit beta	NA	NA	NA	NA	NA
WP_002303159.1|52650_52944_-	citrate lyase acyl carrier protein	NA	NA	NA	NA	NA
WP_002303158.1|52947_53961_-	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA	NA
WP_002303157.1|53986_55291_-	2-hydroxycarboxylate transporter family protein	NA	NA	NA	NA	NA
WP_002303156.1|55271_56459_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_002303155.1|56646_57594_+	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_002292681.1|57890_58439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002292680.1|58439_59297_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	30.7	8.1e-33
WP_002300557.1|59582_59870_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_002292678.1|59859_60189_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_002305108.1|60265_60538_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_002303154.1|60537_60801_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_002303153.1|60906_61323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_102642289.1|61971_63133_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	50.9	1.5e-77
>prophage 2
NZ_CP025756	Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence	258454	75063	131125	258454	transposase,integrase	Streptococcus_phage(26.32%)	49	74412:74427	83916:83931
74412:74427	attL	TCTTTTAAATGTTTTA	NA	NA	NA	NA
WP_002303240.1|75063_75519_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_002303241.1|76036_76987_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_008269238.1|77525_77642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002348634.1|78990_80289_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_010782529.1|80655_81564_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_010782535.1|82026_83319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002348758.1|83293_85066_-	AAA domain-containing protein	NA	K4I1H4	Acidithiobacillus_phage	36.1	2.1e-19
83916:83931	attR	TCTTTTAAATGTTTTA	NA	NA	NA	NA
WP_002348764.1|86702_87545_-	glycosyltransferase family 8 protein	NA	NA	NA	NA	NA
WP_002348763.1|87681_89061_-	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
WP_025480881.1|89210_89666_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	53.5	2.3e-34
WP_002348761.1|89655_90321_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_002348760.1|90467_90911_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA	NA
WP_010782532.1|90959_91310_+	hypothetical protein	NA	A0A096XT60	Enterococcus_phage	43.8	6.0e-19
WP_010782694.1|91391_92345_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.1	1.8e-33
WP_010782530.1|92268_93441_-	S8 family serine peptidase	NA	A0A217EQY2	Bacillus_phage	33.5	1.5e-13
WP_002348804.1|93470_94199_-	hypothetical protein	NA	A0A1B0T6A2	Bacillus_phage	26.5	6.3e-10
WP_002292681.1|94458_95007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002292680.1|95007_95865_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	30.7	8.1e-33
WP_002313074.1|96150_96438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002292678.1|96427_96757_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_016171159.1|100020_100893_-	ROK family protein	NA	NA	NA	NA	NA
WP_002322556.1|100909_102382_-	glycoside hydrolase family 32 protein	NA	NA	NA	NA	NA
WP_002313079.1|102395_103244_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002348858.1|103240_104107_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002348859.1|104149_105508_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_016171162.1|105602_106574_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	22.4	1.2e-05
WP_002313084.1|107608_108214_+	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	32.6	3.6e-19
WP_002340501.1|108259_108439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016171164.1|110046_110955_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_002342383.1|111013_112816_-	exonuclease DNA polymerase III epsilon subunit	NA	A0A0A7RWA3	Clostridium_phage	30.4	7.6e-33
WP_002342384.1|112878_113721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002331328.1|113736_113958_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_085910366.1|114447_115134_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	5.9e-127
WP_002339142.1|115191_116412_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	58.5	3.9e-57
WP_002339141.1|116431_117043_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	53.2	1.7e-56
WP_002339140.1|117085_118018_-	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_002339139.1|118442_119300_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_085910366.1|119446_120133_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	5.9e-127
WP_002296843.1|120239_120428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076065465.1|120572_121259_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.2	4.2e-125
WP_002290394.1|121728_122046_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_002303208.1|122046_122301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287522.1|122659_123064_+|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002323589.1|123080_124229_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.7	9.0e-205
WP_002348857.1|124935_125130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303636.1|126481_127522_+	replication protein RepA	NA	NA	NA	NA	NA
WP_002323647.1|128345_128678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002295674.1|129296_129638_+	DUF5406 domain-containing protein	NA	F0PIH7	Enterococcus_phage	62.5	1.5e-35
WP_002297404.1|129874_131125_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
>prophage 3
NZ_CP025756	Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence	258454	139391	147031	258454	transposase	Temperate_phage(16.67%)	14	NA	NA
WP_002321302.1|139391_139865_+	single-stranded DNA-binding protein	NA	Q938M7	Temperate_phage	62.0	5.6e-44
WP_002321303.1|140230_140491_+	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	51.4	3.4e-11
WP_002296239.1|140935_141142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305766.1|141141_141393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305764.1|141408_141825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002348912.1|141806_142079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305759.1|142245_142647_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	43.1	1.4e-24
WP_002305757.1|142658_143804_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	D9J0Y9	Brochothrix_phage	74.6	7.7e-164
WP_002287514.1|144041_144305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321032.1|144298_144649_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_002318230.1|144672_145287_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	31.9	2.6e-17
WP_002288787.1|145600_146023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002299573.1|146032_146236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002299575.1|146446_147031_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	5.9e-43
>prophage 4
NZ_CP025756	Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence	258454	164007	203305	258454	transposase,holin,bacteriocin,protease	Streptococcus_phage(37.5%)	41	NA	NA
WP_002300034.1|164007_166065_-|protease	serine protease	protease	NA	NA	NA	NA
WP_002300033.1|166209_166401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002300032.1|166588_167044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305782.1|167040_167283_+	DUF5415 family protein	NA	NA	NA	NA	NA
WP_002302862.1|167300_167603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302860.1|167671_169726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302859.1|169725_172338_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_002302858.1|172334_174713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302857.1|174773_175316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302856.1|175393_175726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302855.1|175726_176320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302854.1|176341_178366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_102642290.1|178365_179565_+	peptidoglycan DD-metalloendopeptidase family protein	NA	Q6SEC2	Lactobacillus_prophage	38.1	2.5e-32
WP_002302852.1|179580_180225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302851.1|180235_181042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033582323.1|181452_182388_+	DUF4199 domain-containing protein	NA	NA	NA	NA	NA
WP_002305788.1|182431_182701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302849.1|182976_183252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302844.1|183293_183716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033582318.1|183735_185328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302842.1|185348_185684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302840.1|185829_186024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297404.1|186159_187410_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002305801.1|187819_190192_+	hypothetical protein	NA	B5SP25	Lactococcus_phage	29.7	3.4e-12
WP_002353594.1|190252_191722_+	DUF3991 domain-containing protein	NA	NA	NA	NA	NA
WP_002303486.1|191732_193742_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	52.6	1.6e-111
WP_002303484.1|194087_194684_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_002303483.1|194696_195596_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_002301801.1|195598_195730_+	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	83.3	1.3e-11
WP_002305808.1|195751_196084_+	single-stranded DNA-binding protein	NA	W6LM61	Streptococcus_phage	53.2	6.1e-21
WP_002303482.1|196128_196362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002295624.1|196520_196643_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_002305809.1|196832_197057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305810.1|197499_197706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002300797.1|197705_197957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002300801.1|198137_198410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002300804.1|198854_199034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002311569.1|199092_199449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000222572.1|200417_201371_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.8	3.7e-34
WP_002300807.1|201491_201755_+|bacteriocin	circular bacteriocin, circularin A/uberolysin family	bacteriocin	NA	NA	NA	NA
WP_000997695.1|202126_203305_+|transposase	IS256-like element ISEf1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.6	3.0e-30
