assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002886225.1_ASM288622v1	NZ_CP025600	Mycobacterium tuberculosis strain GG-77-11 chromosome, complete genome	1	338093-338315	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|398aa|up_9|NZ_CP025600.1_323345_324539_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP025600.1_324574_326257_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP025600.1_326273_328469_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP025600.1_328582_329716_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP025600.1_329712_330333_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP025600.1_330429_331011_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP025600.1_330940_331666_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP025600.1_331755_332676_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP025600.1_332715_333144_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|579aa|up_0|NZ_CP025600.1_333444_335181_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|537aa|down_0|NZ_CP025600.1_339352_340963_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP025600.1_340986_341895_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|614aa|down_2|NZ_CP025600.1_342172_344014_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP025600.1_344010_345627_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP025600.1_345623_349616_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP025600.1_349612_349921_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP025600.1_349923_351465_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP025600.1_351513_351807_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP025600.1_351836_352127_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP025600.1_352137_353025_+	pfam14011, ESX-1_EspG, EspG family
GCF_002886225.1_ASM288622v1	NZ_CP025600	Mycobacterium tuberculosis strain GG-77-11 chromosome, complete genome	2	338398-338632	2	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCCCCGCCGGCGCCGCCGGCGGCGCCGG	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|398aa|up_9|NZ_CP025600.1_323345_324539_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP025600.1_324574_326257_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP025600.1_326273_328469_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP025600.1_328582_329716_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP025600.1_329712_330333_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP025600.1_330429_331011_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP025600.1_330940_331666_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP025600.1_331755_332676_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP025600.1_332715_333144_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|579aa|up_0|NZ_CP025600.1_333444_335181_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|537aa|down_0|NZ_CP025600.1_339352_340963_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP025600.1_340986_341895_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|614aa|down_2|NZ_CP025600.1_342172_344014_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP025600.1_344010_345627_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP025600.1_345623_349616_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP025600.1_349612_349921_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP025600.1_349923_351465_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP025600.1_351513_351807_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP025600.1_351836_352127_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP025600.1_352137_353025_+	pfam14011, ESX-1_EspG, EspG family
GCF_002886225.1_ASM288622v1	NZ_CP025600	Mycobacterium tuberculosis strain GG-77-11 chromosome, complete genome	3	366452-367150	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366740-366781|366815-366847	NZ_CP025600.1_374771-374812|NZ_CP025600.1_373586-373618	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP025600.1_363464_363767_+,NA|161aa|down_1|NZ_CP025600.1_376560_377043_-,NA|410aa|down_5|NZ_CP025600.1_379159_380389_+	NA|262aa|up_9|NZ_CP025600.1_358159_358945_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP025600.1_358933_359737_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP025600.1_359746_361144_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP025600.1_361322_363098_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP025600.1_363240_363468_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP025600.1_363464_363767_+	NA	NA|74aa|up_3|NZ_CP025600.1_363814_364036_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP025600.1_364032_364458_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP025600.1_364593_365226_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP025600.1_365222_366131_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP025600.1_375901_376573_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP025600.1_376560_377043_-	NA	NA|239aa|down_2|NZ_CP025600.1_377100_377817_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP025600.1_377918_378575_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP025600.1_378644_379136_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP025600.1_379159_380389_+	NA	NA|621aa|down_6|NZ_CP025600.1_380543_382406_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP025600.1_382477_382864_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|212aa|down_8|NZ_CP025600.1_382866_383502_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP025600.1_383589_384474_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002886225.1_ASM288622v1	NZ_CP025600	Mycobacterium tuberculosis strain GG-77-11 chromosome, complete genome	4	691964-692040	2	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP025600.1_677648_677864_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP025600.1_677860_678268_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP025600.1_678327_679014_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP025600.1_679167_681801_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP025600.1_681823_684211_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP025600.1_684348_685071_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP025600.1_685067_685865_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP025600.1_685866_686754_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP025600.1_686759_687974_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP025600.1_688997_690443_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP025600.1_693175_694726_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP025600.1_694777_695170_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP025600.1_695166_695424_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP025600.1_695606_696842_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP025600.1_697092_697506_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP025600.1_697502_697739_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP025600.1_697842_698349_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP025600.1_698462_698933_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP025600.1_698976_699738_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP025600.1_699794_700106_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002886225.1_ASM288622v1	NZ_CP025600	Mycobacterium tuberculosis strain GG-77-11 chromosome, complete genome	5	926556-927503	1	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927339-927374|927339-927374|927339-927374	NZ_CP025600.1_675067-675032|NZ_CP025600.1_1213698-1213733|NZ_CP025600.1_2423742-2423707	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP025600.1_931504_932056_-	NA|685aa|up_9|NZ_CP025600.1_914192_916247_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP025600.1_916412_917582_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP025600.1_917669_918686_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP025600.1_918847_919489_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP025600.1_919569_920625_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP025600.1_920676_921069_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP025600.1_921126_921549_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|302aa|up_2|NZ_CP025600.1_921905_922811_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_1|NZ_CP025600.1_922829_923645_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|138aa|up_0|NZ_CP025600.1_924886_925300_+	pfam00934, PE, PE family	NA|880aa|down_0|NZ_CP025600.1_927772_930412_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP025600.1_930879_931524_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP025600.1_931504_932056_-	NA	NA|218aa|down_3|NZ_CP025600.1_932205_932859_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP025600.1_932929_933958_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP025600.1_934646_935417_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP025600.1_935503_936316_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP025600.1_936383_937244_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|431aa|down_8|NZ_CP025600.1_938038_939331_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|335aa|down_9|NZ_CP025600.1_939314_940319_+	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
GCF_002886225.1_ASM288622v1	NZ_CP025600	Mycobacterium tuberculosis strain GG-77-11 chromosome, complete genome	6	1191265-1191373	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP025600.1_1180632_1182264_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP025600.1_1182339_1183404_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP025600.1_1183456_1183930_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP025600.1_1183963_1184827_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP025600.1_1184831_1185689_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP025600.1_1185689_1186772_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP025600.1_1186852_1187272_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP025600.1_1187383_1187950_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP025600.1_1187946_1188342_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP025600.1_1188369_1190373_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP025600.1_1192458_1194222_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP025600.1_1194218_1194992_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP025600.1_1195003_1196041_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP025600.1_1196227_1197064_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP025600.1_1197179_1198031_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP025600.1_1198104_1199322_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP025600.1_1199374_1200319_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|298aa|down_7|NZ_CP025600.1_1200715_1201609_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP025600.1_1201665_1203060_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP025600.1_1203261_1203984_+	pfam06271, RDD, RDD family
GCF_002886225.1_ASM288622v1	NZ_CP025600	Mycobacterium tuberculosis strain GG-77-11 chromosome, complete genome	7	1211899-1212755	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	70	1212282-1212303|1212327-1212342|1212465-1212486|1212465-1212486|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600|1212582-1212600	NZ_CP025600.1_2960538-2960517|NZ_CP025600.1_2088548-2088533|NZ_CP025600.1_837370-837391|NZ_CP025600.1_1217593-1217614|NZ_CP025600.1_1572768-1572750|NZ_CP025600.1_674731-674713|NZ_CP025600.1_1213425-1213443|NZ_CP025600.1_1217566-1217584|NZ_CP025600.1_1217638-1217656|NZ_CP025600.1_1630639-1630621|NZ_CP025600.1_1990752-1990734|NZ_CP025600.1_2061476-2061458|NZ_CP025600.1_2061923-2061905|NZ_CP025600.1_2062022-2062004|NZ_CP025600.1_2802087-2802069|NZ_CP025600.1_2805615-2805597|NZ_CP025600.1_150188-150206|NZ_CP025600.1_333790-333772|NZ_CP025600.1_335209-335191|NZ_CP025600.1_335662-335644|NZ_CP025600.1_335713-335695|NZ_CP025600.1_335722-335704|NZ_CP025600.1_337992-337974|NZ_CP025600.1_338388-338370|NZ_CP025600.1_363042-363024|NZ_CP025600.1_443416-443398|NZ_CP025600.1_546741-546723|NZ_CP025600.1_623931-623949|NZ_CP025600.1_624153-624171|NZ_CP025600.1_673906-673888|NZ_CP025600.1_840153-840171|NZ_CP025600.1_1090924-1090942|NZ_CP025600.1_1091572-1091590|NZ_CP025600.1_1212954-1212972|NZ_CP025600.1_1213344-1213362|NZ_CP025600.1_1217986-1218004|NZ_CP025600.1_1489153-1489135|NZ_CP025600.1_1618603-1618585|NZ_CP025600.1_1619056-1619038|NZ_CP025600.1_1635978-1635960|NZ_CP025600.1_1635987-1635969|NZ_CP025600.1_1864266-1864248|NZ_CP025600.1_1864794-1864776|NZ_CP025600.1_1990026-1990008|NZ_CP025600.1_2001389-2001407|NZ_CP025600.1_2088746-2088728|NZ_CP025600.1_2303461-2303443|NZ_CP025600.1_2356916-2356898|NZ_CP025600.1_2419568-2419586|NZ_CP025600.1_2423655-2423637|NZ_CP025600.1_2569149-2569131|NZ_CP025600.1_2693456-2693474|NZ_CP025600.1_2795401-2795383|NZ_CP025600.1_2795983-2795965|NZ_CP025600.1_3054574-3054592|NZ_CP025600.1_3054673-3054691|NZ_CP025600.1_3705509-3705527|NZ_CP025600.1_3737486-3737468|NZ_CP025600.1_3738110-3738092|NZ_CP025600.1_3738353-3738335|NZ_CP025600.1_3738486-3738468|NZ_CP025600.1_3802346-3802364|NZ_CP025600.1_3802529-3802547|NZ_CP025600.1_3802697-3802715|NZ_CP025600.1_3930506-3930524|NZ_CP025600.1_3932236-3932254|NZ_CP025600.1_3940725-3940743|NZ_CP025600.1_3948728-3948746|NZ_CP025600.1_4031705-4031687|NZ_CP025600.1_4094230-4094248	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP025600.1_1207331_1207598_+,NA|61aa|down_2|NZ_CP025600.1_1215173_1215356_+,NA|35aa|down_3|NZ_CP025600.1_1215465_1215570_+	NA|465aa|up_9|NZ_CP025600.1_1201665_1203060_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP025600.1_1203261_1203984_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP025600.1_1204015_1205182_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP025600.1_1205252_1205747_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP025600.1_1205932_1206367_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP025600.1_1206468_1207335_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP025600.1_1207331_1207598_+	NA	NA|674aa|up_2|NZ_CP025600.1_1207584_1209606_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP025600.1_1209704_1210433_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP025600.1_1210543_1211332_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP025600.1_1213988_1214309_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|56aa|down_1|NZ_CP025600.1_1214994_1215162_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_2|NZ_CP025600.1_1215173_1215356_+	NA	NA|35aa|down_3|NZ_CP025600.1_1215465_1215570_+	NA	NA|152aa|down_4|NZ_CP025600.1_1215547_1216003_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_5|NZ_CP025600.1_1216417_1218979_+	pfam00934, PE, PE family	NA|313aa|down_6|NZ_CP025600.1_1219196_1220135_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_7|NZ_CP025600.1_1220522_1221803_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_8|NZ_CP025600.1_1221907_1222735_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|434aa|down_9|NZ_CP025600.1_1222945_1224247_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]
GCF_002886225.1_ASM288622v1	NZ_CP025600	Mycobacterium tuberculosis strain GG-77-11 chromosome, complete genome	8	2088218-2088472	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088299-2088316|2088299-2088316|2088389-2088406	NZ_CP025600.1_401067-401050|NZ_CP025600.1_607386-607369|NZ_CP025600.1_3450198-3450181	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP025600.1_2087577_2087841_-,NA	NA|165aa|up_9|NZ_CP025600.1_2073871_2074366_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|211aa|up_8|NZ_CP025600.1_2074814_2075447_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP025600.1_2075805_2078631_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP025600.1_2078857_2079718_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP025600.1_2079758_2080625_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP025600.1_2080629_2082516_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP025600.1_2082531_2084565_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP025600.1_2084684_2086910_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP025600.1_2087185_2087581_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP025600.1_2087577_2087841_-	NA	NA|346aa|down_0|NZ_CP025600.1_2089609_2090647_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP025600.1_2090646_2092014_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|480aa|down_2|NZ_CP025600.1_2092187_2093627_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP025600.1_2093659_2095111_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP025600.1_2095140_2096091_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP025600.1_2096105_2096522_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP025600.1_2096799_2097222_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP025600.1_2097270_2097573_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP025600.1_2097569_2097884_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP025600.1_2097883_2099617_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002886225.1_ASM288622v1	NZ_CP025600	Mycobacterium tuberculosis strain GG-77-11 chromosome, complete genome	9	2163325-2163429	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP025600.1_2159869_2160277_-,NA|127aa|down_6|NZ_CP025600.1_2176498_2176879_-	NA|155aa|up_9|NZ_CP025600.1_2153183_2153648_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP025600.1_2153837_2156060_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP025600.1_2156097_2156541_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP025600.1_2156654_2157248_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP025600.1_2157330_2157936_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP025600.1_2158035_2159040_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP025600.1_2159139_2159892_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP025600.1_2159869_2160277_-	NA	NA|368aa|up_1|NZ_CP025600.1_2160411_2161515_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_0|NZ_CP025600.1_2161514_2162711_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|988aa|down_0|NZ_CP025600.1_2167597_2170561_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP025600.1_2171009_2171474_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP025600.1_2171571_2172435_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP025600.1_2172472_2173744_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP025600.1_2174015_2175131_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP025600.1_2175121_2176462_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP025600.1_2176498_2176879_-	NA	NA|621aa|down_7|NZ_CP025600.1_2177035_2178898_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP025600.1_2178905_2179385_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP025600.1_2179621_2180395_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002886225.1_ASM288622v1	NZ_CP025600	Mycobacterium tuberculosis strain GG-77-11 chromosome, complete genome	10	2168763-2168982	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NZ_CP025600.1_2159869_2160277_-,NA|127aa|down_5|NZ_CP025600.1_2176498_2176879_-	NA|741aa|up_9|NZ_CP025600.1_2153837_2156060_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_CP025600.1_2156097_2156541_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_CP025600.1_2156654_2157248_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_CP025600.1_2157330_2157936_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_CP025600.1_2158035_2159040_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_CP025600.1_2159139_2159892_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_CP025600.1_2159869_2160277_-	NA	NA|368aa|up_2|NZ_CP025600.1_2160411_2161515_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_CP025600.1_2161514_2162711_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1460aa|up_0|NZ_CP025600.1_2162880_2167260_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP025600.1_2171009_2171474_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP025600.1_2171571_2172435_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP025600.1_2172472_2173744_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP025600.1_2174015_2175131_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP025600.1_2175121_2176462_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP025600.1_2176498_2176879_-	NA	NA|621aa|down_6|NZ_CP025600.1_2177035_2178898_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP025600.1_2178905_2179385_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP025600.1_2179621_2180395_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP025600.1_2180398_2181166_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002886225.1_ASM288622v1	NZ_CP025600	Mycobacterium tuberculosis strain GG-77-11 chromosome, complete genome	11	3119165-3120519	3,7,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-B,Type III-A,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-D,TypeIII-B,TypeIII-A,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_7|NZ_CP025600.1_3112444_3112699_-,NA|135aa|up_6|NZ_CP025600.1_3112846_3113251_+,NA|64aa|up_5|NZ_CP025600.1_3113247_3113439_+,NA|86aa|up_4|NZ_CP025600.1_3115025_3115283_+,NA|104aa|up_3|NZ_CP025600.1_3115387_3115699_+,NA|203aa|up_2|NZ_CP025600.1_3116118_3116727_+,NA	NA|348aa|up_9|NZ_CP025600.1_3110759_3111803_-	COG5586, COG5586, Uncharacterized conserved protein [Function unknown]	NA|92aa|up_8|NZ_CP025600.1_3111993_3112269_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_7|NZ_CP025600.1_3112444_3112699_-	NA	NA|135aa|up_6|NZ_CP025600.1_3112846_3113251_+	NA	NA|64aa|up_5|NZ_CP025600.1_3113247_3113439_+	NA	NA|86aa|up_4|NZ_CP025600.1_3115025_3115283_+	NA	NA|104aa|up_3|NZ_CP025600.1_3115387_3115699_+	NA	NA|203aa|up_2|NZ_CP025600.1_3116118_3116727_+	NA	NA|470aa|up_1|NZ_CP025600.1_3116797_3118207_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP025600.1_3118203_3119016_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP025600.1_3120545_3121807_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP025600.1_3123610_3123952_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP025600.1_3123952_3124969_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|416aa|down_3|NZ_CP025600.1_3124981_3126229_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP025600.1_3126225_3127353_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP025600.1_3127349_3128258_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP025600.1_3128238_3128949_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP025600.1_3128958_3129333_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP025600.1_3129329_3131768_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|263aa|down_9|NZ_CP025600.1_3131764_3132553_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002886225.1_ASM288622v1	NZ_CP025600	Mycobacterium tuberculosis strain GG-77-11 chromosome, complete genome	12	3121842-3123562	8,4,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-B,Type III-A,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-D,TypeIII-B,TypeIII-A,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP025600.1_3112444_3112699_-,NA|135aa|up_7|NZ_CP025600.1_3112846_3113251_+,NA|64aa|up_6|NZ_CP025600.1_3113247_3113439_+,NA|86aa|up_5|NZ_CP025600.1_3115025_3115283_+,NA|104aa|up_4|NZ_CP025600.1_3115387_3115699_+,NA|203aa|up_3|NZ_CP025600.1_3116118_3116727_+,NA	NA|92aa|up_9|NZ_CP025600.1_3111993_3112269_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP025600.1_3112444_3112699_-	NA	NA|135aa|up_7|NZ_CP025600.1_3112846_3113251_+	NA	NA|64aa|up_6|NZ_CP025600.1_3113247_3113439_+	NA	NA|86aa|up_5|NZ_CP025600.1_3115025_3115283_+	NA	NA|104aa|up_4|NZ_CP025600.1_3115387_3115699_+	NA	NA|203aa|up_3|NZ_CP025600.1_3116118_3116727_+	NA	NA|470aa|up_2|NZ_CP025600.1_3116797_3118207_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP025600.1_3118203_3119016_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP025600.1_3120545_3121807_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP025600.1_3123610_3123952_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP025600.1_3123952_3124969_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|416aa|down_2|NZ_CP025600.1_3124981_3126229_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP025600.1_3126225_3127353_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP025600.1_3127349_3128258_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP025600.1_3128238_3128949_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP025600.1_3128958_3129333_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP025600.1_3129329_3131768_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|263aa|down_8|NZ_CP025600.1_3131764_3132553_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP025600.1_3132886_3133432_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002886225.1_ASM288622v1	NZ_CP025600	Mycobacterium tuberculosis strain GG-77-11 chromosome, complete genome	13	3740680-3741221	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP025600.1_3755313_3755601_-	NA|147aa|up_9|NZ_CP025600.1_3721251_3721692_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_8|NZ_CP025600.1_3721725_3722595_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_7|NZ_CP025600.1_3722615_3723626_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|215aa|up_6|NZ_CP025600.1_3723898_3724543_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_5|NZ_CP025600.1_3724609_3725839_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_4|NZ_CP025600.1_3726121_3727471_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_3|NZ_CP025600.1_3727482_3728622_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_2|NZ_CP025600.1_3728618_3729350_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_1|NZ_CP025600.1_3729358_3736930_-	pfam00823, PPE, PPE family	NA|339aa|up_0|NZ_CP025600.1_3736978_3737995_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|86aa|down_0|NZ_CP025600.1_3743183_3743441_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP025600.1_3743696_3753170_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP025600.1_3753795_3754242_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP025600.1_3754278_3755019_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP025600.1_3755313_3755601_-	NA	NA|3717aa|down_5|NZ_CP025600.1_3755937_3767088_-	pfam00823, PPE, PPE family	NA|130aa|down_6|NZ_CP025600.1_3769096_3769486_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_7|NZ_CP025600.1_3769499_3769793_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_8|NZ_CP025600.1_3769789_3770635_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_9|NZ_CP025600.1_3770758_3771034_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]
GCF_002886225.1_ASM288622v1	NZ_CP025600	Mycobacterium tuberculosis strain GG-77-11 chromosome, complete genome	14	3762469-3762595	5	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTTGCCGATGCCGGTGTTGAAA	22	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|96aa|up_0|NZ_CP025600.1_3755313_3755601_-,NA	NA|380aa|up_9|NZ_CP025600.1_3727482_3728622_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_8|NZ_CP025600.1_3728618_3729350_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_7|NZ_CP025600.1_3729358_3736930_-	pfam00823, PPE, PPE family	NA|339aa|up_6|NZ_CP025600.1_3736978_3737995_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|1536aa|up_5|NZ_CP025600.1_3738152_3742760_-	pfam00934, PE, PE family	NA|86aa|up_4|NZ_CP025600.1_3743183_3743441_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|up_3|NZ_CP025600.1_3743696_3753170_-	pfam00823, PPE, PPE family	NA|149aa|up_2|NZ_CP025600.1_3753795_3754242_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|up_1|NZ_CP025600.1_3754278_3755019_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|up_0|NZ_CP025600.1_3755313_3755601_-	NA	NA|130aa|down_0|NZ_CP025600.1_3769096_3769486_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_1|NZ_CP025600.1_3769499_3769793_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_2|NZ_CP025600.1_3769789_3770635_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_3|NZ_CP025600.1_3770758_3771034_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_4|NZ_CP025600.1_3771030_3771288_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|397aa|down_5|NZ_CP025600.1_3771329_3772520_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|123aa|down_6|NZ_CP025600.1_3772636_3773005_+	pfam00498, FHA, FHA domain	NA|184aa|down_7|NZ_CP025600.1_3773001_3773553_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|194aa|down_8|NZ_CP025600.1_3773559_3774141_-	COG2229, COG2229, Predicted GTPase [General function prediction only]	NA|123aa|down_9|NZ_CP025600.1_3774121_3774490_-	pfam05331, DUF742, Protein of unknown function (DUF742)
GCF_002886225.1_ASM288622v1	NZ_CP025600	Mycobacterium tuberculosis strain GG-77-11 chromosome, complete genome	15	3935825-3936223	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGCAACGGCGGAGCCGGCGG	23	8	84	3935848-3935884|3935908-3935929|3935953-3935974|3935953-3935974|3935953-3935974|3935998-3936025|3936049-3936070|3936094-3936118|3936094-3936118|3936094-3936118|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936142-3936160|3936184-3936199|3936184-3936199	NZ_CP025600.1_3935233-3935269|NZ_CP025600.1_3935293-3935314|NZ_CP025600.1_3934693-3934714|NZ_CP025600.1_3935338-3935359|NZ_CP025600.1_1092172-1092193|NZ_CP025600.1_3935383-3935410|NZ_CP025600.1_3936223-3936244|NZ_CP025600.1_3934816-3934840|NZ_CP025600.1_3934864-3934888|NZ_CP025600.1_3935479-3935503|NZ_CP025600.1_3934912-3934930|NZ_CP025600.1_3935527-3935545|NZ_CP025600.1_673771-673753|NZ_CP025600.1_674452-674434|NZ_CP025600.1_1216918-1216936|NZ_CP025600.1_1633465-1633447|NZ_CP025600.1_1636860-1636842|NZ_CP025600.1_2922337-2922355|NZ_CP025600.1_3931669-3931687|NZ_CP025600.1_3946448-3946466|NZ_CP025600.1_150506-150524|NZ_CP025600.1_335680-335662|NZ_CP025600.1_337419-337401|NZ_CP025600.1_362462-362480|NZ_CP025600.1_400983-400965|NZ_CP025600.1_455688-455706|NZ_CP025600.1_607302-607284|NZ_CP025600.1_672670-672652|NZ_CP025600.1_675049-675031|NZ_CP025600.1_839763-839781|NZ_CP025600.1_925602-925620|NZ_CP025600.1_928349-928331|NZ_CP025600.1_929213-929195|NZ_CP025600.1_1189105-1189087|NZ_CP025600.1_1217686-1217704|NZ_CP025600.1_1218100-1218118|NZ_CP025600.1_1218373-1218391|NZ_CP025600.1_1218793-1218811|NZ_CP025600.1_1573239-1573221|NZ_CP025600.1_1631740-1631722|NZ_CP025600.1_1633381-1633363|NZ_CP025600.1_1636776-1636758|NZ_CP025600.1_1656102-1656084|NZ_CP025600.1_2001716-2001734|NZ_CP025600.1_2045155-2045137|NZ_CP025600.1_2045764-2045746|NZ_CP025600.1_2062112-2062094|NZ_CP025600.1_2062184-2062166|NZ_CP025600.1_2374040-2374022|NZ_CP025600.1_2423295-2423277|NZ_CP025600.1_2424306-2424288|NZ_CP025600.1_2651932-2651950|NZ_CP025600.1_2803080-2803062|NZ_CP025600.1_3163057-3163075|NZ_CP025600.1_3163480-3163498|NZ_CP025600.1_3802130-3802148|NZ_CP025600.1_3802205-3802223|NZ_CP025600.1_3803213-3803231|NZ_CP025600.1_3803360-3803378|NZ_CP025600.1_3803414-3803432|NZ_CP025600.1_3927533-3927551|NZ_CP025600.1_3927944-3927962|NZ_CP025600.1_3929348-3929366|NZ_CP025600.1_3930416-3930434|NZ_CP025600.1_3930443-3930461|NZ_CP025600.1_3931513-3931531|NZ_CP025600.1_3933358-3933376|NZ_CP025600.1_3933889-3933907|NZ_CP025600.1_3934492-3934510|NZ_CP025600.1_3935134-3935152|NZ_CP025600.1_3935461-3935479|NZ_CP025600.1_3935749-3935767|NZ_CP025600.1_3940857-3940875|NZ_CP025600.1_3944880-3944898|NZ_CP025600.1_3946292-3946310|NZ_CP025600.1_3948440-3948458|NZ_CP025600.1_3948746-3948764|NZ_CP025600.1_3949040-3949058|NZ_CP025600.1_3949331-3949349|NZ_CP025600.1_3949349-3949367|NZ_CP025600.1_3949640-3949658|NZ_CP025600.1_4369568-4369586|NZ_CP025600.1_3934954-3934969|NZ_CP025600.1_3935569-3935584	NA	8	8	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_9|NZ_CP025600.1_3953407_3954247_+	NA|351aa|up_9|NZ_CP025600.1_3916932_3917985_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|401aa|up_8|NZ_CP025600.1_3917984_3919187_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|281aa|up_7|NZ_CP025600.1_3919206_3920049_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|255aa|up_6|NZ_CP025600.1_3920083_3920848_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_5|NZ_CP025600.1_3921073_3922027_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_4|NZ_CP025600.1_3922051_3922243_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_3|NZ_CP025600.1_3922457_3923660_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_2|NZ_CP025600.1_3923684_3924806_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_1|NZ_CP025600.1_3924876_3926385_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1382aa|up_0|NZ_CP025600.1_3926555_3930701_+	pfam00934, PE, PE family	NA|516aa|down_0|NZ_CP025600.1_3936845_3938393_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|down_1|NZ_CP025600.1_3938389_3939226_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|129aa|down_2|NZ_CP025600.1_3941725_3942112_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|636aa|down_3|NZ_CP025600.1_3942145_3944053_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|297aa|down_4|NZ_CP025600.1_3944049_3944940_+	PHA03169, PHA03169, hypothetical protein; Provisional	NA|219aa|down_5|NZ_CP025600.1_3945068_3945725_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|1490aa|down_6|NZ_CP025600.1_3945770_3950240_+	pfam00934, PE, PE family	NA|549aa|down_7|NZ_CP025600.1_3950800_3952447_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_8|NZ_CP025600.1_3952520_3953312_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_9|NZ_CP025600.1_3953407_3954247_+	NA
GCF_002886225.1_ASM288622v1	NZ_CP025600	Mycobacterium tuberculosis strain GG-77-11 chromosome, complete genome	16	3936281-3936645	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGCAACGGCGGAGCCGGCGG	23	3	3	3936511-3936532|3936556-3936577|3936601-3936622	NZ_CP025600.1_1802720-1802699|NZ_CP025600.1_3741897-3741876|NZ_CP025600.1_3932335-3932356	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_9|NZ_CP025600.1_3953407_3954247_+	NA|351aa|up_9|NZ_CP025600.1_3916932_3917985_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|401aa|up_8|NZ_CP025600.1_3917984_3919187_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|281aa|up_7|NZ_CP025600.1_3919206_3920049_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|255aa|up_6|NZ_CP025600.1_3920083_3920848_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_5|NZ_CP025600.1_3921073_3922027_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_4|NZ_CP025600.1_3922051_3922243_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_3|NZ_CP025600.1_3922457_3923660_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_2|NZ_CP025600.1_3923684_3924806_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_1|NZ_CP025600.1_3924876_3926385_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1382aa|up_0|NZ_CP025600.1_3926555_3930701_+	pfam00934, PE, PE family	NA|516aa|down_0|NZ_CP025600.1_3936845_3938393_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|down_1|NZ_CP025600.1_3938389_3939226_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|129aa|down_2|NZ_CP025600.1_3941725_3942112_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|636aa|down_3|NZ_CP025600.1_3942145_3944053_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|297aa|down_4|NZ_CP025600.1_3944049_3944940_+	PHA03169, PHA03169, hypothetical protein; Provisional	NA|219aa|down_5|NZ_CP025600.1_3945068_3945725_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|1490aa|down_6|NZ_CP025600.1_3945770_3950240_+	pfam00934, PE, PE family	NA|549aa|down_7|NZ_CP025600.1_3950800_3952447_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_8|NZ_CP025600.1_3952520_3953312_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_9|NZ_CP025600.1_3953407_3954247_+	NA
GCF_002886225.1_ASM288622v1	NZ_CP025600	Mycobacterium tuberculosis strain GG-77-11 chromosome, complete genome	17	4110646-4110734	11	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NZ_CP025600.1_4101232_4102003_-,NA|233aa|up_0|NZ_CP025600.1_4109750_4110449_-,NA|126aa|down_6|NZ_CP025600.1_4115969_4116347_+	NA|388aa|up_9|NZ_CP025600.1_4096903_4098067_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NZ_CP025600.1_4098063_4099116_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NZ_CP025600.1_4099614_4100478_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NZ_CP025600.1_4101232_4102003_-	NA	NA|549aa|up_5|NZ_CP025600.1_4101999_4103646_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NZ_CP025600.1_4103642_4104506_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NZ_CP025600.1_4104498_4105425_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NZ_CP025600.1_4105426_4107052_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NZ_CP025600.1_4107759_4109715_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP025600.1_4109750_4110449_-	NA	NA|173aa|down_0|NZ_CP025600.1_4110794_4111313_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP025600.1_4111313_4112297_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP025600.1_4112289_4113483_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP025600.1_4113488_4114310_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|216aa|down_4|NZ_CP025600.1_4114441_4115089_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP025600.1_4115124_4115862_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP025600.1_4115969_4116347_+	NA	NA|225aa|down_7|NZ_CP025600.1_4116445_4117120_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP025600.1_4117225_4118020_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP025600.1_4118026_4118482_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
