assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002886405.1_ASM288640v1	NZ_CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	1	333594-334392	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP025604.1_333109_333292_-,NA	NA|398aa|up_9|NZ_CP025604.1_323287_324481_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP025604.1_324516_326199_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP025604.1_326215_328411_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP025604.1_328524_329658_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP025604.1_329654_330275_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP025604.1_330371_330953_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP025604.1_330882_331608_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP025604.1_331697_332618_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP025604.1_332657_333086_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP025604.1_333109_333292_-	NA	NA|827aa|down_0|NZ_CP025604.1_336491_338972_-	pfam00934, PE, PE family	NA|537aa|down_1|NZ_CP025604.1_339262_340873_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP025604.1_340896_341805_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP025604.1_342028_343924_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP025604.1_343920_345537_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP025604.1_345533_349526_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP025604.1_349522_349831_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP025604.1_349833_351375_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP025604.1_351423_351717_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP025604.1_351746_352037_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002886405.1_ASM288640v1	NZ_CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	2	366362-367060	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366650-366691|366725-366757	NZ_CP025604.1_374681-374722|NZ_CP025604.1_373496-373528	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP025604.1_363374_363677_+,NA|161aa|down_1|NZ_CP025604.1_376470_376953_-,NA|410aa|down_5|NZ_CP025604.1_379069_380299_+	NA|262aa|up_9|NZ_CP025604.1_358069_358855_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP025604.1_358843_359647_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP025604.1_359656_361054_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP025604.1_361232_363008_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP025604.1_363150_363378_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP025604.1_363374_363677_+	NA	NA|74aa|up_3|NZ_CP025604.1_363724_363946_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP025604.1_363942_364368_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP025604.1_364503_365136_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP025604.1_365132_366041_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP025604.1_375811_376483_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP025604.1_376470_376953_-	NA	NA|239aa|down_2|NZ_CP025604.1_377010_377727_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP025604.1_377828_378485_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP025604.1_378554_379046_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP025604.1_379069_380299_+	NA	NA|621aa|down_6|NZ_CP025604.1_380453_382316_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP025604.1_382387_382774_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP025604.1_382776_383439_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP025604.1_383499_384384_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002886405.1_ASM288640v1	NZ_CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	3	691900-691976	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP025604.1_677584_677800_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP025604.1_677796_678204_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP025604.1_678263_678950_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP025604.1_679103_681737_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP025604.1_681759_684147_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP025604.1_684284_685007_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP025604.1_685003_685801_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP025604.1_685802_686690_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP025604.1_686695_687910_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP025604.1_688933_690379_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP025604.1_693111_694662_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP025604.1_694713_695106_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP025604.1_695102_695360_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP025604.1_695542_696778_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP025604.1_697028_697442_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP025604.1_697438_697675_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP025604.1_697778_698285_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP025604.1_698398_698869_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP025604.1_698912_699674_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP025604.1_699730_700042_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002886405.1_ASM288640v1	NZ_CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	4	926497-927444	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927280-927315|927280-927315|927280-927315	NZ_CP025604.1_675003-674968|NZ_CP025604.1_1213639-1213674|NZ_CP025604.1_2423684-2423649	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP025604.1_931445_931997_-,NA|81aa|down_8|NZ_CP025604.1_937460_937703_+	NA|685aa|up_9|NZ_CP025604.1_914133_916188_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP025604.1_916353_917523_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP025604.1_917610_918627_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP025604.1_918788_919430_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP025604.1_919510_920566_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP025604.1_920617_921010_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP025604.1_921067_921490_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP025604.1_921451_921742_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP025604.1_921846_922752_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP025604.1_922770_923586_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|880aa|down_0|NZ_CP025604.1_927713_930353_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP025604.1_930820_931465_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP025604.1_931445_931997_-	NA	NA|218aa|down_3|NZ_CP025604.1_932146_932800_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP025604.1_932870_933899_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP025604.1_934587_935358_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP025604.1_935444_936257_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP025604.1_936324_937185_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP025604.1_937460_937703_+	NA	NA|431aa|down_9|NZ_CP025604.1_937979_939272_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002886405.1_ASM288640v1	NZ_CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	5	1191206-1191314	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP025604.1_1180573_1182205_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP025604.1_1182280_1183345_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP025604.1_1183397_1183871_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP025604.1_1183904_1184768_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP025604.1_1184772_1185630_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP025604.1_1185630_1186713_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP025604.1_1186793_1187213_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP025604.1_1187324_1187891_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP025604.1_1187887_1188283_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP025604.1_1188310_1190314_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP025604.1_1192399_1194163_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP025604.1_1194159_1194933_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP025604.1_1194944_1195982_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP025604.1_1196168_1197005_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP025604.1_1197120_1197972_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP025604.1_1198045_1199263_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP025604.1_1199315_1200260_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP025604.1_1200482_1201550_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP025604.1_1201606_1203001_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP025604.1_1203202_1203925_+	pfam06271, RDD, RDD family
GCF_002886405.1_ASM288640v1	NZ_CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	6	1211840-1212696	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	3	67	1212223-1212244|1212223-1212244|1212406-1212427|1212406-1212427|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541|1212523-1212541	NZ_CP025604.1_362564-362585|NZ_CP025604.1_2960465-2960444|NZ_CP025604.1_837308-837329|NZ_CP025604.1_1217534-1217555|NZ_CP025604.1_674667-674649|NZ_CP025604.1_1213366-1213384|NZ_CP025604.1_1217507-1217525|NZ_CP025604.1_1217579-1217597|NZ_CP025604.1_1630583-1630565|NZ_CP025604.1_1633409-1633391|NZ_CP025604.1_1990717-1990699|NZ_CP025604.1_2061450-2061432|NZ_CP025604.1_2061897-2061879|NZ_CP025604.1_2802014-2801996|NZ_CP025604.1_2805542-2805524|NZ_CP025604.1_150128-150146|NZ_CP025604.1_335151-335133|NZ_CP025604.1_335604-335586|NZ_CP025604.1_335655-335637|NZ_CP025604.1_335664-335646|NZ_CP025604.1_337902-337884|NZ_CP025604.1_338031-338013|NZ_CP025604.1_338298-338280|NZ_CP025604.1_338327-338345|NZ_CP025604.1_338421-338403|NZ_CP025604.1_362952-362934|NZ_CP025604.1_443326-443308|NZ_CP025604.1_546669-546651|NZ_CP025604.1_623858-623876|NZ_CP025604.1_624080-624098|NZ_CP025604.1_673833-673815|NZ_CP025604.1_840092-840110|NZ_CP025604.1_1090869-1090887|NZ_CP025604.1_1091517-1091535|NZ_CP025604.1_1095576-1095558|NZ_CP025604.1_1212895-1212913|NZ_CP025604.1_1213285-1213303|NZ_CP025604.1_1217927-1217945|NZ_CP025604.1_1489105-1489087|NZ_CP025604.1_1619000-1618982|NZ_CP025604.1_1635922-1635904|NZ_CP025604.1_1635931-1635913|NZ_CP025604.1_1864209-1864191|NZ_CP025604.1_1864737-1864719|NZ_CP025604.1_1989991-1989973|NZ_CP025604.1_2001353-2001371|NZ_CP025604.1_2303418-2303400|NZ_CP025604.1_2356861-2356843|NZ_CP025604.1_2419510-2419528|NZ_CP025604.1_2423597-2423579|NZ_CP025604.1_2569089-2569071|NZ_CP025604.1_2693384-2693402|NZ_CP025604.1_2795329-2795311|NZ_CP025604.1_2795911-2795893|NZ_CP025604.1_3054492-3054510|NZ_CP025604.1_3054591-3054609|NZ_CP025604.1_3705403-3705421|NZ_CP025604.1_3737380-3737362|NZ_CP025604.1_3802267-3802285|NZ_CP025604.1_3802450-3802468|NZ_CP025604.1_3802618-3802636|NZ_CP025604.1_3930416-3930434|NZ_CP025604.1_3932146-3932164|NZ_CP025604.1_3940653-3940671|NZ_CP025604.1_4031612-4031594|NZ_CP025604.1_4094129-4094147|NZ_CP025604.1_4094219-4094237	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP025604.1_1207272_1207539_+,NA|61aa|down_3|NZ_CP025604.1_1215114_1215297_+,NA|35aa|down_4|NZ_CP025604.1_1215406_1215511_+	NA|465aa|up_9|NZ_CP025604.1_1201606_1203001_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP025604.1_1203202_1203925_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP025604.1_1203956_1205123_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP025604.1_1205193_1205688_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP025604.1_1205873_1206308_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP025604.1_1206409_1207276_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP025604.1_1207272_1207539_+	NA	NA|674aa|up_2|NZ_CP025604.1_1207525_1209547_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP025604.1_1209645_1210374_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP025604.1_1210484_1211273_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP025604.1_1213929_1214250_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP025604.1_1214402_1214837_+	pfam00934, PE, PE family	NA|55aa|down_2|NZ_CP025604.1_1214938_1215103_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP025604.1_1215114_1215297_+	NA	NA|35aa|down_4|NZ_CP025604.1_1215406_1215511_+	NA	NA|152aa|down_5|NZ_CP025604.1_1215488_1215944_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP025604.1_1216358_1218920_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP025604.1_1219137_1220076_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP025604.1_1220463_1221744_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP025604.1_1221848_1222676_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002886405.1_ASM288640v1	NZ_CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	7	1572080-1573152	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP025604.1_1563843_1564161_+,NA	NA|103aa|up_9|NZ_CP025604.1_1561358_1561667_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP025604.1_1561663_1563283_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP025604.1_1563843_1564161_+	NA	NA|209aa|up_6|NZ_CP025604.1_1564295_1564922_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP025604.1_1564987_1565320_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP025604.1_1565335_1566592_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP025604.1_1566719_1567931_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP025604.1_1568003_1569482_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP025604.1_1569478_1570864_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP025604.1_1570941_1571976_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP025604.1_1574006_1574408_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP025604.1_1574404_1574662_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP025604.1_1574744_1575704_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP025604.1_1575728_1576691_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP025604.1_1576824_1577427_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP025604.1_1577507_1579475_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP025604.1_1579492_1580317_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP025604.1_1580485_1580968_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP025604.1_1581039_1581864_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP025604.1_1582060_1582999_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002886405.1_ASM288640v1	NZ_CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	8	1636500-1636726	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGCGCCGTTGGCGCCGTTGCCGCCGGCGCCGCCGTTGCCGCCG	47	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_8|NZ_CP025604.1_1623008_1623122_-,NA|137aa|up_7|NZ_CP025604.1_1623171_1623582_-,NA|288aa|down_2|NZ_CP025604.1_1640564_1641428_+	NA|162aa|up_9|NZ_CP025604.1_1622091_1622577_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_8|NZ_CP025604.1_1623008_1623122_-	NA	NA|137aa|up_7|NZ_CP025604.1_1623171_1623582_-	NA	NA|248aa|up_6|NZ_CP025604.1_1623598_1624342_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_5|NZ_CP025604.1_1624338_1625250_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_4|NZ_CP025604.1_1625302_1626847_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_3|NZ_CP025604.1_1626843_1627965_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_2|NZ_CP025604.1_1627981_1630084_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1330aa|up_1|NZ_CP025604.1_1630522_1634512_-	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP025604.1_1634913_1635840_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP025604.1_1638265_1639531_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP025604.1_1639558_1640545_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP025604.1_1640564_1641428_+	NA	NA|311aa|down_3|NZ_CP025604.1_1641377_1642310_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP025604.1_1642421_1643207_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP025604.1_1643203_1644145_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP025604.1_1644247_1646023_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP025604.1_1646070_1646877_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP025604.1_1646873_1649414_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP025604.1_1649410_1650604_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_002886405.1_ASM288640v1	NZ_CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	9	2087959-2088185	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCACCGTCGCCGCCGTCGCCGATCAAC	27	0	0	NA	NA	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP025604.1_2087554_2087818_-,NA	NA|248aa|up_9|NZ_CP025604.1_2072982_2073726_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|165aa|up_8|NZ_CP025604.1_2073844_2074339_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_7|NZ_CP025604.1_2074745_2075423_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_6|NZ_CP025604.1_2075781_2078607_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_5|NZ_CP025604.1_2078833_2079694_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_4|NZ_CP025604.1_2079734_2080601_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|678aa|up_3|NZ_CP025604.1_2082508_2084542_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP025604.1_2084661_2086887_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP025604.1_2087162_2087558_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP025604.1_2087554_2087818_-	NA	NA|346aa|down_0|NZ_CP025604.1_2089587_2090625_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP025604.1_2090624_2091992_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP025604.1_2092165_2093602_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP025604.1_2093637_2095089_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP025604.1_2095118_2096069_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP025604.1_2096083_2096500_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP025604.1_2096777_2097200_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP025604.1_2097248_2097551_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP025604.1_2097547_2097862_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP025604.1_2097861_2099595_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002886405.1_ASM288640v1	NZ_CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	10	2088196-2088779	3,7	CRT,CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC,CCACCGTCGCCGCCGTCGCCGATCAAC	21,27	2	3	2088277-2088294|2088277-2088294|2088367-2088384	NZ_CP025604.1_400977-400960|NZ_CP025604.1_607313-607296|NZ_CP025604.1_3450093-3450076	NA:NA	5,6	6	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP025604.1_2087554_2087818_-,NA	NA|248aa|up_9|NZ_CP025604.1_2072982_2073726_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|165aa|up_8|NZ_CP025604.1_2073844_2074339_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_7|NZ_CP025604.1_2074745_2075423_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_6|NZ_CP025604.1_2075781_2078607_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_5|NZ_CP025604.1_2078833_2079694_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_4|NZ_CP025604.1_2079734_2080601_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|678aa|up_3|NZ_CP025604.1_2082508_2084542_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP025604.1_2084661_2086887_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP025604.1_2087162_2087558_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP025604.1_2087554_2087818_-	NA	NA|346aa|down_0|NZ_CP025604.1_2089587_2090625_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP025604.1_2090624_2091992_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP025604.1_2092165_2093602_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP025604.1_2093637_2095089_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP025604.1_2095118_2096069_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP025604.1_2096083_2096500_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP025604.1_2096777_2097200_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP025604.1_2097248_2097551_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP025604.1_2097547_2097862_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP025604.1_2097861_2099595_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002886405.1_ASM288640v1	NZ_CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	11	2088851-2089090	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCACCGTCGCCGCCGTCGCCGATCAAC	27	0	0	NA	NA	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP025604.1_2087554_2087818_-,NA	NA|248aa|up_9|NZ_CP025604.1_2072982_2073726_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|165aa|up_8|NZ_CP025604.1_2073844_2074339_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_7|NZ_CP025604.1_2074745_2075423_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_6|NZ_CP025604.1_2075781_2078607_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_5|NZ_CP025604.1_2078833_2079694_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_4|NZ_CP025604.1_2079734_2080601_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|678aa|up_3|NZ_CP025604.1_2082508_2084542_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP025604.1_2084661_2086887_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP025604.1_2087162_2087558_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP025604.1_2087554_2087818_-	NA	NA|346aa|down_0|NZ_CP025604.1_2089587_2090625_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP025604.1_2090624_2091992_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP025604.1_2092165_2093602_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP025604.1_2093637_2095089_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP025604.1_2095118_2096069_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP025604.1_2096083_2096500_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP025604.1_2096777_2097200_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP025604.1_2097248_2097551_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP025604.1_2097547_2097862_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP025604.1_2097861_2099595_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002886405.1_ASM288640v1	NZ_CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	12	2168742-2168961	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP025604.1_2159847_2160255_-,NA|127aa|down_5|NZ_CP025604.1_2176477_2176858_-	NA|216aa|up_9|NZ_CP025604.1_2153161_2153809_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP025604.1_2153815_2156038_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP025604.1_2156075_2156519_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP025604.1_2156632_2157226_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP025604.1_2157308_2157914_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP025604.1_2158013_2159018_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP025604.1_2159117_2159870_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP025604.1_2159847_2160255_-	NA	NA|767aa|up_1|NZ_CP025604.1_2160389_2162690_+	PLN02892, PLN02892, isocitrate lyase	NA|1460aa|up_0|NZ_CP025604.1_2162859_2167239_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP025604.1_2170988_2171453_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP025604.1_2171550_2172414_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP025604.1_2172451_2173723_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP025604.1_2173994_2175110_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP025604.1_2175100_2176441_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP025604.1_2176477_2176858_-	NA	NA|621aa|down_6|NZ_CP025604.1_2177014_2178877_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP025604.1_2178884_2179364_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP025604.1_2179600_2180374_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|215aa|down_9|NZ_CP025604.1_2181167_2181812_-	TIGR03085, TIGR03085, TIGR03085 family protein
GCF_002886405.1_ASM288640v1	NZ_CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	13	3119080-3120434	2,10,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-B,Type III-C,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP025604.1_3112359_3112614_-,NA|135aa|up_7|NZ_CP025604.1_3112761_3113166_+,NA|64aa|up_6|NZ_CP025604.1_3113162_3113354_+,NA|86aa|up_4|NZ_CP025604.1_3114940_3115198_+,NA|104aa|up_3|NZ_CP025604.1_3115302_3115614_+,NA|203aa|up_2|NZ_CP025604.1_3116033_3116642_+,NA	NA|92aa|up_9|NZ_CP025604.1_3111908_3112184_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP025604.1_3112359_3112614_-	NA	NA|135aa|up_7|NZ_CP025604.1_3112761_3113166_+	NA	NA|64aa|up_6|NZ_CP025604.1_3113162_3113354_+	NA	NA|385aa|up_5|NZ_CP025604.1_3113552_3114707_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP025604.1_3114940_3115198_+	NA	NA|104aa|up_3|NZ_CP025604.1_3115302_3115614_+	NA	NA|203aa|up_2|NZ_CP025604.1_3116033_3116642_+	NA	NA|470aa|up_1|NZ_CP025604.1_3116712_3118122_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP025604.1_3118118_3118931_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP025604.1_3120460_3121722_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP025604.1_3123521_3123863_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP025604.1_3123863_3124880_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP025604.1_3124892_3126041_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP025604.1_3126136_3127264_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP025604.1_3127260_3128169_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP025604.1_3128149_3128860_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP025604.1_3128869_3129244_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP025604.1_3129240_3131679_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP025604.1_3131675_3132398_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002886405.1_ASM288640v1	NZ_CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	14	3121757-3123473	11,5,3,4	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-B,Type III-C,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGA,AAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,32,38	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A:II-B,III-A	23,23,21,21	23	TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP025604.1_3112359_3112614_-,NA|135aa|up_8|NZ_CP025604.1_3112761_3113166_+,NA|64aa|up_7|NZ_CP025604.1_3113162_3113354_+,NA|86aa|up_5|NZ_CP025604.1_3114940_3115198_+,NA|104aa|up_4|NZ_CP025604.1_3115302_3115614_+,NA|203aa|up_3|NZ_CP025604.1_3116033_3116642_+,NA	NA|85aa|up_9|NZ_CP025604.1_3112359_3112614_-	NA	NA|135aa|up_8|NZ_CP025604.1_3112761_3113166_+	NA	NA|64aa|up_7|NZ_CP025604.1_3113162_3113354_+	NA	NA|385aa|up_6|NZ_CP025604.1_3113552_3114707_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP025604.1_3114940_3115198_+	NA	NA|104aa|up_4|NZ_CP025604.1_3115302_3115614_+	NA	NA|203aa|up_3|NZ_CP025604.1_3116033_3116642_+	NA	NA|470aa|up_2|NZ_CP025604.1_3116712_3118122_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP025604.1_3118118_3118931_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP025604.1_3120460_3121722_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP025604.1_3123521_3123863_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP025604.1_3123863_3124880_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP025604.1_3124892_3126041_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP025604.1_3126136_3127264_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP025604.1_3127260_3128169_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP025604.1_3128149_3128860_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP025604.1_3128869_3129244_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP025604.1_3129240_3131679_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP025604.1_3131675_3132398_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP025604.1_3132797_3133343_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002886405.1_ASM288640v1	NZ_CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	15	3737769-3740448	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	NGCCGCCGTTGCCGCCGN	18	2	9	3738012-3738029|3738012-3738029|3738012-3738029|3738012-3738029|3739351-3739368|3739351-3739368|3739351-3739368|3739351-3739368|3739351-3739368	NZ_CP025604.1_336836-336853|NZ_CP025604.1_1863746-1863763|NZ_CP025604.1_2356677-2356694|NZ_CP025604.1_3055036-3055019|NZ_CP025604.1_4374665-4374682|NZ_CP025604.1_567214-567231|NZ_CP025604.1_2653616-2653633|NZ_CP025604.1_2922610-2922593|NZ_CP025604.1_4259341-4259324	NA	39	39	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP025604.1_3755234_3755522_-,NA|87aa|down_9|NZ_CP025604.1_3768642_3768903_-	NA|282aa|up_9|NZ_CP025604.1_3719825_3720671_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP025604.1_3721145_3721586_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP025604.1_3721619_3722489_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP025604.1_3722509_3723520_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP025604.1_3723804_3724437_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP025604.1_3724503_3725733_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP025604.1_3726015_3727365_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP025604.1_3727376_3728516_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP025604.1_3728512_3729244_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP025604.1_3729252_3736824_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP025604.1_3743104_3743362_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP025604.1_3743617_3753091_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP025604.1_3753716_3754163_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP025604.1_3754199_3754940_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP025604.1_3755234_3755522_-	NA	NA|3717aa|down_5|NZ_CP025604.1_3755858_3767009_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP025604.1_3767252_3768047_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP025604.1_3768128_3768500_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP025604.1_3768397_3768616_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP025604.1_3768642_3768903_-	NA
GCF_002886405.1_ASM288640v1	NZ_CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	16	3740592-3741361	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGNNNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP025604.1_3755234_3755522_-,NA|87aa|down_9|NZ_CP025604.1_3768642_3768903_-	NA|282aa|up_9|NZ_CP025604.1_3719825_3720671_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP025604.1_3721145_3721586_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP025604.1_3721619_3722489_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP025604.1_3722509_3723520_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP025604.1_3723804_3724437_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP025604.1_3724503_3725733_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP025604.1_3726015_3727365_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP025604.1_3727376_3728516_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP025604.1_3728512_3729244_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP025604.1_3729252_3736824_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP025604.1_3743104_3743362_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP025604.1_3743617_3753091_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP025604.1_3753716_3754163_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP025604.1_3754199_3754940_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP025604.1_3755234_3755522_-	NA	NA|3717aa|down_5|NZ_CP025604.1_3755858_3767009_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP025604.1_3767252_3768047_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP025604.1_3768128_3768500_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP025604.1_3768397_3768616_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP025604.1_3768642_3768903_-	NA
GCF_002886405.1_ASM288640v1	NZ_CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	17	3948251-3948757	8	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CACCGGCGGCACCGGCGGCNCNGGCGGCACCGGCGGCNA	39	4	7	3948290-3948340|3948290-3948340|3948380-3948415|3948380-3948415|3948455-3948487|3948455-3948487|3948668-3948718	NZ_CP025604.1_3948890-3948940|NZ_CP025604.1_3949490-3949540|NZ_CP025604.1_3948980-3949015|NZ_CP025604.1_3949580-3949615|NZ_CP025604.1_3949055-3949087|NZ_CP025604.1_3949655-3949687|NZ_CP025604.1_3949271-3949321	NA	6	6	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP025604.1_3953308_3954148_+	NA|64aa|up_9|NZ_CP025604.1_3921970_3922162_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_8|NZ_CP025604.1_3922376_3923579_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_7|NZ_CP025604.1_3923603_3924725_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_6|NZ_CP025604.1_3924795_3926304_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1379aa|up_5|NZ_CP025604.1_3926474_3930611_+	pfam00934, PE, PE family	NA|1902aa|up_4|NZ_CP025604.1_3930901_3936607_+	pfam00934, PE, PE family	NA|516aa|up_3|NZ_CP025604.1_3936773_3938321_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_2|NZ_CP025604.1_3938317_3939154_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|1776aa|up_1|NZ_CP025604.1_3939513_3944841_+	pfam00934, PE, PE family	NA|219aa|up_0|NZ_CP025604.1_3944969_3945626_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP025604.1_3950701_3952348_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP025604.1_3952421_3953213_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP025604.1_3953308_3954148_+	NA	NA|399aa|down_3|NZ_CP025604.1_3954202_3955399_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP025604.1_3955427_3956138_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP025604.1_3956202_3957246_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP025604.1_3957398_3958310_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP025604.1_3958325_3959390_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP025604.1_3959406_3960591_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP025604.1_3960632_3961664_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_002886405.1_ASM288640v1	NZ_CP025604	Mycobacterium tuberculosis strain GG-129-11 chromosome, complete genome	18	4110564-4110652	12	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP025604.1_4101150_4101921_-,NA|119aa|up_3|NZ_CP025604.1_4107055_4107412_+,NA|52aa|up_2|NZ_CP025604.1_4107511_4107667_+,NA|233aa|up_0|NZ_CP025604.1_4109668_4110367_-,NA|126aa|down_6|NZ_CP025604.1_4115887_4116265_+	NA|288aa|up_9|NZ_CP025604.1_4099532_4100396_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP025604.1_4101150_4101921_-	NA	NA|549aa|up_7|NZ_CP025604.1_4101917_4103564_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP025604.1_4103560_4104424_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP025604.1_4104416_4105343_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP025604.1_4105344_4106970_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP025604.1_4107055_4107412_+	NA	NA|52aa|up_2|NZ_CP025604.1_4107511_4107667_+	NA	NA|652aa|up_1|NZ_CP025604.1_4107677_4109633_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP025604.1_4109668_4110367_-	NA	NA|173aa|down_0|NZ_CP025604.1_4110712_4111231_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP025604.1_4111231_4112215_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP025604.1_4112207_4113401_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP025604.1_4113406_4114228_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP025604.1_4114359_4115043_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP025604.1_4115042_4115780_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP025604.1_4115887_4116265_+	NA	NA|225aa|down_7|NZ_CP025604.1_4116363_4117038_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP025604.1_4117141_4117936_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP025604.1_4117942_4118398_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
