The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025598	Mycobacterium tuberculosis strain GG-37-11 chromosome, complete genome	4411526	2941185	2976559	4411526	tRNA,integrase,capsid,terminase,transposase,protease,head	Tupanvirus(11.11%)	41	2969986:2970013	2980976:2981003
WP_003413486.1|2941185_2943264_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943372_2943600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943596_2944982_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945326_2945827_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945843_2946284_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946430_2947108_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2947092_2947446_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947458_2947884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947880_2948555_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948632_2949454_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949589_2950483_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950485_2951304_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951318_2952500_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952558_2952990_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953503_2954745_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2955054_2955417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955763_2956888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956889_2957429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957568_2958867_+	RtcB family protein	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958905_2959187_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959331_2959817_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959843_2960101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2960101_2962438_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962466_2962709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962709_2963387_+	membrane protein	NA	NA	NA	NA	NA
WP_012054325.1|2963582_2964239_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964401_2964848_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2965022_2965355_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965474_2965834_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965935_2966394_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966529_2966910_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966906_2968403_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968592_2968829_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968901_2969075_+	hypothetical protein	NA	NA	NA	NA	NA
2969986:2970013	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2970119_2970551_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970547_2971546_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971559_2972024_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2972156_2973417_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973791_2975231_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975238_2975772_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_072464513.1|2975932_2976559_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980976:2981003	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP025598	Mycobacterium tuberculosis strain GG-37-11 chromosome, complete genome	4411526	3710452	3796381	4411526	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_102765681.1|3710452_3711713_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711768_3711930_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711951_3713481_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713413_3714352_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714360_3715728_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715796_3717014_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3717109_3718618_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718614_3719766_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719956_3720802_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721276_3721717_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721750_3722620_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722640_3723651_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723935_3724568_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724634_3725864_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3726146_3727496_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727507_3728647_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728643_3729375_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023642420.1|3729383_3736955_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3743208_3743466_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_009938649.1|3743721_3753195_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753820_3754267_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754303_3755044_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755338_3755626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755962_3767113_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767356_3768151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3768232_3768604_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768501_3768720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768746_3769007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3769121_3769511_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769524_3769818_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769814_3770660_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770783_3771059_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3771055_3771313_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_012054356.1|3771354_3772545_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772661_3773030_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3773026_3773578_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773584_3774166_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3774146_3774515_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774492_3774885_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774881_3777512_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777747_3778212_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_009938654.1|3778578_3780354_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780354_3780999_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780997_3781432_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781520_3784760_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784951_3786292_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786333_3787509_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787562_3787667_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787745_3788387_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788387_3788636_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_012054357.1|3788640_3790068_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3790175_3790829_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790867_3792373_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792377_3793268_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793276_3794887_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794831_3795077_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3795119_3796381_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
