The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	27282	70036	4109686	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_005012067.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	77634	136108	4109686	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	164893	225404	4109686	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	233336	286924	4109686	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	390857	448366	4109686	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	590600	651791	4109686	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590600_591551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592026_592917_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592913_593735_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593934_594426_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594444_595518_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595564_596668_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596743_597364_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597384_597894_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597948_598200_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598263_599397_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599404_599791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599787_602307_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602735_603074_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603070_603577_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603638_604439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604549_605491_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605584_607120_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608799_610650_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610653_611487_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611486_612428_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612679_613651_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613792_616081_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616387_617296_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617350_618316_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618390_620052_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620123_620834_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620800_620965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620982_621933_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622631_623015_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623072_623675_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623692_624094_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624209_625121_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625117_625699_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626493_627228_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627268_628318_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628465_629044_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629430_630408_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630501_634896_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635096_635945_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636103_636916_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636971_637922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638020_638821_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638882_639266_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639277_640630_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640917_641247_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641249_641999_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642181_643102_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|643148_643361_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643383_643806_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643822_644923_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645019_646537_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646612_647452_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647473_648346_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648436_649531_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649824_650775_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650849_651791_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	657115	703306	4109686	tRNA,transposase,terminase,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657115_658141_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658181_658421_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658490_660080_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660079_660628_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660708_661281_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661299_662211_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662284_663253_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663375_664449_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664453_666274_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666350_667301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667389_667725_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667858_668509_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668530_669949_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670018_670774_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670742_671501_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671511_672393_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672409_673117_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673119_673878_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674087_675830_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675822_676347_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676386_677181_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677348_678422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678520_679471_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679722_679929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680000_680612_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|681166_681418_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681410_682100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682117_682339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682356_683307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683946_684432_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684418_685696_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685698_687117_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|687145_688201_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688206_688449_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688571_689174_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689602_690553_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691227_691479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691541_692024_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692037_692226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692225_692621_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692617_693016_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693012_693435_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693442_693943_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694197_694716_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694725_695055_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695072_695363_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695388_698001_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698010_698370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698437_698971_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698967_699357_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699349_703306_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	709472	763402	4109686	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709472_711203_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711255_711684_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711686_712367_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712366_712825_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712861_713836_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713852_715169_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715200_715698_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715784_716474_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716473_717523_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717519_718314_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718482_718833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718808_719366_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720495_721446_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723583_724813_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724815_726258_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726362_727508_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727539_728337_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728361_729921_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729917_732290_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732399_733503_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733502_734195_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734338_735040_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735024_735402_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|736133_737084_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737243_738116_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738456_738675_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738714_740094_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|740135_741533_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741572_743225_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743228_744113_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744112_745054_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|745132_746752_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746918_747734_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747801_748371_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748371_749322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749976_751074_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751107_752373_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752530_753481_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753724_754315_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754330_756775_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756894_757866_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757997_758522_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758481_759432_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759653_761849_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761921_762329_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762451_763402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	885991	953967	4109686	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885991_887008_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887204_888188_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889786_891175_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891205_892195_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892305_893538_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893819_894620_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894642_896874_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897661_898108_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898129_898876_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899019_899997_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900630_901242_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901235_902453_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902593_903544_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903540_904260_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904380_906540_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906630_906900_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906988_907195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907193_907721_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907739_908519_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908686_909703_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909775_910267_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910277_911993_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|913156_914107_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914103_915936_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916334_916994_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917521_918202_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918483_919200_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919214_920516_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922660_925549_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925772_927125_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|927153_927675_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927671_929126_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|929160_929409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929514_930390_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930415_931471_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931483_932275_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932307_933678_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934854_935805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935857_936079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936238_936451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936570_937689_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937785_938001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938194_938446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938558_939509_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939505_939889_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939943_941758_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941907_942735_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942780_943761_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943757_943970_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943966_945148_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945311_946046_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946047_948660_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948795_950709_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951324_951735_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951832_952918_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953016_953967_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	997496	1070013	4109686	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|997496_998447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998551_999601_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999738_1000755_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002263_1002836_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002895_1003627_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003678_1004596_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005403_1008583_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008579_1009962_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010031_1010283_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010428_1011043_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011229_1013290_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013419_1014271_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014267_1014894_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014890_1016645_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016937_1019643_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019655_1021317_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021329_1023120_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023341_1024517_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024559_1025510_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025608_1026349_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026543_1028580_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028597_1029608_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029725_1030919_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030948_1031722_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031718_1032909_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032934_1033873_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033869_1036218_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036372_1037014_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038343_1038496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038527_1039076_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039094_1039580_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039757_1040696_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040698_1041016_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041061_1042006_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043686_1044337_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044390_1044726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044722_1045583_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045599_1045881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045954_1046218_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046461_1047412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047710_1048448_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048883_1049207_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049241_1049802_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049922_1050798_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050810_1051758_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051859_1052153_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1052179_1054237_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054251_1054752_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054825_1056532_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057395_1058448_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058500_1058890_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058898_1059531_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059630_1060647_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061477_1062485_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062481_1064125_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064121_1065009_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1065149_1065623_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065612_1066635_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066631_1068059_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068996_1070013_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	1073766	1135842	4109686	tRNA,transposase,holin	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1073766_1074903_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074899_1075973_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076130_1077567_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077657_1078299_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078634_1079651_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081693_1082644_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083846_1085268_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085531_1086248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086332_1086650_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086690_1087104_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087105_1087465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087507_1089052_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1089135_1089966_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1090000_1091155_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091197_1092070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092186_1094475_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095681_1096146_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1096172_1097123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1097140_1097278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097490_1098267_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098311_1099169_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099190_1100207_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100341_1101382_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101576_1103658_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103893_1105387_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105617_1106412_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106632_1107991_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107987_1108830_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108848_1110735_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110676_1110928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110972_1111605_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111623_1112226_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112377_1113328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113908_1114616_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114974_1115961_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116100_1117114_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117110_1118061_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1118078_1118219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1118173_1118632_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118668_1119982_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119999_1120371_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120367_1121831_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121971_1122700_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122681_1125531_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125743_1126694_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126861_1127686_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127685_1128564_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129468_1130584_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130612_1131407_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131403_1133269_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133347_1133980_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133976_1134279_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134321_1135842_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	1153412	1219931	4109686	tRNA,transposase	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_023853221.1|1153412_1155209_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155208_1156177_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156246_1157092_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1157159_1157714_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157760_1158711_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158809_1159442_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159606_1161889_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1162043_1164740_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164865_1165354_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167764_1170635_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170680_1171895_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1172124_1173552_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173649_1174741_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174753_1175512_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175599_1176502_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176498_1177449_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177578_1178562_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178616_1179339_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180817_1182173_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182253_1184629_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184793_1186869_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186930_1187725_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187832_1188795_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188782_1189538_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189645_1191283_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191350_1192088_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192190_1192766_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192938_1193475_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193507_1193822_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193837_1194683_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194721_1196101_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1196178_1197060_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1197158_1198109_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1198105_1198516_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198623_1199478_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199470_1200433_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200478_1201603_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201708_1202587_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202711_1203491_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203644_1205066_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205500_1207198_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207424_1208366_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208692_1209439_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209446_1210373_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210494_1211412_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211451_1212405_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212429_1213008_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214681_1215290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215367_1215721_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215804_1216794_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1216790_1216979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216996_1217947_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1218033_1218984_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218980_1219931_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	1292894	1329660	4109686	transposase	Salmonella_phage(50.0%)	36	NA	NA
WP_005013747.1|1292894_1293845_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294466_1296194_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296305_1297664_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297720_1297939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297956_1298907_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298947_1300018_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1300040_1300919_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1301090_1302062_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302224_1303067_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303228_1303909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303902_1305072_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1305068_1306100_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1306167_1307385_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307419_1308952_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1309032_1309656_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309686_1310298_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310333_1310804_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311235_1312240_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312276_1313791_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313794_1314754_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314782_1315586_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315587_1317222_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317305_1318367_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318565_1318835_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318838_1319363_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319778_1320729_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320725_1321760_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321868_1322507_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322801_1323029_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1323151_1323865_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1324109_1325060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325199_1325445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325559_1327008_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1327118_1328069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1328065_1328515_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1328709_1329660_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	1418302	1470455	4109686	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1418302_1419253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419270_1419423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419419_1419773_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419785_1420148_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420189_1420615_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420817_1422074_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422272_1423253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423402_1424644_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424742_1425693_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425701_1426397_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429218_1429818_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429828_1431994_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1432017_1433802_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433801_1433891_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434585_1434858_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434857_1436924_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436920_1437871_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437969_1438920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1439035_1439368_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439364_1440051_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1440037_1440997_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1441029_1443399_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443398_1444031_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1444132_1445473_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445519_1446875_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1447165_1447402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447589_1447907_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448179_1448695_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448965_1449721_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1450059_1450266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450273_1450933_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451227_1453432_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453542_1454766_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454888_1455863_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455930_1457124_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1457138_1457939_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457935_1459792_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459788_1460394_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460412_1461798_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462523_1463750_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463838_1464621_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464719_1465670_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465696_1466470_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466481_1467723_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469504_1470455_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	1514380	1582464	4109686	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1514380_1514869_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514986_1515565_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515670_1516039_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1516137_1517088_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1517094_1518207_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518893_1520096_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520299_1522960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522972_1526377_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1527043_1529269_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529315_1529642_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529692_1530301_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530399_1531350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531419_1532184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1532180_1532717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532883_1533735_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533794_1534421_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534417_1535368_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535466_1536579_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536568_1537570_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537675_1539187_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539183_1540488_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540599_1541160_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541427_1541982_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542437_1542653_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542907_1545505_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545501_1546689_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547346_1547961_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1548049_1549171_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549188_1550094_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550986_1551937_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1552118_1552871_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552939_1553599_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553595_1554324_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554336_1556616_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556640_1556844_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556885_1557518_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557653_1558571_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558567_1559281_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559518_1560289_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560293_1560893_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1561137_1562628_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562686_1562971_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563536_1564463_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564599_1565340_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565506_1566883_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1567064_1567970_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569621_1571424_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571541_1572192_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572290_1573241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573262_1574483_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574668_1576081_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1576144_1577212_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577211_1578699_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578708_1579653_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579812_1580511_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580588_1581494_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581513_1582464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	1618413	1674004	4109686	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618413_1619364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619422_1620196_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620188_1621745_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621741_1622692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1624018_1624621_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624860_1625562_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625555_1626338_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626522_1627473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627571_1628309_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628498_1629257_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629303_1630293_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630470_1631439_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632978_1633947_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633955_1634897_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635370_1636381_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636371_1637886_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637882_1639229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639231_1640266_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640315_1641941_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642493_1643444_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643548_1644496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644549_1646364_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646356_1647031_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1647160_1650235_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650248_1650548_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650862_1651486_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651729_1652599_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652576_1653521_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653606_1654533_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654645_1655425_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655415_1656612_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656642_1657593_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657814_1658504_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658568_1659324_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659375_1660368_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660377_1661331_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661446_1662409_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663810_1664239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664235_1665186_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665479_1666202_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666640_1667828_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667831_1668182_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669931_1670903_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670916_1671630_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671634_1672552_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672658_1672955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1673053_1674004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	1831770	1891040	4109686	tRNA,transposase,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831770_1832721_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832845_1833655_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833855_1834806_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1836079_1837297_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838353_1839256_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839332_1840205_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840335_1840704_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840761_1841808_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1842003_1843260_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843264_1844602_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844751_1845708_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845810_1846743_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846858_1847179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1847171_1847531_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847578_1849153_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849205_1850150_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1850167_1850998_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850990_1852625_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852621_1853977_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854883_1856461_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856464_1857739_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857836_1858211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859926_1861060_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1861097_1861703_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861699_1862518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862589_1865214_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865200_1865455_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865521_1866103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866406_1866667_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866832_1867456_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867455_1868229_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868225_1869434_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869459_1869933_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1870006_1870957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1871055_1872006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1872104_1873454_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874219_1874975_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1875067_1877950_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878272_1878698_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878725_1879874_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879870_1880377_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880392_1881679_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881728_1883024_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1883025_1883664_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883669_1884827_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884853_1886209_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886212_1887283_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887421_1887658_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887745_1888852_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888817_1890122_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1890140_1891040_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	1901280	1958777	4109686	transposase	Staphylococcus_phage(16.67%)	57	NA	NA
WP_005013747.1|1901280_1902231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902329_1903280_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903479_1904565_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904580_1905342_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905338_1906262_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906360_1906885_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906893_1907637_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907732_1907972_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907985_1908138_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908223_1909714_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909805_1910744_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910740_1910917_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910919_1911582_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913203_1913347_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913343_1914318_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1914212_1914467_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1914484_1915435_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915431_1916706_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916809_1918003_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917999_1918653_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918649_1920086_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1920073_1920433_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921247_1921388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930768.1|1922352_1924218_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1924475_1925996_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926083_1926734_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1927682_1928978_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1928999_1929884_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1929982_1930858_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1930847_1931204_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1931334_1932309_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1932438_1932618_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1932715_1933240_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1933250_1934087_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1934199_1934571_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1934567_1935119_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1935134_1936826_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1936874_1937555_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1937802_1938267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1938436_1939366_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1939378_1940026_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940099_1941917_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942000_1942951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1943603_1944554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1944572_1944920_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1944948_1946388_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1946406_1946802_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1946976_1947585_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|1947597_1948416_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1948367_1949342_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1949370_1950432_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1950428_1952645_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1952658_1953117_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1953274_1953619_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1953775_1954681_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1954767_1955781_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|1957760_1958777_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	1974327	2038696	4109686	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1974327_1975278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1975499_1976450_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1976548_1977514_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1977651_1978551_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1981145_1982633_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1982643_1983840_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1983912_1985232_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1985228_1986104_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1986134_1987283_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1987300_1987615_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1987636_1988359_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1988358_1989177_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1989181_1989709_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1989714_1990971_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1991329_1992469_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1992546_1993419_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1994289_1995240_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1995199_1995835_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1996194_1997517_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1997835_1998657_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000081_2000654_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2000693_2002523_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2002485_2003544_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2003581_2004043_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2004127_2004874_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2006364_2009595_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2009661_2010993_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2011245_2011620_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2011722_2012901_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2012911_2013502_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2013612_2014419_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2014444_2015239_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2016239_2017214_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017372_2017885_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018041_2019013_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2020757_2021564_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2021560_2022862_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2022812_2023577_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2023690_2024461_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2024545_2025733_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2025805_2026180_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2026280_2027543_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2027539_2028397_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2028569_2029571_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030022_2030973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2032536_2033688_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034056_2034293_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2034356_2034524_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2034637_2036533_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2036696_2037647_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2037745_2038696_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	2170223	2219876	4109686	tRNA,transposase	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2170223_2171174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2171272_2173267_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2173326_2174292_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2174281_2177143_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2177145_2177652_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2177756_2178965_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2178966_2179905_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180066_2180540_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2180536_2181487_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2181597_2182038_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2182166_2183396_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2183434_2184256_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2184309_2185461_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2185552_2186041_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2188591_2191141_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2191211_2193785_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194050_2194251_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2194282_2194444_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2194501_2194840_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2194988_2195939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2196713_2197382_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2197363_2199319_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2199561_2200311_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2200323_2201187_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2201190_2202606_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2202739_2203468_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2203606_2203807_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2203982_2204381_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2204404_2205805_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2205923_2206676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2206964_2207642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2207668_2208448_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2208444_2209329_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2209346_2210126_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210110_2210869_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2211006_2211642_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2211909_2212926_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213023_2214064_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2214198_2215491_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2216850_2217234_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2217251_2217839_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2217876_2218827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2218925_2219876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	2577753	2644253	4109686	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577753_2578704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2579073_2579646_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579648_2580659_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580651_2581152_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2581162_2581504_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2581572_2582307_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582323_2582593_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582615_2583404_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583450_2584467_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584683_2586126_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586304_2587924_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2588044_2589865_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589943_2591476_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2591509_2593156_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593225_2594248_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594265_2595399_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595401_2596091_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2596090_2596876_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596919_2597684_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597722_2599144_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2599209_2599914_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599961_2600381_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600393_2600801_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600984_2601695_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601821_2602112_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2602129_2602612_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2607117_2608272_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608577_2609594_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609840_2610629_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610695_2611376_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611372_2612143_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612241_2613192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613247_2614165_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2614175_2615354_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615373_2616369_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617957_2618566_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618553_2619594_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619611_2620574_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620570_2621764_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621760_2622558_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622583_2623570_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623588_2625628_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2625829_2626510_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626523_2627435_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627431_2628010_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2628148_2629054_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2629061_2632481_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632468_2635069_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2636024_2636657_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2637050_2637809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2637805_2639008_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2639195_2640146_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2641053_2642199_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2642185_2642941_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2643057_2643237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643302_2644253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	2672368	2710829	4109686	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2672368_2673319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2673417_2674368_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2674460_2675000_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2675106_2675451_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2675508_2676957_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2677144_2677480_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2679107_2680286_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2680368_2680869_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2680978_2681680_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2681691_2682156_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2682170_2682446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2682442_2683219_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2683247_2684075_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2684200_2684671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2684797_2685691_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2685738_2686920_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2686932_2687748_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2687881_2688409_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2688405_2688903_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2689050_2689428_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|2689649_2690600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|2690698_2691649_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2691747_2692359_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2692593_2693721_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2693831_2694920_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2694972_2695824_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2695843_2696725_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2696901_2698215_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2698425_2699259_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2699255_2699837_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2700190_2701141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2701156_2702272_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2702374_2703301_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2703300_2704539_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2704535_2705303_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2705303_2706005_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2706086_2706533_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2707422_2708061_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2708829_2709780_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2709878_2710829_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	2809956	2864473	4109686	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2809956_2810907_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2811235_2811841_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2811894_2813208_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2813282_2813753_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2813752_2814541_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2814551_2816204_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2816291_2817242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2818403_2818910_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2818906_2819671_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2819686_2819971_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2820035_2821025_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2821196_2822126_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2822097_2822784_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2822817_2823363_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2823407_2824673_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2824669_2825572_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2826753_2827698_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2827792_2829310_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2829351_2830980_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2831087_2831969_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2835081_2835456_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2835480_2835819_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2835862_2837497_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2837535_2838882_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2838989_2840411_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2840480_2841065_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2841167_2842118_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2842252_2843359_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2843369_2844467_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2844611_2845817_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2845823_2846345_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2846341_2846824_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2846829_2847081_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2847061_2847547_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2847682_2851144_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2851161_2852046_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2852055_2852487_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2852733_2853237_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2853314_2854715_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2854789_2855665_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2855661_2856669_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2857136_2857442_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2857532_2858123_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2858313_2859330_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2859521_2861858_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2861940_2862375_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2862473_2863424_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2863522_2864473_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	2872498	2929284	4109686	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2872498_2873449_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2875155_2875422_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2876129_2876468_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2881021_2881624_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2881720_2883010_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2883067_2883799_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2883795_2884599_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2884595_2885684_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2885680_2886610_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2886758_2887904_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2887925_2888876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_158322896.1|2888893_2889052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2889206_2893028_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2893184_2893853_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2893857_2895531_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2895549_2896869_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2896873_2899189_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2899244_2901413_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2901409_2906590_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2906688_2907003_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2907230_2907476_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2907570_2908089_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2908188_2909394_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2909509_2910907_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2911023_2911602_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2911674_2913066_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2913233_2914184_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2914464_2915085_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2915081_2915495_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2915491_2916535_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2916590_2916779_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2916788_2917553_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2917643_2918300_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2918391_2919150_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2919175_2920777_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2920977_2921982_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2922082_2922346_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2922463_2923240_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2923830_2924781_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2927164_2928277_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2928333_2929284_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	2959670	3003361	4109686	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2959670_2960621_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2960638_2960788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2960741_2961638_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2963915_2966141_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2966305_2967394_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2967350_2968004_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2968051_2968849_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2969380_2970331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2970411_2971560_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2971616_2972567_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2972665_2972971_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2972999_2973434_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2973435_2974680_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2974676_2975387_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2975401_2976313_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2976675_2977080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2977076_2977535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2977541_2978450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2978446_2979313_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2979299_2980127_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2980137_2981265_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2982342_2983581_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2983622_2984885_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2984891_2985644_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2985695_2985881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2986156_2986621_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2986652_2987312_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2987456_2989565_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2989561_2990512_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2990615_2991236_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2991339_2992080_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2993214_2994339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2994384_2994753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994994_2995945_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2996980_2997523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2997720_2997891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2997908_2998859_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2998855_2999764_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2999890_3000727_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3001239_3002349_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3002410_3003361_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	3383306	3437047	4109686	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3383306_3384257_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3384661_3385306_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3385330_3385915_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3386015_3386633_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3386635_3388351_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3388347_3388656_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3388672_3389290_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3389334_3389637_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3389737_3390592_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3390779_3391004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3391173_3391446_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3391863_3392271_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3392640_3393435_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3393535_3394771_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3394839_3395856_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3395867_3397244_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3397240_3398437_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3398433_3399972_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3399968_3401228_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3403168_3404119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404885_3405980_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405972_3407307_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3407260_3407944_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3407969_3409133_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3409129_3410131_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3410130_3411003_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3410999_3411749_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3411745_3412537_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412533_3413673_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413948_3414734_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414767_3415550_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415553_3415943_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3417082_3417946_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3417981_3419070_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3419066_3420017_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3420370_3423349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3424275_3425154_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3427102_3428053_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428049_3428517_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3428559_3429330_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3429350_3430151_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3430161_3431571_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3431665_3432451_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3432690_3433707_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3433814_3434207_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3434344_3435025_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3435029_3436001_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436096_3437047_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	3444236	3503534	4109686	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3444236_3446000_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3446111_3446990_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3447102_3447918_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3447921_3448173_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3448257_3449274_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3449604_3449826_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3452186_3453104_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3453601_3454810_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3454889_3456461_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3456578_3457514_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3457702_3458647_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3459214_3464932_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3464937_3466065_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3466120_3466747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3467018_3468035_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3468130_3468841_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3468837_3469827_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3469922_3471554_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471556_3472294_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472449_3473322_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3473671_3474811_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3474807_3475467_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475538_3476171_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476200_3476719_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3476729_3477839_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3477885_3478740_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3478741_3479644_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3480866_3481817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3483571_3484561_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3484736_3485525_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485521_3486553_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486571_3487135_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487190_3488711_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3488974_3489679_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3489686_3490415_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490529_3490904_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3490946_3492236_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492232_3493402_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493398_3494238_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494297_3495233_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495245_3496196_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496294_3497257_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497288_3497648_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3497772_3498675_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498676_3500449_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500483_3501260_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502583_3503534_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	3518472	3576545	4109686	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3518472_3519423_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3519551_3520685_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3520728_3521634_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3521636_3523337_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3523333_3524254_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3524261_3525239_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3525297_3526332_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3528306_3528543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3528669_3529533_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3529621_3530443_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3530522_3531260_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3531256_3532249_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3532401_3533025_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3533069_3534218_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3536541_3537492_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3537832_3538783_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3538881_3539832_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3540128_3540626_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3540668_3542444_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3542451_3543318_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3543324_3544059_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3545228_3546023_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3546312_3546903_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3546936_3548265_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3548339_3549485_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3549596_3550595_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3550557_3550992_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3552508_3553393_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3553389_3554595_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3554591_3555452_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3555564_3557355_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3557395_3558040_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3558061_3558370_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3558535_3559822_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3561255_3562206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3564157_3565372_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3565477_3566467_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3566463_3567072_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3567084_3567714_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3567710_3568331_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3568362_3569154_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3570005_3570461_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3570479_3571406_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3571459_3572746_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3573676_3574549_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3574545_3575496_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3575594_3576545_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011245	Bordetella pertussis strain J199 chromosome, complete genome	4109686	4008755	4073667	4109686	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4008755_4009241_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4009329_4009467_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4009459_4010440_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4010706_4011516_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4011555_4012236_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4012229_4012688_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4012699_4013062_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4013144_4013828_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4013883_4014192_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4014210_4014525_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4014521_4016996_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4017003_4018395_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4018391_4018577_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4018555_4019257_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4019253_4020075_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4020055_4021180_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4021172_4022192_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4022397_4023288_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4023532_4024324_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4024406_4024781_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4024758_4026168_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4026160_4027543_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4027877_4029482_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4029559_4030531_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4030541_4031468_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4031858_4032809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4032978_4034205_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4034404_4035271_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4035263_4036226_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4036326_4037277_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4037375_4038326_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4038424_4039375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4039371_4040865_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4040861_4043969_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4043965_4047034_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4047030_4048281_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4048461_4049214_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4049255_4049900_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4049908_4050889_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4050988_4051732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4051814_4052162_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4052259_4053102_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4053146_4054034_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4054060_4054249_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4054346_4055804_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4055790_4057317_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4057335_4057803_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4057802_4058825_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4058945_4059686_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4059740_4060841_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4060842_4062033_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4062152_4063169_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4063487_4064159_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4064155_4065064_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4065275_4065923_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4069783_4070851_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4070861_4071671_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4071760_4072534_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4072534_4072699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4072716_4073667_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
