The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	27282	70036	4107409	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	77634	136108	4107409	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	164893	225404	4107409	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	233336	286924	4107409	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	390857	448366	4107409	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	590420	651611	4107409	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591846_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593754_594246_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594264_595338_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595384_596488_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596563_597184_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597204_597714_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597768_598020_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598083_599217_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599224_599611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599607_602127_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602555_602894_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602890_603397_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603458_604259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604369_605311_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605404_606940_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608619_610470_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610473_611307_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611306_612248_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612499_613471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613612_615901_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616207_617116_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617170_618136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618210_619872_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619943_620654_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620620_620785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620802_621753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622451_622835_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622892_623495_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623512_623914_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624029_624941_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624937_625519_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626313_627048_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627088_628138_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628285_628864_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629250_630228_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630321_634716_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634916_635765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635923_636736_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636791_637742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637840_638641_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638702_639086_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639097_640450_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640737_641067_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641069_641819_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642001_642922_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642968_643181_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643203_643626_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643642_644743_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644839_646357_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647293_648166_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648256_649351_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649644_650595_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650669_651611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	656935	703126	4107409	tail,tRNA,transposase,terminase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656935_657961_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658001_658241_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658310_659900_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659899_660448_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660528_661101_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661119_662031_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662104_663073_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663195_664269_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664273_666094_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666170_667121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667209_667545_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667678_668329_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668350_669769_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669838_670594_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670562_671321_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671331_672213_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672229_672937_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672939_673698_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673907_675650_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675642_676167_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676206_677001_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677168_678242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678340_679291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679542_679749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679820_680432_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680986_681238_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681230_681920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681937_682159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682176_683127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683766_684252_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684238_685516_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685518_686937_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686965_688021_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688026_688269_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688391_688994_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689422_690373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691047_691299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691361_691844_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691857_692046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692045_692441_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692437_692836_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692832_693255_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693262_693763_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694017_694536_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694545_694875_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694892_695183_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695208_697821_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697830_698190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698257_698791_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698787_699177_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699169_703126_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	709292	763222	4107409	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709292_711023_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711075_711504_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711506_712187_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712186_712645_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712681_713656_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713672_714989_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715020_715518_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715604_716294_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716293_717343_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717339_718134_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718302_718653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718628_719186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720315_721266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723403_724633_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724635_726078_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726182_727328_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727359_728157_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728181_729741_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729737_732110_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732219_733323_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733322_734015_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734158_734860_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734844_735222_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735953_736904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737063_737936_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738276_738495_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738534_739914_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739955_741353_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741392_743045_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743048_743933_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743932_744874_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744952_746572_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746738_747554_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747621_748191_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748191_749142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749796_750894_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750927_752193_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752350_753301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753544_754135_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754150_756595_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756714_757686_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757817_758342_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758301_759252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759473_761669_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761741_762149_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762271_763222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	885811	1026379	4107409	transposase	Bacillus_phage(11.11%)	114	NA	NA
WP_023994644.1|885811_886828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887024_888008_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889606_890995_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891025_892015_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892125_893358_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893639_894440_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894462_896694_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897481_897928_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897949_898696_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898839_899817_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900450_901062_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901055_902273_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902413_903364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903360_904080_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904200_906360_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906450_906720_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906808_907015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907013_907541_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907559_908339_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908506_909523_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909595_910087_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910097_911813_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912976_913927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913923_915756_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916154_916814_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917341_918022_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918303_919020_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919034_920336_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922480_925369_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925592_926945_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926973_927495_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927491_928946_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928980_929229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929334_930210_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930235_931291_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931303_932095_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932127_933498_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934674_935625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935677_935899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936058_936271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936390_937509_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937605_937821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938014_938266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938378_939329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939325_939709_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939763_941578_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941727_942555_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942600_943581_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943577_943790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943786_944968_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945131_945866_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945867_948480_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948615_950529_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951144_951555_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951652_952738_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952836_953787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953783_954758_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954882_955794_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956070_956463_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956592_957543_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957572_957755_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958527_959709_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959924_960602_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960598_961324_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_005012067.1|961539_962490_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930094.1|962498_963080_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963450_966132_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|966134_967265_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|967257_968343_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968429_969329_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969325_970654_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970668_971340_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971527_973243_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973244_973604_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973795_974110_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974152_975373_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975369_976311_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976307_977297_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977331_977916_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|978014_978965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|979045_979957_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|980017_981163_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|981182_982097_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|982168_982918_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|982917_983847_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|984090_985917_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|985999_986641_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|986830_987865_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|989701_990766_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|991563_992472_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|993959_995234_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|995387_995768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|995775_996648_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|996953_997334_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|997544_998270_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|998365_999316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999420_1000470_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000607_1001624_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003132_1003705_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003764_1004496_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004547_1005465_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006272_1009452_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009448_1010831_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010900_1011152_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011297_1011912_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1012098_1014159_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014288_1015140_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015136_1015763_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015759_1017514_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017806_1020512_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020524_1022186_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022198_1023989_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024210_1025386_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025428_1026379_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	1047330	1097976	4107409	tRNA,transposase,holin	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005012067.1|1047330_1048281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048579_1049317_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049752_1050076_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050110_1050671_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050791_1051667_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051679_1052627_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052728_1053022_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053048_1055106_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055120_1055621_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055694_1057401_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058264_1059317_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059369_1059759_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059767_1060400_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1060499_1061516_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062346_1063354_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063350_1064994_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064990_1065878_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066018_1066492_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066481_1067504_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067500_1068928_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069865_1070882_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071214_1072150_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072199_1074080_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074146_1074491_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074635_1075772_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075768_1076842_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076999_1078436_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078526_1079168_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079503_1080520_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1082546_1083497_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1084699_1086121_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1086384_1087101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1087185_1087503_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1087543_1087957_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087958_1088318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1088360_1089905_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1089988_1090819_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1090853_1092008_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1092050_1092923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1093039_1095328_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1096534_1096999_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1097025_1097976_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	1113230	1178302	4107409	tRNA,transposase	Catovirus(25.0%)	46	NA	NA
WP_010929591.1|1113230_1114181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114761_1115469_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115827_1116814_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116953_1117967_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117963_1118914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1118931_1119072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1119026_1119485_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119521_1120835_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120852_1121224_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121220_1122684_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122824_1123553_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123534_1126384_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1126596_1127547_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1127714_1128539_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128538_1129417_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130321_1131437_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1131465_1132260_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132256_1134122_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134200_1134833_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134829_1135132_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135174_1136695_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1136701_1137457_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1137486_1138591_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1138693_1140394_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1140375_1141353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1141362_1142643_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1142635_1143331_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1143364_1144192_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1144473_1147704_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1148439_1152366_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1154265_1156062_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1156061_1157030_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1157099_1157945_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1158012_1158567_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1158613_1159564_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1159662_1160295_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1160459_1162742_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1162896_1165593_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1165718_1166207_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1168617_1171488_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1171533_1172748_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1172977_1174405_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1174502_1175594_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1175606_1176365_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1176452_1177355_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1177351_1178302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	1198011	1272662	4107409	tRNA,transposase	Oenococcus_phage(16.67%)	59	NA	NA
WP_010929956.1|1198011_1198962_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1198958_1199369_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1199476_1200331_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1200323_1201286_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1201331_1202456_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1202561_1203440_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1203564_1204344_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1204497_1205919_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1206353_1208051_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1208277_1209219_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1209545_1210292_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1210299_1211226_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1211347_1212265_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1212304_1213258_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1213282_1213861_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1215534_1216143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1216220_1216574_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1216657_1217647_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1217643_1217832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1217849_1218800_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1218886_1219837_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1219833_1220784_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1221044_1222073_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1222152_1223451_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1223447_1224029_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1224341_1228388_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1228628_1236290_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1236286_1237237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1238376_1238850_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1238989_1239610_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1239745_1240546_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1240600_1241692_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1241713_1242157_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1242185_1242818_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1242928_1243345_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1243337_1244030_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1244136_1244511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1244587_1245397_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1245492_1246437_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1246475_1247447_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1247537_1247975_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1248033_1248915_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1249918_1250779_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1250811_1252194_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1252190_1253210_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1253582_1254077_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1254084_1254825_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1254905_1256510_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1256549_1257338_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1257463_1259629_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1260509_1261322_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1261334_1261643_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1261760_1263491_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1263492_1264695_-	lipoprotein	NA	NA	NA	NA	NA
WP_003810957.1|1265556_1266024_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1266159_1267542_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1267538_1268663_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1268659_1271296_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1271711_1272662_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	1293747	1339478	4107409	tRNA,transposase	Salmonella_phage(33.33%)	46	NA	NA
WP_005013747.1|1293747_1294698_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1295319_1297047_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1297158_1298517_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_162496165.1|1298573_1298792_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1298809_1299760_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1299800_1300871_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1300893_1301772_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1301943_1302915_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1303077_1303920_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1304081_1304762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1304755_1305925_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1305921_1306953_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1307020_1308238_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1308272_1309805_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1309885_1310509_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1310539_1311151_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1311186_1311657_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1312088_1313093_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1313129_1314644_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1314647_1315607_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1315635_1316439_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1316440_1318075_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1318158_1319220_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1319418_1319688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1319691_1320216_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1320631_1321582_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1321578_1322613_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1322721_1323360_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1323654_1323882_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1324004_1324718_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1324962_1325913_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1326052_1326298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1326412_1327861_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1327971_1328922_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1328918_1329368_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1329562_1330513_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1330848_1331046_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1331061_1331421_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1331495_1332518_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1332530_1334948_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_023852697.1|1334965_1335295_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_003812822.1|1335353_1335764_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1336263_1337355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1337538_1338135_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1338234_1338417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1338527_1339478_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	1419155	1471308	4107409	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1419155_1420106_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1420123_1420276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1420272_1420626_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1420638_1421001_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1421042_1421468_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1421670_1422927_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1423125_1424106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1424255_1425497_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1425595_1426546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1426554_1427250_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1430071_1430671_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1430681_1432847_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1432870_1434655_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1434654_1434744_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1435438_1435711_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1435710_1437777_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1437773_1438724_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1438822_1439773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1439888_1440221_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1440217_1440904_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1440890_1441850_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1441882_1444252_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1444251_1444884_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1444985_1446326_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1446372_1447728_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1448018_1448255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1448442_1448760_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1449032_1449548_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1449818_1450574_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1450912_1451119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1451126_1451786_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1452080_1454285_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1454395_1455619_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1455741_1456716_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1456783_1457977_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1457991_1458792_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1458788_1460645_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1460641_1461247_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1461265_1462651_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1463376_1464603_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1464691_1465474_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1465572_1466523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1466549_1467323_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1467334_1468576_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1470357_1471308_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	1515233	1583319	4107409	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1515233_1515722_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1515839_1516418_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1516523_1516892_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1516990_1517941_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1517947_1519060_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1519746_1520949_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1521152_1523813_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1523825_1527230_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1527897_1530123_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1530169_1530496_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1530546_1531155_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1531253_1532204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1532273_1533038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1533034_1533571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1533737_1534589_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1534648_1535275_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1535271_1536222_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1536320_1537433_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1537422_1538424_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1538529_1540041_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1540037_1541342_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1541453_1542014_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1542281_1542836_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1543291_1543507_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1543761_1546359_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1546355_1547543_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1548201_1548816_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1548904_1550026_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1550043_1550949_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1551841_1552792_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1552973_1553726_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1553794_1554454_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1554450_1555179_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1555191_1557471_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1557495_1557699_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1557740_1558373_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1558508_1559426_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1559422_1560136_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1560373_1561144_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1561148_1561748_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1561992_1563483_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1563541_1563826_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1564391_1565318_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1565454_1566195_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1566361_1567738_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1567919_1568825_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1570476_1572279_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1572396_1573047_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1573145_1574096_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1574117_1575338_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1575523_1576936_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1576999_1578067_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1578066_1579554_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1579563_1580508_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1580667_1581366_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1581443_1582349_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1582368_1583319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	1619268	1674855	4107409	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1619268_1620219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1620277_1621051_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1621043_1622600_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1622596_1623547_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1624873_1625476_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1625715_1626417_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1626410_1627193_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1627377_1628328_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1628426_1629164_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1629353_1630112_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1630158_1631148_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1631325_1632294_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1633833_1634802_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1634810_1635752_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1636225_1637236_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1637226_1638741_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1638737_1640084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1640086_1641121_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1641170_1642796_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1643344_1644295_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1644399_1645347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1645400_1647215_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1647207_1647882_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1648011_1651086_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1651099_1651399_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1651713_1652337_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1652580_1653450_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1653427_1654372_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1654457_1655384_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1655496_1656276_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1656266_1657463_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1657493_1658444_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1658665_1659355_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1659419_1660175_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1660226_1661219_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1661228_1662182_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1662297_1663260_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1664661_1665090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1665086_1666037_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1666330_1667053_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1667491_1668679_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1668682_1669033_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1670782_1671754_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1671767_1672481_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1672485_1673403_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1673509_1673806_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1673904_1674855_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	1832622	1891891	4107409	tRNA,transposase,protease	Klosneuvirus(40.0%)	52	NA	NA
WP_005013747.1|1832622_1833573_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1833697_1834507_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1834707_1835658_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1836931_1838149_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1839205_1840108_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1840184_1841057_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1841187_1841556_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1841613_1842660_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1842855_1844112_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1844116_1845454_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1845603_1846560_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1846662_1847595_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1847710_1848031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1848023_1848383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1848430_1850005_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1850057_1851002_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1851019_1851850_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1851842_1853477_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1853473_1854829_+	amidase	NA	NA	NA	NA	NA
WP_077071153.1|1855006_1855738_+	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA	NA
WP_010930585.1|1855734_1857312_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1857315_1858590_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1858687_1859062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1860777_1861911_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1861948_1862554_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1862550_1863369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1863440_1866065_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1866051_1866306_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1866372_1866954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1867257_1867518_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1867683_1868307_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1868306_1869080_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1869076_1870285_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1870310_1870784_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1870857_1871808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1871906_1872857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1872955_1874305_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1875070_1875826_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1875918_1878801_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1879123_1879549_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1879576_1880725_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1880721_1881228_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1881243_1882530_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1882579_1883875_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1883876_1884515_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1884520_1885678_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1885704_1887060_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1887063_1888134_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1888272_1888509_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1888596_1889703_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1889668_1890973_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1890991_1891891_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	1902131	1946454	4107409	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1902131_1903082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1903180_1904131_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1904330_1905416_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1905431_1906193_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1906189_1907113_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1907211_1907736_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1907744_1908488_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1908583_1908823_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1908836_1908989_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1909074_1910565_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1910656_1911595_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1911591_1911768_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1911770_1912433_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1914054_1914198_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1914194_1915169_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1915063_1915318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1915335_1916286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1916282_1917557_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1917660_1918854_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1918850_1919504_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1919500_1920937_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1920924_1921284_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1922098_1922239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1922256_1923207_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1924252_1926118_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1926375_1927896_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1927983_1928634_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1929582_1930878_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1930899_1931784_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1931882_1932758_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1932747_1933104_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1933234_1934209_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1934338_1934518_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1934615_1935140_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1935150_1935987_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1936099_1936471_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1936467_1937019_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1937034_1938726_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1938774_1939455_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1939702_1940167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1940336_1941266_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1941278_1941926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1941999_1943817_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1943900_1944851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1945503_1946454_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	1976227	2040603	4107409	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1976227_1977178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1977399_1978350_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1978448_1979414_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1979551_1980451_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1983045_1984533_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1984543_1985740_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1985812_1987132_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1987128_1988004_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1988034_1989183_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1989200_1989515_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1989536_1990259_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1990258_1991077_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1991081_1991609_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1991614_1992871_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1993229_1994369_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1994446_1995319_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1996189_1997140_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1997099_1997735_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1998094_1999417_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1999735_2000557_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2001988_2002561_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2002600_2004430_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2004392_2005451_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2005488_2005950_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2006034_2006781_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2008271_2011502_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2011568_2012900_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2013152_2013527_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2013629_2014808_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2014818_2015409_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2015519_2016326_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2016351_2017146_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2018146_2019121_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2019279_2019792_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2019948_2020920_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2022664_2023471_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2023467_2024769_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2024719_2025484_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2025597_2026368_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2026452_2027640_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2027712_2028087_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2028187_2029450_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2029446_2030304_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2030476_2031478_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2031929_2032880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2034443_2035595_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2035963_2036200_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2036263_2036431_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2036544_2038440_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2038603_2039554_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2039652_2040603_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	2172132	2221785	4107409	tRNA,transposase	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2172132_2173083_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2173181_2175176_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2175235_2176201_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2176190_2179052_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2179054_2179561_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2179665_2180874_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2180875_2181814_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2181975_2182449_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2182445_2183396_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2183506_2183947_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2184075_2185305_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2185343_2186165_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2186218_2187370_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2187461_2187950_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2190500_2193050_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2193120_2195694_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2195959_2196160_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2196191_2196353_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2196410_2196749_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2196897_2197848_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2198622_2199291_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2199272_2201228_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2201470_2202220_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2202232_2203096_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2203099_2204515_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2204648_2205377_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2205515_2205716_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2205891_2206290_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2206313_2207714_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2207832_2208585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2208873_2209551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2209577_2210357_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2210353_2211238_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2211255_2212035_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2212019_2212778_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2212915_2213551_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2213818_2214835_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2214932_2215973_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2216107_2217400_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2218759_2219143_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2219160_2219748_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2219785_2220736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2220834_2221785_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	2577564	2644064	4107409	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577564_2578515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578884_2579457_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579459_2580470_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580462_2580963_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2580973_2581315_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2581383_2582118_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582134_2582404_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582426_2583215_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583261_2584278_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584494_2585937_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586115_2587735_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2587855_2589676_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589754_2591287_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2591320_2592967_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593036_2594059_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594076_2595210_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595212_2595902_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595901_2596687_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596730_2597495_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597533_2598955_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2599020_2599725_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599772_2600192_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600204_2600612_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600795_2601506_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601632_2601923_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601940_2602423_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606928_2608083_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608388_2609405_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609651_2610440_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610506_2611187_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611183_2611954_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612052_2613003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613058_2613976_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2613986_2615165_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615184_2616180_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617768_2618377_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618364_2619405_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619422_2620385_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620381_2621575_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621571_2622369_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622394_2623381_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623399_2625439_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2625640_2626321_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626334_2627246_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627242_2627821_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627959_2628865_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628872_2632292_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632279_2634880_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635835_2636468_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636861_2637620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2637616_2638819_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2639006_2639957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640864_2642010_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2641996_2642752_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642868_2643048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643113_2644064_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	2672179	2709591	4107409	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2672179_2673130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2673228_2674179_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2674271_2674811_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2674917_2675262_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2675319_2676768_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2676955_2677291_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2678918_2680097_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2680179_2680680_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2680789_2681491_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2681502_2681967_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2681981_2682257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2682253_2683030_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2683058_2683886_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2684011_2684482_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2684608_2685502_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2685549_2686731_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2686743_2687559_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2687692_2688220_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2688216_2688714_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2688861_2689239_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2689460_2690411_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2690509_2691121_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2691355_2692483_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2692593_2693682_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2693734_2694586_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2694605_2695487_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2695663_2696977_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2697187_2698021_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2698017_2698599_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2698952_2699903_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2699918_2701034_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2701136_2702063_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2702062_2703301_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2703297_2704065_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2704065_2704767_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2704848_2705295_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2706184_2706823_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2707591_2708542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2708640_2709591_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	2808718	2863235	4107409	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2808718_2809669_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2809997_2810603_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810656_2811970_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812044_2812515_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812514_2813303_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813313_2814966_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815053_2816004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817165_2817672_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817668_2818433_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818448_2818733_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818797_2819787_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819958_2820888_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820859_2821546_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821579_2822125_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822169_2823435_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823431_2824334_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825515_2826460_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826554_2828072_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828113_2829742_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829849_2830731_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833843_2834218_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834242_2834581_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834624_2836259_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836297_2837644_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837751_2839173_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839242_2839827_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839929_2840880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841014_2842121_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842131_2843229_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843373_2844579_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844585_2845107_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2845103_2845586_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845591_2845843_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845823_2846309_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846444_2849906_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849923_2850808_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850817_2851249_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851495_2851999_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852076_2853477_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853551_2854427_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854423_2855431_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855898_2856204_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856294_2856885_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857075_2858092_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858283_2860620_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860702_2861137_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2861235_2862186_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862284_2863235_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	2871260	2928046	4107409	protease,transposase	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2871260_2872211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873917_2874184_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874891_2875230_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879783_2880386_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880482_2881772_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881829_2882561_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882557_2883361_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883357_2884446_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884442_2885372_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885520_2886666_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886687_2887638_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2887655_2887814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2887968_2891790_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891946_2892615_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892619_2894293_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894311_2895631_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895635_2897951_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898006_2900175_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2900171_2905352_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905450_2905765_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2905992_2906238_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906332_2906851_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906950_2908156_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908271_2909669_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909785_2910364_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910436_2911828_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2911995_2912946_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913226_2913847_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913843_2914257_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914253_2915297_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915352_2915541_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915550_2916315_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916405_2917062_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917153_2917912_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917937_2919539_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919739_2920744_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920844_2921108_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921225_2922002_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922592_2923543_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925926_2927039_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927095_2928046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	2958431	3002122	4107409	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2958431_2959382_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959399_2959549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959502_2960399_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962676_2964902_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965066_2966155_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966111_2966765_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966812_2967610_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968141_2969092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2969172_2970321_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970377_2971328_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971426_2971732_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971760_2972195_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972196_2973441_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973437_2974148_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974162_2975074_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975436_2975841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975837_2976296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976302_2977211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2977207_2978074_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978060_2978888_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978898_2980026_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981103_2982342_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982383_2983646_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983652_2984405_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984456_2984642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984917_2985382_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985413_2986073_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986217_2988326_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988322_2989273_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989376_2989997_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2990100_2990841_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2991975_2993100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993145_2993514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993755_2994706_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995741_2996284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996481_2996652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996669_2997620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2997616_2998525_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998651_2999488_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000000_3001110_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001171_3002122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	3382060	3435801	4107409	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3382060_3383011_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383415_3384060_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384084_3384669_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384769_3385387_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385389_3387105_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387101_3387410_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387426_3388044_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388088_3388391_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388491_3389346_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389533_3389758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389927_3390200_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390617_3391025_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391394_3392189_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392289_3393525_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393593_3394610_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394621_3395998_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3395994_3397191_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397187_3398726_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398722_3399982_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401922_3402873_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403639_3404734_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404726_3406061_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406014_3406698_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3406723_3407887_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3407883_3408885_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408884_3409757_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409753_3410503_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410499_3411291_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411287_3412427_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412702_3413488_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413521_3414304_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414307_3414697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3415836_3416700_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3416735_3417824_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417820_3418771_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419124_3422103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423029_3423908_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3425856_3426807_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426803_3427271_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427313_3428084_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3428104_3428905_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3428915_3430325_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430419_3431205_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431444_3432461_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432568_3432961_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433098_3433779_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433783_3434755_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3434850_3435801_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	3441956	3501254	4107409	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3441956_3443720_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3443831_3444710_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3444822_3445638_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445641_3445893_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3445977_3446994_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3447324_3447546_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3449906_3450824_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3451321_3452530_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3452609_3454181_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3454298_3455234_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3455422_3456367_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3456934_3462652_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3462657_3463785_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3463840_3464467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3464738_3465755_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3465850_3466561_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466557_3467547_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467642_3469274_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469276_3470014_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470169_3471042_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3471391_3472531_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472527_3473187_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473258_3473891_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3473920_3474439_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474449_3475559_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475605_3476460_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476461_3477364_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478586_3479537_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481291_3482281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3482456_3483245_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483241_3484273_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484291_3484855_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3484910_3486431_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486694_3487399_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3487406_3488135_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488249_3488624_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488666_3489956_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3489952_3491122_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491118_3491958_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492017_3492953_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3492965_3493916_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494014_3494977_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495008_3495368_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495492_3496395_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496396_3498169_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498203_3498980_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500303_3501254_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	3516192	3574265	4107409	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3516192_3517143_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3517271_3518405_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3518448_3519354_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3519356_3521057_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521053_3521974_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3521981_3522959_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3523017_3524052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3526026_3526263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3526389_3527253_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3527341_3528163_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3528242_3528980_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3528976_3529969_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3530121_3530745_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3530789_3531938_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3534261_3535212_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535552_3536503_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536601_3537552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3537848_3538346_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538388_3540164_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540171_3541038_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541044_3541779_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3542948_3543743_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544032_3544623_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544656_3545985_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546059_3547205_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547316_3548315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548277_3548712_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550228_3551113_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551109_3552315_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552311_3553172_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3553284_3555075_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3555115_3555760_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3555781_3556090_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556255_3557542_-	membrane protein	NA	NA	NA	NA	NA
WP_077108686.1|3558975_3559926_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3561877_3563092_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563197_3564187_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564183_3564792_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564804_3565434_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565430_3566051_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566082_3566874_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3567725_3568181_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3568199_3569126_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569179_3570466_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571396_3572269_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572265_3573216_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573314_3574265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP012135	Bordetella pertussis strain J014 chromosome, complete genome	4107409	4006477	4071389	4107409	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4006477_4006963_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4007051_4007189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4007181_4008162_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4008428_4009238_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4009277_4009958_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4009951_4010410_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4010421_4010784_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4010866_4011550_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4011605_4011914_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4011932_4012247_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4012243_4014718_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4014725_4016117_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4016113_4016299_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4016277_4016979_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4016975_4017797_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4017777_4018902_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4018894_4019914_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4020119_4021010_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4021254_4022046_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4022128_4022503_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4022480_4023890_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4023882_4025265_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4025599_4027204_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4027281_4028253_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4028263_4029190_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4029580_4030531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030700_4031927_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032126_4032993_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4032985_4033948_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034048_4034999_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035097_4036048_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036146_4037097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037093_4038587_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038583_4041691_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041687_4044756_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044752_4046003_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4046183_4046936_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4046977_4047622_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4047630_4048611_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048710_4049454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4049536_4049884_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4049981_4050824_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050868_4051756_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051782_4051971_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052068_4053526_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053512_4055039_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055057_4055525_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4055524_4056547_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4056667_4057408_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4057462_4058563_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058564_4059755_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059874_4060891_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061209_4061881_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061877_4062786_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4062997_4063645_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4067505_4068573_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068583_4069393_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4069482_4070256_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4070256_4070421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4070438_4071389_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
