The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	0	59497	4082563	tRNA,transposase	Natrialba_phage(12.5%)	54	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_077069004.1|21943_22894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013036.1|22911_23100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|28331_29282_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29723_30158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|30190_31408_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31413_31911_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|33263_34055_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010930208.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	70134	123122	4082563	tRNA,transposase	Planktothrix_phage(20.0%)	50	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	165944	226455	4082563	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165944_166895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168338_169241_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169218_169848_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170130_171561_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171594_172224_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172272_173880_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173904_174588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174669_175146_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175352_176303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177418_177946_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178037_178853_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178913_179648_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179685_181764_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182013_182286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182387_183473_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183476_185381_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185377_189052_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189112_189676_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189683_190106_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190133_190553_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190581_191028_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191154_191652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191806_194077_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194152_195358_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195456_196407_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196509_197145_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197141_198035_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198429_199530_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199611_199986_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200045_202910_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203054_203795_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203864_205076_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205104_206073_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206686_207637_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207793_208117_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208221_209262_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209267_210047_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210092_210389_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210414_210690_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210746_211391_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211390_212077_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212275_213058_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213108_213834_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213865_215215_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215326_216259_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216716_219512_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220105_222949_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223119_223839_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223877_224426_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224580_225480_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225504_226455_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	234387	287975	4082563	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234387_235338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235424_236375_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236371_237322_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237420_238218_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239167_239578_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240599_241343_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241386_242430_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242600_244703_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246113_247070_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247088_247580_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247576_248932_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248932_249631_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249627_250329_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250581_251631_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251736_252678_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252674_254564_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254650_255289_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255431_256817_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256747_257284_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257435_258827_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258843_259824_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259959_260943_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261007_261907_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262013_263768_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263775_264900_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264913_265894_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266624_267575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268134_268680_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268805_270383_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270398_271553_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271566_271692_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271688_273440_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273436_275116_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275178_275727_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276869_277148_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278191_279142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279128_279344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279419_279581_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280247_280697_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280706_281318_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281476_282325_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282350_283733_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283797_284439_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284578_285037_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285061_285838_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285891_287028_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287024_287975_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	391907	449416	4082563	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391907_392858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392994_393912_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393908_394157_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394153_395359_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395431_396427_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396449_397670_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397666_398311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400041_400851_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401155_402109_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402207_403191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403117_403819_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403867_404638_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404634_405813_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405980_407687_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407683_408580_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408620_410210_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410259_411252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411320_411920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412380_413361_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413436_414387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414475_415390_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415386_416046_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416135_417059_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417064_417520_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417516_418620_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418578_418848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418807_420427_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420423_421482_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421611_422106_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422198_423176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423371_424577_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424573_426085_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426100_427414_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427604_427784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428193_428928_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431372_432323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432454_432853_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433263_433734_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433822_434167_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434266_435667_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437455_437974_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438084_438840_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439035_440268_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440260_441046_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441112_442084_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442094_443072_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443197_444370_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444396_445425_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445490_446684_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448465_449416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	590421	651613	4082563	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590421_591372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591847_592738_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592734_593556_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593756_594248_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594266_595340_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595386_596490_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596565_597186_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597206_597716_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597770_598022_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598085_599219_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599226_599613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599609_602129_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602557_602896_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602892_603399_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603460_604261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604371_605313_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605406_606942_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608621_610472_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610475_611309_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611308_612250_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612501_613473_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613614_615903_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616209_617118_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617172_618138_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618212_619874_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619945_620656_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620622_620787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620804_621755_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622453_622837_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622894_623497_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623514_623916_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624031_624943_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624939_625521_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626315_627050_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627090_628140_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628287_628866_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629252_630230_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630323_634718_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634918_635767_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635925_636738_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636793_637744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637842_638643_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638704_639088_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639099_640452_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640739_641069_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641071_641821_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642003_642924_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642970_643183_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643205_643628_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643644_644745_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644841_646359_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646434_647274_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647295_648168_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648258_649353_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649646_650597_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650671_651613_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	656937	703129	4082563	tRNA,transposase,tail,terminase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656937_657963_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658003_658243_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658312_659902_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659901_660450_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660530_661103_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661121_662033_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662106_663075_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663197_664271_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664275_666096_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666172_667123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667211_667547_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667680_668331_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668352_669771_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669840_670596_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670564_671323_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671333_672215_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672231_672939_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672941_673700_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673909_675652_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675644_676169_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676208_677003_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677170_678244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678342_679293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679544_679751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679822_680434_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680988_681240_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681232_681922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681939_682161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682178_683129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683769_684255_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684241_685519_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685521_686940_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686968_688024_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688029_688272_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688394_688997_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689425_690376_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691050_691302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691364_691847_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691860_692049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692048_692444_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692440_692839_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692835_693258_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693265_693766_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694020_694539_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694548_694878_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694895_695186_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695211_697824_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697833_698193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698260_698794_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698790_699180_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699172_703129_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	709295	763225	4082563	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709295_711026_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711078_711507_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711509_712190_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712189_712648_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712684_713659_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713675_714992_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715023_715521_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715607_716297_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716296_717346_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717342_718137_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718305_718656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718631_719189_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720318_721269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723406_724636_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724638_726081_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726185_727331_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727362_728160_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728184_729744_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729740_732113_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732222_733326_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733325_734018_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734161_734863_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734847_735225_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735956_736907_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737066_737939_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738279_738498_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738537_739917_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739958_741356_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741395_743048_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743051_743936_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743935_744877_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744955_746575_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746741_747557_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747624_748194_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748194_749145_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749799_750897_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750930_752196_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752353_753304_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753547_754138_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754153_756598_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756717_757689_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757820_758345_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758304_759255_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759476_761672_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761744_762152_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762274_763225_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	885814	1027431	4082563	transposase	Bacillus_phage(11.11%)	115	NA	NA
WP_023994644.1|885814_886831_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887027_888011_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889609_890998_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891028_892018_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892128_893361_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893642_894443_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894465_896697_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897484_897931_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897952_898699_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898842_899820_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900453_901065_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901058_902276_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902416_903367_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903363_904083_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904203_906363_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906453_906723_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906811_907018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907016_907544_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907562_908342_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908509_909526_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909598_910090_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910100_911816_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912979_913930_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913926_915759_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916157_916817_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917344_918025_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918306_919023_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919037_920339_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922483_925372_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925595_926948_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926976_927498_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927494_928949_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928983_929232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929337_930213_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930238_931294_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931306_932098_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932130_933501_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934677_935628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935680_935902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936061_936274_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936393_937512_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937608_937824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938017_938269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938381_939332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939328_939712_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939766_941581_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941730_942558_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942603_943584_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943580_943793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943789_944971_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945134_945869_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945870_948483_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948618_950532_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951147_951558_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951655_952741_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952839_953790_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953786_954761_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954885_955797_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956073_956466_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956595_957546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957575_957758_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958530_959712_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959927_960605_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960601_961327_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961452_962034_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962404_965086_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|965088_966219_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|966211_967297_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967383_968283_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968279_969608_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969622_970294_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970481_972197_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972198_972558_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972749_973064_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973106_974327_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974323_975265_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975261_976251_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976285_976870_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976968_977919_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977999_978911_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978971_980117_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980136_981051_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981122_981872_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981871_982801_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983044_984871_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984953_985595_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985784_986819_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988655_989720_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990517_991426_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992913_994188_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994341_994722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994729_995602_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995907_996288_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996498_997224_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_010929591.1|997319_998270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998374_999424_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|999561_1000578_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002086_1002659_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002718_1003450_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_102955753.1|1003501_1004419_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005226_1008406_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008402_1009785_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009854_1010106_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010251_1010866_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011052_1013113_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013242_1014094_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014090_1014717_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014713_1016468_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016760_1019466_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019478_1021140_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021152_1022943_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023164_1024340_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024382_1025333_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|1025431_1026382_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1026480_1027431_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	1048382	1089026	4082563	holin,tRNA,transposase	uncultured_Mediterranean_phage(50.0%)	34	NA	NA
WP_005012067.1|1048382_1049333_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049631_1050369_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050804_1051128_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051162_1051723_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051843_1052719_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052731_1053679_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053780_1054074_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054100_1056158_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056172_1056673_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056746_1058453_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059316_1060369_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060421_1060811_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060819_1061452_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010929632.1|1061551_1062568_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063398_1064406_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064402_1066046_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066042_1066930_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067070_1067544_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067533_1068556_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068552_1069980_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070917_1071934_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1072266_1073202_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1073251_1075132_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1075198_1075543_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1075687_1076824_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076820_1077894_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078051_1079488_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079578_1080220_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1080556_1081573_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1083513_1084464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1085768_1087190_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1087453_1088170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088254_1088572_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088612_1089026_+|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 11
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	1098094	1160634	4082563	tRNA,transposase	Planktothrix_phage(18.18%)	51	NA	NA
WP_005013747.1|1098094_1099045_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1099062_1099200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1099412_1100189_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1100233_1101091_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1101112_1102129_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1102263_1103304_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1103498_1105580_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1105815_1107309_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1107539_1108334_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1108554_1109913_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1109909_1110752_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1110770_1112657_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1112598_1112850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1112894_1113527_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1113545_1114148_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1114299_1115250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1115830_1116538_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1116896_1117883_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1118022_1119036_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1119032_1119983_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1120000_1120141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1120095_1120554_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1120590_1121904_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1121921_1122293_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1122289_1123753_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1123893_1124622_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1124603_1127453_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1127665_1128616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1128783_1129608_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1129607_1130486_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1131390_1132506_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1132534_1133329_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1133325_1135191_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1135269_1135902_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1135898_1136201_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1136243_1137764_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1137770_1138526_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1138555_1139660_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1139762_1141463_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1141444_1142422_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1142431_1143712_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1143704_1144400_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1144433_1145261_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1145542_1148773_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_162290921.1|1148865_1149219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930196.1|1149509_1153436_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1155335_1157132_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1157131_1158100_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1158169_1159015_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1159082_1159637_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1159683_1160634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	1319004	1387491	4082563	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1319004_1319955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320723_1321362_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322251_1322698_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1322779_1323481_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323481_1324249_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324245_1325484_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325483_1326410_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326512_1327628_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327643_1328594_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328947_1329529_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329525_1330359_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330569_1331883_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332059_1332941_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332960_1333812_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333864_1334953_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335063_1336191_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336425_1337037_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337135_1338086_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338307_1338685_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338832_1339330_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339326_1339854_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339987_1340803_+	exported protein	NA	NA	NA	NA	NA
WP_077123296.1|1340815_1341997_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342044_1342938_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343064_1343535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343660_1344488_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344516_1345293_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345289_1345565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345579_1346044_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346055_1346757_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1346866_1347367_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347449_1348628_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350255_1350591_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350778_1352227_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352284_1352629_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352735_1353275_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353367_1354318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1354335_1354575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1355056_1355488_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1355669_1356074_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1357310_1357634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1357636_1358524_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1358556_1358982_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1359053_1359407_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1359646_1360153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1360191_1361523_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1361582_1362398_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1362394_1363249_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1366311_1368855_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_077123297.1|1370221_1371976_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1371972_1374093_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1374097_1376293_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1376289_1379631_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1382433_1383384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383449_1383629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1383745_1384501_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384487_1385633_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386540_1387491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	1447979	1503467	4082563	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1447979_1448930_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1450131_1450578_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1450570_1452046_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1452042_1452798_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1452790_1453801_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1453790_1455467_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1455779_1456112_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1456125_1456521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1456530_1456857_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1456853_1457180_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1457106_1458129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1458125_1458476_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1458523_1458952_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1458959_1460333_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1460473_1460851_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1461113_1462421_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1462481_1463312_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1463308_1463797_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1463838_1465359_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1465402_1465879_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1466682_1469280_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1469309_1470131_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1470857_1471607_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1471790_1472669_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1472766_1473483_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1473497_1474058_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1474224_1474989_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1475008_1475866_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1475862_1477062_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1477101_1478436_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478488_1480825_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480950_1481514_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481522_1482614_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482685_1483141_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483141_1483936_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483932_1485114_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485100_1485706_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485702_1486476_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486487_1487315_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487476_1489840_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489907_1490627_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490750_1491176_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1491210_1492161_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492278_1493205_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493270_1494428_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494408_1494876_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1495023_1495974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495990_1496425_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496414_1496765_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496961_1498116_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1498112_1499285_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499332_1500226_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500271_1500709_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500768_1501458_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501467_1502418_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1502516_1503467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	1598165	1658077	4082563	tRNA,transposase	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1598165_1598654_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598771_1599350_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599455_1599824_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1599922_1600873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1600879_1601992_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1602678_1603881_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1604084_1606745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1606757_1610162_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1610829_1613055_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1613101_1613428_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1613478_1614087_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1614185_1615136_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1615234_1616185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616254_1617019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1617015_1617552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617718_1618570_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618629_1619256_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619252_1620203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620301_1621414_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621403_1622405_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1622510_1624022_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1624018_1625323_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1625434_1625995_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626262_1626817_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627272_1627488_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627742_1630340_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630336_1631524_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1632182_1632797_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1632885_1634007_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1634024_1634930_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635822_1636773_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636954_1637707_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637775_1638435_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638431_1639160_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639172_1641452_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1641476_1641680_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641721_1642354_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1642489_1643407_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643403_1644117_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644354_1645125_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645129_1645729_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645973_1647464_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1647522_1647807_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1648372_1649299_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649435_1650176_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650342_1651719_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651900_1652806_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1654457_1656260_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1656377_1657028_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1657126_1658077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	1703249	1758840	4082563	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1703249_1704200_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704258_1705032_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705024_1706581_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1706577_1707528_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1708854_1709457_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1709696_1710398_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1710391_1711174_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711358_1712309_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1712407_1713145_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713334_1714093_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1714139_1715129_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715306_1716275_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1717814_1718783_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1718791_1719733_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1720206_1721217_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1721207_1722722_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1722718_1724065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1724067_1725102_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1725151_1726777_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727329_1728280_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1728384_1729332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1729385_1731200_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731192_1731867_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1731996_1735071_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1735084_1735384_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1735698_1736322_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1736565_1737435_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1737412_1738357_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1738442_1739369_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1739481_1740261_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740251_1741448_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1741478_1742429_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1742650_1743340_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1743404_1744160_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744211_1745204_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745213_1746167_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746282_1747245_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1748646_1749075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1749071_1750022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1750315_1751038_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1751476_1752664_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1752667_1753018_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1754767_1755739_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1755752_1756466_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1756470_1757388_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1757494_1757791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1757889_1758840_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	1992653	2062305	4082563	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1992653_1995311_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1995388_1996591_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1996587_1997100_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1997222_1997660_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1997936_1998887_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1998985_1999936_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|2000099_2001995_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2002108_2002276_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2002339_2002576_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2002944_2004096_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2005659_2006610_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2007061_2008063_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2008235_2009093_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2009089_2010352_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2010452_2010827_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2010899_2012087_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2012171_2012942_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2013055_2013820_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2013770_2015072_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2015068_2015875_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2017619_2018591_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018747_2019260_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2019418_2020393_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2021393_2022188_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2022213_2023020_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2023130_2023721_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2023731_2024910_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2025012_2025387_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2025639_2026971_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2027037_2030268_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2031758_2032505_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2032589_2033051_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2033088_2034147_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2034109_2035939_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2035978_2036551_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2037975_2038797_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2039115_2040438_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2040797_2041433_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2041392_2042343_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2043213_2044086_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2044163_2045303_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2045661_2046918_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2046923_2047451_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2047455_2048274_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2048273_2048996_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2049017_2049332_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2049349_2050498_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2050528_2051404_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2051400_2052720_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2052792_2053989_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2053999_2055487_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2058081_2058981_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2059118_2060084_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2060182_2061133_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2061354_2062305_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	2073801	2123197	4082563	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2073801_2074752_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2075889_2076186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2076360_2077713_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2077855_2078872_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2080851_2081865_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2081951_2082857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2083013_2083358_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2083515_2083974_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2083987_2086204_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2086200_2087262_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2087290_2088265_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2088216_2089035_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2089047_2089656_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2089830_2090226_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2090244_2091684_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2091712_2092060_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2092078_2093029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2093681_2094632_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2094715_2096533_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2096606_2097254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2097266_2098196_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2098365_2098830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2099077_2099758_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2099806_2101498_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2101513_2102065_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2102061_2102433_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2102545_2103382_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2103392_2103917_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2104014_2104194_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2104323_2105298_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2105428_2105785_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2105774_2106650_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2106748_2107633_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2107654_2108950_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2109898_2110549_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2110636_2112157_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2112414_2114280_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2115325_2116276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2116293_2116434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2117248_2117608_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2117595_2119032_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2119028_2119682_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2119678_2120872_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2120975_2122250_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2122246_2123197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	2134401	2175092	4082563	tRNA,transposase,protease	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2134401_2135352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2135450_2136401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2136360_2136774_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2137058_2137358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2137767_2140050_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2140735_2142766_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2142785_2142998_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2143275_2143815_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2143928_2145224_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2145300_2146458_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2146641_2147541_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2147559_2148864_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2148829_2149936_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2150023_2150260_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2150398_2151469_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2151472_2152828_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2152854_2154012_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2154017_2154656_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2154657_2155953_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2156002_2157289_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2157304_2157811_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2157807_2158956_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2158983_2159409_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2159731_2162614_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2162706_2163462_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2164227_2165577_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2165675_2166626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2166724_2167675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2167748_2168222_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2168247_2169456_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2169452_2170226_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2170225_2170849_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2171014_2171275_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2171578_2172160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2172226_2172481_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2172467_2175092_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	2202875	2268425	4082563	tRNA,transposase,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2202875_2203826_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2204026_2204836_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2204960_2205911_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2205907_2206801_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2206925_2207120_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2207119_2207461_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2207470_2209333_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2209462_2209975_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2209977_2210301_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2210302_2210713_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2210750_2211962_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2211979_2212492_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2212707_2213199_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2213451_2215488_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2215565_2216768_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2216896_2217547_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2219104_2220055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2220625_2220838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2220855_2221587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2221621_2222263_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2222255_2222924_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2225136_2225913_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2225934_2227092_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2227088_2227520_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2227516_2228314_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2228333_2228735_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2228801_2229773_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2229838_2231062_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2231289_2232240_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2232364_2234818_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2235006_2236311_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2236415_2237069_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2237071_2238382_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2238560_2239139_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2239250_2239451_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2239796_2240363_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2240446_2240650_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2240956_2241277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2241318_2241600_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2241674_2242931_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2243313_2243643_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2245213_2246035_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2246034_2247174_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2247180_2248077_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2248091_2249999_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2250358_2252971_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2253023_2255324_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2255320_2256529_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2256790_2257165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2257161_2258112_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2258210_2260205_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2260264_2261230_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2261219_2264081_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2264083_2264590_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2264694_2265903_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2265904_2266843_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2267004_2267478_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2267474_2268425_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	2354600	2418178	4082563	transposase,protease	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2354600_2355551_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2355852_2356329_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2356952_2358590_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2358620_2359934_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2360067_2360385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2360485_2361808_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2361804_2362755_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2362853_2363804_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2364333_2365356_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2365384_2366215_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2366231_2367929_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2367993_2369070_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2369229_2370093_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2370123_2370693_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2370709_2371561_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2372618_2373500_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2373574_2374564_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2374626_2375577_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2375639_2376497_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2376556_2377045_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2378617_2379808_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2379804_2381391_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2381409_2382477_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2382581_2384126_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2384545_2386120_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2386236_2387244_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2387240_2388080_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2388084_2389722_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2389718_2390669_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2390686_2390830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2390811_2392086_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2392115_2392406_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2392478_2393492_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2393511_2394774_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2394776_2395700_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2395696_2397190_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2397200_2398133_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2398314_2399640_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2399674_2401030_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2401090_2402611_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2402765_2403497_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2403594_2404905_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2404920_2405832_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2405822_2406416_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2406477_2406864_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2406875_2407346_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2407357_2407981_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2408001_2410749_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2417227_2418178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	2538326	2604048	4082563	tRNA,transposase,protease	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2538326_2540270_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2540266_2541187_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2541206_2541794_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2541786_2542677_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2542673_2543435_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2543440_2544325_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2544347_2546141_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2546271_2547759_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2547796_2548855_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2548854_2549355_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2549367_2549967_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2549963_2550464_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2550465_2551695_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2551884_2552124_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2552306_2553059_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2553060_2553996_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2554077_2555064_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2555063_2556122_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2556178_2556361_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2556412_2557006_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2557114_2557714_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2557710_2558421_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2558422_2559250_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2561066_2562308_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2562319_2563093_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2563119_2564070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2564168_2564951_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2565039_2566266_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2566991_2568377_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2568395_2569001_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2568997_2570854_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2570850_2571651_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2571665_2572859_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2572926_2573901_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2574023_2575247_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2575357_2577562_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2577856_2578516_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2578523_2578730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2579068_2579824_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2580094_2580610_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2580882_2581200_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2581387_2581624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2581914_2583270_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2583316_2584657_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2584758_2585391_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2585390_2587760_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2587792_2588752_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2588738_2589425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2589421_2589754_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2589869_2590820_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2590918_2591869_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2591865_2593932_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2593931_2594204_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2594899_2594989_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2594988_2596773_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2596796_2598962_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2598972_2599572_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2602393_2603089_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2603097_2604048_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	2690166	2730835	4082563	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2690166_2691117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2691227_2691410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2691509_2692106_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2692289_2693381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2693880_2694291_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2694349_2694679_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2694696_2697114_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2697126_2698149_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2698223_2698583_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2698598_2698796_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2699131_2700082_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2700276_2700726_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2700722_2701673_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2701783_2703232_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2703346_2703592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2703731_2704682_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2704926_2705640_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2705762_2705990_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2706284_2706923_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2707031_2708066_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2708062_2709013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2709428_2709953_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2709956_2710226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2710424_2711486_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2711569_2713204_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2713205_2714009_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2714037_2714997_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2715000_2716515_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2716551_2717556_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2717987_2718458_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2718493_2719105_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2719135_2719759_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2719839_2721372_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2721406_2722624_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2722691_2723723_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2723719_2724889_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2724882_2725563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2725724_2726567_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2726729_2727701_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2727872_2728751_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2728773_2729844_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2729884_2730835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	2786300	2859170	4082563	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2786300_2786717_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2786827_2787460_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2787488_2787932_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2787953_2789045_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2789099_2789900_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2790035_2790656_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2790795_2791269_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2792408_2793359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2793355_2801017_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2801257_2805304_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2805616_2806198_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2806194_2807493_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2807572_2808601_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2808861_2809812_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2809808_2810759_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2811075_2811681_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2811734_2813048_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2813122_2813593_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2813592_2814381_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2814391_2816044_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2816131_2817082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2818243_2818750_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2818746_2819511_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2819526_2819811_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2819875_2820865_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2821036_2821966_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2821937_2822624_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2822657_2823203_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2823247_2824513_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2824509_2825412_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2826593_2827538_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2827632_2829150_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2829191_2830820_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2830927_2831809_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2834921_2835296_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2835320_2835659_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2835702_2837337_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2837375_2838722_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2838829_2840251_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2840320_2840905_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2841007_2841958_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2842092_2843199_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2843209_2844307_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2844451_2845657_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2845663_2846185_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2846181_2846664_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2846669_2846921_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2846901_2847387_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2847522_2850984_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2851001_2851886_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2851895_2852327_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2852573_2853077_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2853154_2854555_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2854629_2855505_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2855501_2856509_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2856976_2857282_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2857372_2857963_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2858153_2859170_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	2862313	2929124	4082563	transposase,protease	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2862313_2863264_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2863362_2864313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2864309_2865104_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2865135_2865840_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2865914_2866715_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2866711_2867119_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2867115_2867757_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2867749_2869750_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2871010_2872342_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2872338_2873289_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2874995_2875262_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2875969_2876308_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2880861_2881464_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2881560_2882850_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2882907_2883639_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2883635_2884439_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2884435_2885524_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2885520_2886450_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2886598_2887744_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2887765_2888716_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2888733_2888892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2889046_2892868_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2893024_2893693_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2893697_2895371_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2895389_2896709_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2896713_2899029_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2899084_2901253_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2901249_2906430_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2906528_2906843_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2907070_2907316_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2907410_2907929_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2908028_2909234_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2909349_2910747_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2910863_2911442_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2911514_2912906_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2913073_2914024_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2914304_2914925_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2914921_2915335_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2915331_2916375_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2916430_2916619_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2916628_2917393_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2917483_2918140_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2918231_2918990_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2919015_2920617_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2920817_2921822_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2921922_2922186_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2922303_2923080_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2923670_2924621_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2927004_2928117_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2928173_2929124_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	2959510	2998699	4082563	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2959510_2960461_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2960478_2960628_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2960581_2961478_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2963755_2965981_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2966145_2967234_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2967190_2967844_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2967891_2968689_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2969220_2970171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2970251_2971400_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2971456_2972407_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2972505_2972811_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2972839_2973274_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2973275_2974520_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2974516_2975227_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2975241_2976153_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2976515_2976920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2976916_2977375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2977381_2978290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2978286_2979153_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2979139_2979967_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2979977_2981105_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2982182_2983421_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2983462_2984725_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2984731_2985484_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2985535_2985721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2985996_2986461_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2986492_2987152_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2987296_2989405_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2989401_2990352_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2990455_2991076_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2991179_2991920_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2993054_2994179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2994224_2994593_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994834_2995785_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2996820_2997363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2997560_2997731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2997748_2998699_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	3384197	3504442	4082563	tRNA,transposase	Acinetobacter_phage(20.0%)	99	NA	NA
WP_023995489.1|3384197_3385148_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3385552_3386197_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3386221_3386806_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3386906_3387524_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3387526_3389242_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3389238_3389547_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3389563_3390181_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3390225_3390528_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3390628_3391483_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3391670_3391895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3392064_3392337_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3392754_3393162_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3393531_3394326_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3394426_3395662_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3395730_3396747_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3396758_3398135_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3398131_3399328_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3399324_3400863_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3400859_3402119_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3404059_3405010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3405776_3406871_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3406863_3408198_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3408151_3408835_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3408860_3410024_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3410020_3411022_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3411021_3411894_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3411890_3412640_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3412636_3413428_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3413424_3414564_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3414839_3415625_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3415658_3416441_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3416444_3416834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3417973_3418837_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3418872_3419961_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3419957_3420908_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3421261_3424240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3425166_3426045_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3427009_3427960_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3429042_3429993_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3429989_3430457_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3430499_3431270_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3431290_3432091_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3432101_3433511_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3433605_3434391_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3434630_3435647_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3435754_3436147_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3436284_3436965_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3436969_3437941_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3438036_3438987_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3440491_3441193_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3441192_3442617_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3443686_3445027_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3445142_3446906_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3447017_3447896_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3448008_3448824_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3448827_3449079_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3449163_3450180_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3450510_3450732_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3453092_3454010_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3454507_3455716_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3455795_3457367_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3457484_3458420_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3458608_3459553_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3460120_3465838_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3465843_3466971_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3467026_3467653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3467924_3468941_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3469036_3469747_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3469743_3470733_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3470828_3472460_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3472462_3473200_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3473355_3474228_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3474577_3475717_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3475713_3476373_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3476444_3477077_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3477106_3477625_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3477635_3478745_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3478791_3479646_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3479647_3480550_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3481772_3482723_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3484479_3485469_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3485644_3486433_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3486429_3487461_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3487479_3488043_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3488098_3489619_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3489882_3490587_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3490594_3491323_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3491437_3491812_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3491854_3493144_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3493140_3494310_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3494306_3495146_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3495205_3496141_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3496153_3497104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3497202_3498165_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3498196_3498556_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3498680_3499583_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3499584_3501357_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3501391_3502168_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3503491_3504442_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP013867	Bordetella pertussis strain J365 chromosome, complete genome	4082563	3519380	3577453	4082563	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3519380_3520331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3520459_3521593_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3521636_3522542_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3522544_3524245_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3524241_3525162_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3525169_3526147_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3526205_3527240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3529214_3529451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3529577_3530441_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3530529_3531351_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3531430_3532168_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3532164_3533157_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3533309_3533933_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3533977_3535126_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3537449_3538400_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3538740_3539691_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3539789_3540740_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3541036_3541534_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3541576_3543352_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3543359_3544226_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3544232_3544967_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3546136_3546931_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3547220_3547811_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3547844_3549173_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3549247_3550393_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3550504_3551503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3551465_3551900_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3553416_3554301_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3554297_3555503_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3555499_3556360_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3556472_3558263_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3558303_3558948_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3558969_3559278_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3559443_3560730_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3562163_3563114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3565065_3566280_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3566385_3567375_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3567371_3567980_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3567992_3568622_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3568618_3569239_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3569270_3570062_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3570913_3571369_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3571387_3572314_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3572367_3573654_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3574584_3575457_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3575453_3576404_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3576502_3577453_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
