The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	0	59497	4162596	tRNA,transposase	Natrialba_phage(12.5%)	52	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003814410.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_005013747.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	70134	124171	4162596	tRNA,transposase	Planktothrix_phage(20.0%)	52	NA	NA
WP_005012808.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|84572_85745_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|86530_87763_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|102882_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|123220_124171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	137255	209776	4162596	tRNA,transposase	Bacillus_phage(16.67%)	58	NA	NA
WP_005012067.1|137255_138206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815155.1|138624_140133_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|140879_144842_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|144894_145677_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|145764_146988_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|146971_147904_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|147909_148722_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929647.1|150033_151005_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815135.1|151123_151906_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|152672_153653_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|153649_154378_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|154402_154834_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|154935_155811_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853237.1|155862_157062_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929652.1|157166_157628_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|157733_159131_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|159127_159805_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|159860_161171_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|161182_161881_-	phosphate regulon transcriptional regulator PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|162044_162821_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|162986_164009_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|164237_164873_+	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929658.1|164869_166432_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|166990_167941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|169384_170287_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|170264_170894_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|171176_172607_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|172640_173270_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|173318_174926_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|174950_175634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|175715_176192_-	bacterioferritin	NA	NA	NA	NA	NA
WP_005012067.1|176398_177349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|178464_178992_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|179083_179899_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|179959_180694_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|180731_182810_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|183059_183332_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|183433_184519_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|184522_186427_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_010929669.1|186423_190122_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|190182_190746_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|190753_191176_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|191203_191623_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|191651_192125_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|192224_192722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|192876_195147_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|195195_196428_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|196525_197476_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|197578_198214_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_010929674.1|198210_199104_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|199498_200599_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|200680_201055_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|201114_203979_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|204123_204864_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|204933_206145_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|206173_207142_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|207755_208706_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|208825_209776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	217708	280346	4162596	tRNA,transposase,protease	uncultured_Caudovirales_phage(22.22%)	52	NA	NA
WP_010929686.1|217708_218659_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|218757_219708_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|219732_220632_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|220786_221335_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|221373_222093_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|222164_225107_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033446404.1|225700_228496_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|228953_229886_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|229997_231347_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|231378_232104_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929695.1|232154_233006_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|233135_233822_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|233821_234466_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|234522_234798_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|234823_235120_+	YciI family protein	NA	NA	NA	NA	NA
WP_010929697.1|235165_235945_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_023853200.1|235950_236991_+	cyclase family protein	NA	NA	NA	NA	NA
WP_010929699.1|237095_237419_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_005013747.1|237575_238526_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|238624_239422_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|240371_240782_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|241803_242547_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|242590_243634_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|243804_245907_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|247317_248274_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|248292_248784_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|248780_250136_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|250136_250835_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|250831_251533_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|251785_252835_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|252940_253882_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|253878_255768_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|255854_256493_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|256635_258021_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|257951_258488_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|258639_260031_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|260047_261028_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|261163_262147_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|262211_263111_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|263217_264972_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|264979_266104_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|266117_267098_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|267828_268779_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|269338_269884_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|269967_271587_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|271602_272757_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|272770_272896_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|272892_274644_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|274640_276320_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|276382_276931_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|278073_278352_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|279395_280346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	393113	526136	4162596	integrase,transposase	Bacillus_virus(13.64%)	109	456121:456138	531643:531660
WP_005012067.1|393113_394064_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|394152_395067_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|395063_395723_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|395812_396736_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|396741_397197_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|397193_398297_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|398252_398525_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|398484_400104_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|400100_401159_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|401288_401783_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|401875_402853_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|403048_404254_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|404250_405762_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|405777_407091_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|407281_407461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|407870_408605_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|411049_412000_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|412131_412530_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|412940_413411_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|413499_413844_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|413943_415344_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|417132_417651_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|417761_418517_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929790.1|418712_419945_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|419937_420723_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|420789_421761_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|421771_422749_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|422874_424047_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|424073_425102_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|425167_426361_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|428142_429093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929794.1|429191_430097_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929795.1|430272_430476_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929796.1|430986_431427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929797.1|431456_432116_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248869.1|432201_433818_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929799.1|433838_435302_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929800.1|435332_438719_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929801.1|438860_439265_-	RidA family protein	NA	NA	NA	NA	NA
WP_010929802.1|439408_440395_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247316.1|440381_440663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929803.1|441408_442641_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929804.1|442640_443135_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929805.1|443266_444229_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929806.1|444206_445460_-	CoA transferase	NA	NA	NA	NA	NA
WP_005013747.1|445581_446532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|446630_447581_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|448135_448510_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|448584_449643_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|449666_450617_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|453498_454668_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|454768_456376_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
456121:456138	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|456422_458444_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|458472_458718_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|458731_459922_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|460117_461083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|461105_462245_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|462456_463419_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|463542_465567_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|465763_468007_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|468285_468744_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|469671_472293_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|472356_474984_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|475135_476200_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|476199_476970_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|476978_477812_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|477824_478604_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|478677_480111_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|480138_480897_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|480952_482803_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|482896_483373_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|483389_484310_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|484416_484917_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_010929826.1|485290_485983_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_005012067.1|486291_487242_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|487358_488426_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_010929828.1|488501_491630_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|492137_493103_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|493105_493777_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|493933_494893_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|494900_495563_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|495559_496510_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|498066_498912_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|498999_500163_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|500581_501553_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|501591_503019_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|503138_503930_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|504048_506502_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|506596_507706_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|507708_509118_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|509523_509658_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|509753_510125_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|510121_510394_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|510442_512134_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_102989980.1|512364_513315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929840.1|513772_514696_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814626.1|514704_515103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929841.1|515344_517315_+	type III secretion system effector BopC	NA	NA	NA	NA	NA
WP_010929843.1|518801_519791_+|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010926403.1|519787_519988_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929845.1|520100_520442_-	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_019247983.1|520452_521637_-	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929847.1|521673_522201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929848.1|522258_522906_-	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929849.1|522902_523889_-	recombinase RecT	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010926410.1|523892_524075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926411.1|524071_524449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929850.1|524682_525150_-	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010929851.1|525185_526136_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
531643:531660	attR	ACGGTGGCCAGCACGCTG	NA	NA	NA	NA
>prophage 6
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	655400	723715	4162596	tRNA,transposase	Acanthocystis_turfacea_Chlorella_virus(11.11%)	57	NA	NA
WP_005013747.1|655400_656351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|656449_657400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815668.1|657396_657804_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_019247835.1|657800_658469_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003815671.1|659087_660059_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815672.1|660165_661128_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929934.1|661246_662968_+	D-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_010929935.1|663011_664142_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929936.1|664155_665346_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929937.1|665526_666546_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929938.1|666678_667851_-	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_003815682.1|667843_668518_-	DUF1028 domain-containing protein	NA	NA	NA	NA	NA
WP_010929939.1|668528_668957_-	RidA family protein	NA	NA	NA	NA	NA
WP_003815690.1|668987_670262_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929940.1|670626_671610_+	oxidoreductase	NA	NA	NA	NA	NA
WP_010929941.1|671693_672638_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929942.1|672785_674927_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929943.1|674926_675706_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815697.1|676104_676998_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929944.1|677061_678081_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929945.1|678137_679118_+	NAD(P)-dependent oxidoreductase	NA	M1IDV7	Acanthocystis_turfacea_Chlorella_virus	29.5	7.6e-11
WP_010929946.1|679315_681148_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	48.1	4.3e-156
WP_010929947.1|681297_681786_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929948.1|681807_682992_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929949.1|683021_685139_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929950.1|685396_687199_+	DNA alkylation response protein	NA	NA	NA	NA	NA
WP_010929951.1|687280_688267_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929952.1|688318_690508_+	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929953.1|690504_691302_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929954.1|691298_692135_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929955.1|692154_694530_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|694628_695579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|695677_696628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|697350_698625_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|698711_699794_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|699804_700617_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|700653_700980_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|700984_701545_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|701785_702778_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|702796_703792_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|703807_705184_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|705176_707558_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|707574_707964_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|708090_708321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|708425_709376_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|709474_710425_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|710421_711294_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|712224_713511_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|713564_714491_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|714509_714965_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|715816_716608_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|716639_717260_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|717256_717886_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|717898_718507_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|718503_719493_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|719598_720813_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|722764_723715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	734375	814221	4162596	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_014905478.1|734375_735374_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|735533_736406_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|736746_736965_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_010929975.1|737004_738384_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738425_739823_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|739862_741515_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741518_742403_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742402_743344_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743422_745042_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745208_746024_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746091_746661_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|746661_747612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748266_749364_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749397_750663_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_005012067.1|750820_751771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752014_752605_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|752620_755065_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755184_756156_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756287_756812_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|756771_757722_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|757943_760139_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|760211_760640_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|760741_761692_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807452.1|761807_762251_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010925762.1|762313_763108_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807457.1|763273_764410_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_003807459.1|764480_765614_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807460.1|765763_766024_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807462.1|766057_766369_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_010929987.1|766793_767942_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010929988.1|768056_769022_+	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929989.1|769290_770157_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929993.1|777888_779370_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929994.1|779385_779943_-	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_153302771.1|780012_780321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929995.1|780421_785542_+	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_010929996.1|785619_787758_+	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929997.1|787754_789077_+	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929998.1|789078_790503_+	TolC family protein	NA	NA	NA	NA	NA
WP_010929999.1|790593_791502_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930000.1|791566_792481_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807497.1|793318_794002_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_020699739.1|794033_794762_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_010930002.1|794791_795652_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818983.1|795659_796226_-	membrane protein	NA	NA	NA	NA	NA
WP_010930003.1|796314_797271_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930004.1|797315_798068_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930005.1|798064_799810_-	acetolactate synthase	NA	NA	NA	NA	NA
WP_167550047.1|799806_799980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023999677.1|801973_802696_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818991.1|802840_803848_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_010930009.1|803888_805421_-	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_004566042.1|805417_806536_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930010.1|806532_807315_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818996.1|807326_808190_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930011.1|808208_809306_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|809374_810301_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930013.1|810335_812030_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023998705.1|812229_813123_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|813270_814221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	869777	923908	4162596	holin,transposase	Ostreococcus_lucimarinus_virus(25.0%)	41	NA	NA
WP_005012067.1|869777_870728_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|871891_873607_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|873617_874109_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|874181_875198_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|875365_876145_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|876163_876691_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|876984_877254_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|877344_879504_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|879624_880344_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|880340_881291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|881431_882649_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|882642_883254_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|883887_884865_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|885008_885755_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|885776_886223_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|887010_889242_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|889264_890065_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|890346_891579_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|891689_892679_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|892709_894098_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|895696_896680_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929632.1|896876_897893_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813987.1|898089_898914_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_076879542.1|898991_899915_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_010930021.1|900085_901237_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010930022.1|901240_902272_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930023.1|902400_903372_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|903396_905481_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813981.1|905547_906540_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930024.1|906648_907983_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010930025.1|908008_910021_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_023853163.1|910017_912066_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930027.1|912169_912817_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003813974.1|912957_913452_+	azurin	NA	NA	NA	NA	NA
WP_010926969.1|913495_914167_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930029.1|914181_915675_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930030.1|915671_918785_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930031.1|918797_919904_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930032.1|920027_920696_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|920916_921867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813960.1|921949_923908_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
>prophage 9
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	1077487	1147761	4162596	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_010930525.1|1077487_1078504_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1080012_1080585_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1080644_1081376_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1081427_1082345_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1083152_1086332_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010930122.1|1086328_1087711_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1087780_1088032_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1088177_1088792_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1088978_1091093_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1091167_1092019_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1092015_1092642_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1092638_1094393_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1094685_1097391_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1097403_1099065_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1099077_1100868_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1101089_1102265_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_005012808.1|1102307_1103258_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1103356_1104097_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1104291_1106328_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1106345_1107356_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1107473_1108667_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1108696_1109470_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1109466_1110657_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1110682_1111621_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1111617_1113966_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1114120_1114762_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1114865_1115999_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1116091_1116244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1116275_1116824_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1116842_1117328_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1117505_1118444_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1118446_1118764_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1118809_1119754_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930140.1|1119774_1121250_-	inorganic phosphate transporter	NA	NA	NA	NA	NA
WP_010930141.1|1121434_1122085_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1122138_1122474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1122470_1123331_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1123347_1123629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1123702_1123966_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1124209_1125160_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1125458_1126196_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1126631_1126955_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1126989_1127550_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1127670_1128546_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1128558_1129506_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1129607_1129901_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1129927_1131985_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1131999_1132500_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1132573_1134280_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1135143_1136196_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1136248_1136638_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1136646_1137279_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010930147.1|1137378_1138395_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1139183_1140233_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1140229_1141873_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1141869_1142757_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1142897_1143371_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1143360_1144383_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1144379_1145807_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930153.1|1146744_1147761_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	1151513	1218703	4162596	holin,tRNA,transposase,protease	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012808.1|1151513_1152464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930155.1|1152562_1153699_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1153695_1154769_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1154926_1156363_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1156453_1157095_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1157430_1158447_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930159.1|1158779_1161512_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1161578_1163000_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1163263_1163980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1164064_1164382_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1164422_1164836_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1164837_1165197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1165239_1166784_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1166867_1167698_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1167732_1168887_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1168929_1169802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930166.1|1169918_1172207_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1173413_1173878_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1173904_1174855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1175222_1175999_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1176043_1176901_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1176922_1177939_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_010930170.1|1178073_1179114_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	39.9	3.0e-50
WP_010930171.1|1179308_1181390_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1181625_1183119_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1183349_1184144_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1184364_1185723_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1185719_1186562_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1186580_1188467_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1188408_1188660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1188704_1189337_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1189355_1189958_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_077070120.1|1190109_1191060_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1191158_1192109_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1192689_1193397_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1193755_1194742_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1194881_1195895_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_010930179.1|1195891_1196842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1196954_1197413_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1197449_1198763_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1198780_1199152_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_010930181.1|1199148_1200612_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1200752_1201481_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1201462_1204312_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1204524_1205475_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930194.1|1206173_1209404_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|1209685_1210513_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|1210546_1211242_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|1211234_1212515_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|1212524_1213502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|1213483_1215184_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|1215286_1216390_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|1216420_1217176_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|1217182_1218703_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 11
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	1226330	1286166	4162596	tRNA,transposase	Erysipelothrix_phage(50.0%)	43	NA	NA
WP_005012067.1|1226330_1227281_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|1227415_1231342_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023995083.1|1234174_1235038_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_019248398.1|1235037_1236006_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1236075_1236921_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1236988_1237543_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1237589_1238540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1238638_1239262_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1239440_1241723_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1241877_1244574_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1244699_1245188_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930203.1|1245223_1247272_+	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
WP_003813631.1|1247596_1250467_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1250512_1251727_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1251956_1253384_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1253481_1254573_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1254585_1255344_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1255431_1256334_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1256330_1257281_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1257410_1258394_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1258448_1259171_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930208.1|1259638_1260589_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930209.1|1261310_1261844_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003813612.1|1261836_1262799_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003813609.1|1262892_1265370_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813607.1|1265486_1265795_+	DUF3649 domain-containing protein	NA	NA	NA	NA	NA
WP_010930210.1|1267439_1267766_+	DUF3325 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1267914_1268865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930211.1|1268874_1270230_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1270310_1272686_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1272850_1274926_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1274987_1275788_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1275889_1276852_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1276839_1277595_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1277702_1279340_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1279407_1280145_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1280247_1280823_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1280995_1281532_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1281534_1281879_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1281894_1282740_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1282778_1284158_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1284235_1285117_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1285215_1286166_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	1377244	1442552	4162596	tRNA,transposase	Bacillus_virus(18.18%)	57	NA	NA
WP_003810552.1|1377244_1377979_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003818637.1|1377995_1379816_+	translational GTPase TypA	NA	NA	NA	NA	NA
WP_010928248.1|1379886_1380612_-	toxin	NA	NA	NA	NA	NA
WP_003818640.1|1380608_1381013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930272.1|1381164_1381794_-	TIGR00730 family Rossman fold protein	NA	F4YCQ1	Synechococcus_phage	27.1	6.6e-08
WP_010930273.1|1381846_1384561_+	DNA polymerase I	NA	B6V2J7	Bacillus_phage	30.7	5.0e-68
WP_010930274.1|1384671_1385508_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010930275.1|1385562_1386351_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010930276.1|1386384_1388046_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_010930277.1|1388213_1389605_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_003810571.1|1389742_1390402_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA	NA
WP_050865593.1|1390437_1393263_-	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA	NA
WP_003810577.1|1397036_1398293_-	transcription termination factor Rho	NA	NA	NA	NA	NA
WP_023852918.1|1398405_1398732_-	thioredoxin TrxA	NA	A0A1J0GW78	Streptomyces_phage	46.2	1.3e-18
WP_010930279.1|1399024_1400986_+	type IIA DNA topoisomerase subunit B	NA	G3M9Z3	Bacillus_virus	35.5	4.2e-93
WP_010930280.1|1400985_1401594_+	YcxB family protein	NA	NA	NA	NA	NA
WP_010930281.1|1401611_1403927_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.5	4.5e-78
WP_010930282.1|1403929_1405144_+	DUF418 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1405140_1406091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1406859_1407498_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1408387_1408834_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1408915_1409617_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1409617_1410385_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1410381_1411620_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1411619_1412546_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1412648_1413764_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1413779_1414730_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1415083_1415665_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1415661_1416495_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1416705_1418019_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1418195_1419077_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1419096_1419948_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1420000_1421089_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1421199_1422327_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1422561_1423173_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_077069213.1|1423271_1424222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1424320_1425271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|1425369_1426320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1426541_1426919_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1427066_1427564_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1427560_1428088_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1428221_1429037_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1429049_1430231_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1430278_1431172_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1431298_1431769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1431894_1432722_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1432750_1433527_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1433523_1433799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1433813_1434278_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1434289_1434991_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1435100_1435601_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1435683_1436862_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1438489_1438825_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1439012_1440461_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1440518_1440863_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1440969_1441509_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1441601_1442552_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	1579445	1638716	4162596	tRNA,transposase	Bacillus_phage(25.0%)	54	NA	NA
WP_005012067.1|1579445_1580396_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1580513_1581440_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1581505_1582663_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1582643_1583111_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_003811752.1|1583176_1583611_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1583600_1583951_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1584147_1585302_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1585298_1586471_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1586518_1587412_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1587457_1587895_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1587954_1588644_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1588653_1589604_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1589702_1590653_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930364.1|1590751_1591714_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_023852833.1|1591940_1593095_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930366.1|1593105_1596348_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1597369_1598014_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1598024_1598924_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1598971_1600057_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1600053_1601748_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_005012808.1|1601926_1602877_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247209.1|1603018_1603321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247210.1|1603336_1604389_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003820487.1|1604430_1605492_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_010930369.1|1605525_1606362_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812685.1|1606371_1606914_-	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930370.1|1606927_1608220_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010930371.1|1608216_1608810_-	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_004567450.1|1608962_1610060_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_003820494.1|1610066_1610627_+	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_010930372.1|1610623_1611304_+	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_010930373.1|1611327_1613418_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930374.1|1613414_1614044_+	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_023853518.1|1614195_1614405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247523.1|1614419_1617389_+	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_003812666.1|1618023_1618257_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930376.1|1618269_1619427_+	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_004567447.1|1619449_1619824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930377.1|1619857_1620973_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930378.1|1621872_1622577_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_004567445.1|1622573_1623392_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930379.1|1623675_1625079_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_010930380.1|1625093_1625744_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930381.1|1625825_1626902_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930382.1|1627088_1628219_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853502.1|1628269_1629973_+	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930384.1|1629976_1630789_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930385.1|1630933_1632028_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930386.1|1632239_1632869_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930387.1|1632871_1634539_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930388.1|1634553_1635210_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_076879548.1|1635689_1636640_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1636671_1637769_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1637765_1638716_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	1680565	1748648	4162596	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1680565_1681054_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_010930417.1|1681171_1681750_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1681855_1682224_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1682322_1683273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1683279_1684392_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1685078_1686281_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1686316_1686463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1686484_1689145_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1689157_1692562_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1693228_1695454_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1695500_1695827_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1695877_1696486_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1696584_1697535_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1697604_1698369_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1698365_1698965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1699068_1699920_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1699979_1700606_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1700602_1701553_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1701651_1702764_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1702753_1703755_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1703860_1705372_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1705368_1706673_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1706784_1707345_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1707612_1708167_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1708622_1708838_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1709092_1711690_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1711686_1712874_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1713530_1714145_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1714233_1715361_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_003809954.1|1715372_1716278_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1717170_1718121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1718302_1719055_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1719123_1719783_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1719779_1720508_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1720520_1722800_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1722824_1723028_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1723069_1723702_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1723837_1724755_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1724751_1725465_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1725702_1726473_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1726477_1727077_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1727321_1728812_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1728870_1729155_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1729292_1729448_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1729720_1730647_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1730783_1731524_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1731690_1733067_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1733248_1734154_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1735805_1737608_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1737734_1738376_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_010929584.1|1738474_1739425_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1739446_1740667_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1740852_1742265_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1742328_1743396_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1743395_1744883_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1744892_1745837_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1745996_1746695_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1746772_1747678_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1747697_1748648_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	1784603	1840194	4162596	transposase	Tetraselmis_virus(25.0%)	47	NA	NA
WP_005012067.1|1784603_1785554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|1786106_1787732_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|1787781_1788816_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|1788818_1790165_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|1790161_1791676_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1791666_1792677_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|1793150_1794092_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|1794100_1795069_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|1796608_1797577_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|1797754_1798744_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|1798790_1799549_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|1799738_1800476_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|1800574_1801525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|1801709_1802492_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|1802485_1803187_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|1803426_1804029_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1805355_1806306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930485.1|1806302_1807859_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|1807851_1808625_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|1808683_1809634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1809738_1810686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1810739_1812554_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1812546_1813221_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1813350_1816425_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_010930491.1|1816438_1816738_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1817052_1817676_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1817919_1818789_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1818766_1819711_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1819796_1820723_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1820835_1821615_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1821605_1822802_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1822832_1823783_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1824004_1824694_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1824758_1825514_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1825565_1826558_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1826567_1827521_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1827636_1828599_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1830000_1830429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1830425_1831376_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1831669_1832407_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1832830_1834018_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1834021_1834402_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1836121_1837093_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1837106_1837820_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1837824_1838742_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1838848_1839145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1839243_1840194_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	1847490	1966839	4162596	tRNA,transposase,protease	Moraxella_phage(10.71%)	106	NA	NA
WP_005013747.1|1847490_1848441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247780.1|1848484_1849027_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930513.1|1849124_1849973_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_004568494.1|1849965_1850472_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930515.1|1850468_1851470_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930516.1|1851482_1852277_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930517.1|1852325_1854227_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003810992.1|1854223_1854847_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_003816541.1|1854973_1856098_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930518.1|1856478_1858083_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_010930519.1|1858238_1859015_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930520.1|1859099_1860098_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930521.1|1860094_1860868_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930522.1|1861852_1862803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1862840_1863428_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1863445_1863829_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1865188_1866481_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1866615_1867656_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010930525.1|1867753_1868770_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1869037_1869685_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1869810_1870569_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1870553_1871333_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1871350_1872235_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_004568488.1|1872231_1873011_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1873115_1873715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1874003_1874756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1874874_1876275_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1876298_1876697_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1876872_1877073_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1877211_1877940_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1878073_1879489_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1879492_1880356_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1880368_1881118_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1881300_1883316_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1883297_1883966_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1884740_1885691_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1885839_1886178_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1886235_1886397_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1886428_1886629_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1886894_1889468_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1889538_1892088_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1894638_1895127_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1895218_1896370_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1896423_1897245_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1897283_1898513_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1898641_1899082_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1899192_1900143_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1900139_1900613_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|1900774_1901713_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|1901714_1902923_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|1903027_1903534_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|1903536_1906398_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1906387_1907353_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1907412_1909407_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1909505_1910456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041337087.1|1910554_1911505_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930545.1|1911501_1911876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812548.1|1912137_1913346_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_003812546.1|1913342_1915643_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_010926400.1|1915695_1918308_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010930546.1|1918667_1920593_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010930547.1|1920589_1921486_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|1921492_1922632_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_003812536.1|1922631_1923453_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930549.1|1925023_1925353_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010930550.1|1925735_1926992_+	autotransporter Phg	NA	NA	NA	NA	NA
WP_003812526.1|1927066_1927348_+	membrane protein	NA	NA	NA	NA	NA
WP_003812524.1|1927389_1927710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930551.1|1928016_1928220_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_010930552.1|1928303_1928870_+	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930553.1|1929215_1929416_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_010930554.1|1929527_1930088_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930555.1|1930284_1931595_+	trigger factor	NA	NA	NA	NA	NA
WP_003812508.1|1931597_1932251_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930556.1|1932355_1933660_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_010930557.1|1933848_1936302_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_019247936.1|1936425_1937376_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930559.1|1937603_1938827_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930560.1|1938892_1939864_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930561.1|1939930_1940332_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_015063637.1|1940345_1941149_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003812491.1|1941145_1941577_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010930563.1|1941573_1942731_+	thiolase	NA	NA	NA	NA	NA
WP_010930564.1|1942752_1943529_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930565.1|1945741_1946410_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003812478.1|1946402_1947044_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_019248063.1|1947078_1947810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247934.1|1947827_1948040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1948610_1949561_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|1951118_1951769_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_010930567.1|1951897_1953100_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|1953177_1955214_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|1955466_1955958_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|1956173_1956686_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|1956703_1957915_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|1957952_1958363_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|1958364_1958688_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|1958690_1959203_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|1959332_1961195_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|1961204_1961546_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|1961545_1961740_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|1961864_1962758_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|1962754_1963705_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1963829_1964639_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005012067.1|1964839_1965790_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929686.1|1965888_1966839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	2277256	2328893	4162596	transposase	Erysipelothrix_phage(33.33%)	45	NA	NA
WP_010930730.1|2277256_2278207_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2279077_2279950_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2280027_2281167_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2281525_2282782_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2282787_2283315_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2283319_2284138_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2284137_2284860_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2284881_2285196_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2285213_2286362_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2286392_2287268_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2287264_2288584_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930738.1|2288656_2289853_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2289863_2291351_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2293945_2294845_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2294982_2295948_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2296046_2296997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|2297218_2298169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2298165_2298468_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2298627_2299032_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2299024_2300251_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2300247_2300694_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2300763_2301546_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2301587_2303093_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2303378_2304212_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2305649_2306471_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2306489_2307344_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2307347_2308319_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2309003_2309180_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812172.1|2310704_2311001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930747.1|2311175_2312528_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.4	8.5e-45
WP_010930153.1|2312670_2313687_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2315666_2316680_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2316766_2317672_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2317828_2318173_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2318330_2318789_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2318802_2321019_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2321015_2322077_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2322105_2323080_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2323031_2323850_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2323862_2324471_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2324645_2325041_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2325059_2326499_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2326527_2326875_+	GFA family protein	NA	NA	NA	NA	NA
WP_005012067.1|2326893_2327844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2327942_2328893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	2357055	2407809	4162596	tRNA,transposase,protease	Staphylococcus_phage(11.11%)	46	NA	NA
WP_005012067.1|2357055_2358006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|2358172_2359147_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2359143_2359287_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2360908_2361571_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2361573_2361750_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2361746_2362685_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2362776_2364267_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2364352_2364505_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2364518_2364758_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2364853_2365597_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930780.1|2365629_2366130_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_170954295.1|2366192_2367152_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_003810400.1|2367148_2367910_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2367925_2369011_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2369210_2370161_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2370120_2370534_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2370818_2371118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2371527_2373810_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2374275_2374470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2374495_2376526_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2376545_2376758_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2377035_2377575_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2377688_2378984_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2379060_2380218_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2380401_2381301_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2381319_2382624_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2382589_2383696_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2383783_2384020_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2384158_2385229_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2385232_2386588_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2386614_2387775_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2387777_2388416_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2388417_2389704_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2389762_2391058_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2391064_2391571_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2391567_2392716_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2392743_2393169_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2393491_2396374_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2396466_2397222_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2397987_2399337_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_005012067.1|2399435_2400386_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2403126_2404416_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2404534_2404972_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2405015_2406224_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2406370_2406835_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930800.1|2406858_2407809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	2646124	2710339	4162596	tRNA,transposase,protease	Salmonella_phage(16.67%)	60	NA	NA
WP_004566381.1|2646124_2647612_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2647649_2648708_-	MucB/RseB C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_023853242.1|2648707_2649208_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2649220_2649820_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2649816_2650317_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2650318_2651548_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2651737_2651977_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2652159_2652912_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2652913_2653849_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2653930_2654917_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2654916_2655975_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2656031_2656214_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2656265_2656859_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2656967_2657567_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2657563_2658274_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2658275_2659103_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2660919_2662161_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2662172_2662946_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2662972_2663923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2664021_2664804_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2664892_2666119_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2666844_2668230_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2668248_2668854_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2668850_2670707_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2670703_2671504_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2671518_2672712_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2672779_2673754_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2673876_2675100_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2675210_2677415_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2677709_2678369_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2678376_2678583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2678921_2679677_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2679692_2679854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2679947_2680463_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2680735_2681053_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2680997_2681642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2681767_2683123_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2683169_2684510_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2684611_2685244_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2685243_2687604_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2687645_2688605_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2688591_2689278_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2689274_2689607_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929577.1|2689722_2690673_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2690669_2692736_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2692735_2693008_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2693702_2693792_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2693791_2695576_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2695599_2697765_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930951.1|2697775_2698375_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2701195_2701891_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_010930730.1|2701899_2702850_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015028.1|2702948_2704190_-	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_003814057.1|2704339_2705320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814059.1|2705518_2706775_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814061.1|2706977_2707403_+	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814063.1|2707444_2707807_-	cytochrome c	NA	NA	NA	NA	NA
WP_003814065.1|2707819_2708173_-	cytochrome c	NA	NA	NA	NA	NA
WP_005013747.1|2708339_2709290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2709388_2710339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	2790040	2856756	4162596	tRNA,transposase	Salmonella_phage(22.22%)	59	NA	NA
WP_010929591.1|2790040_2790991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2791101_2791284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2791383_2791980_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2792163_2793255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2793754_2794165_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2794223_2794565_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2794570_2796988_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2797000_2798023_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2798097_2798457_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2798472_2798670_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2799005_2799956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2800150_2800600_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|2800596_2801547_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2801657_2803106_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2803220_2803502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2803605_2804556_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2804800_2805514_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2805636_2805864_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2806158_2806797_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2806905_2807940_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010931012.1|2809301_2809826_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2809829_2810099_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2810297_2811359_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2811442_2813077_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2813078_2813882_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2813910_2814870_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2814873_2816388_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2816424_2817429_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_019248146.1|2817436_2817685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931018.1|2817859_2818330_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2818365_2818977_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2819007_2819631_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2819711_2821244_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2821278_2822520_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2822563_2823595_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2823591_2824761_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2824754_2825435_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2825596_2826439_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2826601_2827573_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2827744_2828623_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2828645_2829716_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2829756_2830707_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931030.1|2830999_2832358_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931031.1|2832469_2834197_+	sulfate permease	NA	NA	NA	NA	NA
WP_010931032.1|2835469_2835904_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2835896_2837132_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2837139_2837934_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2837930_2838734_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2838760_2839738_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2839766_2841338_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2841348_2842170_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2843894_2845325_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2845337_2846027_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2846122_2847463_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2847464_2847722_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2848075_2849668_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2849764_2851225_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2851447_2852059_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_005013747.1|2855805_2856756_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	2885123	2941830	4162596	tRNA,transposase	Moraxella_phage(20.0%)	42	NA	NA
WP_003810909.1|2885123_2885540_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2885650_2886283_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2886311_2886755_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2886776_2887868_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2887922_2888723_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2888858_2889479_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2889618_2890092_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2891231_2892182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2892178_2899840_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2900080_2904127_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2904439_2905021_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2905017_2906316_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2906395_2907424_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_005013747.1|2907684_2908635_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2908733_2909684_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2909680_2910631_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2910947_2911553_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2911606_2912920_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2912994_2913465_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2913464_2914253_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2914263_2915916_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2916003_2916954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2918115_2918622_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2918618_2919383_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2919398_2919683_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2919747_2920737_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2920908_2921838_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2921809_2922496_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2922529_2923075_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2923119_2924385_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2924381_2925284_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2926465_2927410_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2927504_2929022_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2929063_2930692_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2930799_2931681_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2934793_2935168_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2935192_2935531_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2935574_2937209_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2937247_2938594_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2938701_2940123_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2940192_2940777_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2940879_2941830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	2958025	3012845	4162596	transposase,protease	uncultured_Mediterranean_phage(25.0%)	36	NA	NA
WP_010930525.1|2958025_2959042_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2959233_2961570_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2961652_2962087_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931099.1|2963131_2963926_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2963957_2964662_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2964736_2965537_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2965533_2965941_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2965937_2966579_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2966571_2968572_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2969832_2971164_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2971160_2972111_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2973817_2974084_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2974791_2975130_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2979682_2980285_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2980381_2981671_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2981728_2982460_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2982456_2983260_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2983256_2984345_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2984341_2985271_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2985419_2986565_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2986586_2987537_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2987867_2991689_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2991845_2992514_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931112.1|2992518_2994192_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2994210_2995530_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2995534_2997850_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2997905_3000074_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|3000070_3005260_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|3005349_3005664_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|3005891_3006137_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|3006231_3006750_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|3006849_3008055_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|3008170_3009568_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|3009684_3010263_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|3010335_3011727_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931121.1|3011894_3012845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	3058331	3100972	4162596	transposase	Planktothrix_phage(33.33%)	37	NA	NA
WP_005012067.1|3058331_3059282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|3059402_3060299_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|3062576_3064802_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|3064966_3066055_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|3066011_3066665_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|3066712_3067510_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|3068041_3068992_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931145.1|3069066_3070221_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_003814535.1|3071325_3071631_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|3071659_3072094_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|3072095_3073340_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|3073336_3074047_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|3074061_3074973_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|3075335_3075740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|3075736_3076195_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|3076201_3077110_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|3077106_3077973_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|3077959_3078787_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|3078797_3079925_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|3081002_3082241_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|3082282_3083545_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3083551_3084304_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3084355_3084541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3084816_3085281_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|3085312_3085972_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3086116_3088225_+	AsmA family protein	NA	NA	NA	NA	NA
WP_010931155.1|3088226_3088847_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|3088938_3089691_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3090825_3091950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3091995_3092364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3092605_3093556_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3094591_3095134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930176.1|3095519_3096470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|3096466_3097432_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3097501_3098338_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3098850_3099960_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3100021_3100972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	3205879	3269714	4162596	tRNA,transposase,protease	Pseudomonas_phage(30.0%)	56	NA	NA
WP_005015810.1|3205879_3206830_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3206975_3208100_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3208305_3208869_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3209863_3210346_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3210503_3211751_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3211971_3212628_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3212663_3213893_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_005012067.1|3214160_3215111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3215202_3216618_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3216623_3217760_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3217829_3218201_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3218288_3219035_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3219071_3220136_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3220324_3220717_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3220726_3221155_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3221450_3222548_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3222889_3224254_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|3224312_3224864_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|3224877_3225552_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|3226808_3227618_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|3227620_3228457_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|3228471_3229164_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|3229175_3229565_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|3229670_3231059_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|3231175_3232672_-	membrane protein	NA	NA	NA	NA	NA
WP_010931230.1|3232968_3233643_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3233741_3234692_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931231.1|3234688_3237148_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814917.1|3237244_3238690_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|3238693_3239881_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|3239949_3240459_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|3240660_3241113_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_192855352.1|3241085_3241652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247415.1|3241674_3244737_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|3245042_3247970_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|3247991_3249188_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|3249505_3250033_+	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_010931237.1|3250171_3250747_+	YggT family protein	NA	NA	NA	NA	NA
WP_010931238.1|3250754_3252218_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|3252228_3253356_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_003814941.1|3253485_3254613_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|3254638_3254878_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|3255158_3255662_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|3255834_3256776_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|3256787_3257885_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|3258850_3260197_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|3260206_3260656_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|3260745_3261180_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|3261258_3261807_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|3261889_3263260_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|3263270_3263864_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931245.1|3263935_3265819_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|3265856_3266756_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|3266752_3267616_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3267714_3268665_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|3268763_3269714_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	3450770	3505560	4162596	transposase	Staphylococcus_phage(33.33%)	49	NA	NA
WP_010929956.1|3450770_3451721_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3452125_3452770_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3452794_3453379_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3453479_3454097_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3454099_3455815_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3455811_3456120_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3456136_3456754_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3456798_3457101_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3457201_3458056_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3458243_3458468_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3458637_3458910_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3459327_3459735_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3460104_3460899_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3460999_3462235_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3462303_3463320_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3463331_3464708_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3464704_3465901_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3465897_3467436_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3467432_3468692_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_010929591.1|3470632_3471583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069004.1|3471681_3472632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3473398_3474493_-	CoA transferase	NA	NA	NA	NA	NA
WP_010931345.1|3474485_3475820_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3475773_3476457_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3476482_3477646_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3477642_3478644_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3478643_3479516_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3479512_3480262_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3480258_3481050_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3481046_3482186_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3482461_3483247_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3483280_3484063_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3484066_3484456_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3485595_3486459_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3486494_3487583_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3487579_3488530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3488883_3491862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3492788_3493667_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3495615_3496566_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3496562_3497030_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3497072_3497843_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3497863_3498664_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3498674_3500084_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3500178_3500964_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930525.1|3501203_3502220_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3502327_3502720_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3502857_3503538_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3503542_3504514_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931359.1|3504609_3505560_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	3511714	3571046	4162596	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3511714_3513478_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3513589_3514468_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3514580_3515396_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3515399_3515651_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010931363.1|3515735_3516752_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3517082_3517304_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3519664_3520582_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3521079_3522288_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3522367_3523939_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3524056_3524992_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3525180_3526125_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3526692_3532410_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3532415_3533543_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3533598_3534225_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010929632.1|3534496_3535513_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3535643_3536354_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3536350_3537340_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3537435_3539067_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3539069_3539807_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3539962_3540835_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3541103_3542324_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3542320_3542980_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3543051_3543684_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3543713_3544232_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3544242_3545352_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3545398_3546253_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3546254_3547157_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3548379_3549330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3551083_3552073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3552069_3552228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3552248_3553037_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3553033_3554065_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3554083_3554647_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3554702_3556223_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3556486_3557191_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3557198_3557936_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3558041_3558416_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3558458_3559748_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3559744_3560914_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3560910_3561750_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3561809_3562745_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3562757_3563708_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3563806_3564769_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3564800_3565160_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3565284_3566187_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3566188_3567961_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3567995_3568772_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005012808.1|3570095_3571046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	3585984	3645768	4162596	tRNA,transposase	Planktothrix_phage(50.0%)	49	NA	NA
WP_005012808.1|3585984_3586935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3587063_3588197_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3588240_3589146_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3589148_3590849_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3590845_3591766_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3591773_3592751_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3592809_3593844_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3595818_3596055_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3596181_3597045_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3597133_3597955_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3598034_3598772_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3598768_3599761_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3599874_3600537_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3600581_3601730_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3604053_3605004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931401.1|3605344_3606295_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3606393_3607344_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3607442_3608393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3608689_3609187_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3609229_3611005_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3611012_3611879_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3611885_3612620_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3613789_3614584_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3614873_3615464_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3615497_3616826_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3616900_3618046_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3618157_3619108_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3619839_3620217_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3620201_3620903_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3621046_3621739_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3621738_3622842_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3622951_3625324_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3625320_3626880_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3626904_3627702_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3627733_3628879_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3628983_3630426_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3630428_3631658_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3633795_3634746_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3635875_3636433_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3636408_3636759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3636927_3637722_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3637718_3638768_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3638767_3639457_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3639543_3640041_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3640072_3641389_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814643.1|3642415_3642874_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3642873_3643554_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3643556_3643985_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3644037_3645768_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
>prophage 29
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	3651934	3699037	4162596	tail,terminase,tRNA,protease,transposase	uncultured_Caudovirales_phage(21.05%)	50	NA	NA
WP_010931429.1|3651934_3655891_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3655883_3656273_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3656269_3656803_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3656870_3657230_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3657239_3659852_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3659877_3660168_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3660185_3660515_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3660524_3661043_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3661297_3661798_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3661805_3662228_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3662224_3662623_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3662619_3663015_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3663014_3663215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3663216_3663699_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3663761_3664013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3664687_3665638_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3667115_3667718_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3667840_3668083_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3668088_3669144_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3669172_3670591_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3670593_3671871_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3671857_3672343_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3672982_3673933_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3674189_3674879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3674871_3675123_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3675677_3676289_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3676360_3676567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3676818_3677769_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|3677867_3678668_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|3678729_3679113_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|3679124_3680558_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|3680764_3681094_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|3681096_3681846_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|3682028_3682949_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|3682995_3683208_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|3683230_3683653_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|3683669_3684770_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|3684866_3686384_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|3686459_3687299_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|3687320_3688202_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|3688283_3689378_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|3689671_3690622_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|3690696_3691638_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3691736_3692687_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814209.1|3692770_3693130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931461.1|3693511_3694549_-	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_010931462.1|3694865_3696206_+	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931463.1|3696215_3696668_-	membrane protein	NA	NA	NA	NA	NA
WP_003814217.1|3696764_3697946_+	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_023995141.1|3698011_3699037_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
>prophage 30
NZ_CP019869	Bordetella pertussis strain J042 chromosome, complete genome	4162596	3765783	3806690	4162596	transposase	uncultured_virus(25.0%)	40	NA	NA
WP_005013747.1|3765783_3766734_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931499.1|3767126_3768134_-	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003808594.1|3768282_3769110_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931500.1|3769115_3769913_-	HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_010931501.1|3770058_3771234_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	M4QPK3	Synechococcus_phage	40.3	4.5e-34
WP_010931502.1|3771247_3771769_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2I2L4Y7	Orpheovirus	34.5	1.8e-11
WP_003808599.1|3771776_3772241_+	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_010931503.1|3772280_3773297_+	thiamine-phosphate kinase	NA	NA	NA	NA	NA
WP_019247451.1|3773293_3773836_+	phosphatidylglycerophosphatase A	NA	NA	NA	NA	NA
WP_003808604.1|3773832_3774399_+	CinA family protein	NA	B5TK85	Pseudomonas_phage	40.5	3.4e-19
WP_003808606.1|3774536_3775358_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA	NA
WP_010931505.1|3775365_3776685_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003808610.1|3776735_3777134_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_003808614.1|3777222_3778113_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_010931506.1|3778414_3781447_+	serum resistance autotransporter BrkA	NA	NA	NA	NA	NA
WP_010931507.1|3781550_3783194_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	59.7	3.9e-169
WP_003808621.1|3783226_3783514_-	co-chaperone GroES	NA	A0A221S4A8	uncultured_virus	52.1	1.2e-20
WP_010926000.1|3783847_3784477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003808629.1|3784473_3785175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931508.1|3785223_3785859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931509.1|3785902_3787612_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	27.4	2.7e-27
WP_010931510.1|3787673_3788624_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931511.1|3789229_3790243_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931512.1|3790290_3792036_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	25.1	6.5e-21
WP_005013747.1|3792266_3793217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813004.1|3793298_3793946_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_010931513.1|3793960_3795388_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	40.0	6.5e-19
WP_003813001.1|3795553_3796159_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_050849411.1|3796164_3796365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3796446_3797397_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302794.1|3797411_3797567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812997.1|3797588_3797855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931514.1|3798220_3798421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812993.1|3798437_3798695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931515.1|3800308_3801283_-	L-histidine N(alpha)-methyltransferase	NA	NA	NA	NA	NA
WP_010931516.1|3801614_3802214_+	membrane protein	NA	NA	NA	NA	NA
WP_010928587.1|3802201_3803632_+	cardiolipin synthase B	NA	NA	NA	NA	NA
WP_005012808.1|3803641_3804592_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3804690_3805641_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3805739_3806690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
