The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025988	Lactiplantibacillus plantarum strain LM1004 isolate kimchi chromosome, complete genome	3198690	884	46295	3198690	tRNA,terminase,portal,tail,capsid,protease,lysis	Lactobacillus_phage(89.29%)	44	NA	NA
WP_054396990.1|884_1298_+	hypothetical protein	NA	A0A2P0ZLC0	Lactobacillus_phage	94.9	3.7e-68
WP_158649760.1|1372_2032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_103001960.1|2227_2908_+|terminase	terminase	terminase	Q20DE0	Lactobacillus_phage	47.4	2.5e-45
WP_103001961.1|3078_3279_+	hypothetical protein	NA	A0A2P0ZLC2	Lactobacillus_phage	86.4	8.7e-15
WP_103001962.1|3262_3601_+	HNH endonuclease	NA	A0A2P0ZLC6	Lactobacillus_phage	97.3	4.3e-62
WP_103001963.1|3860_4103_+	hypothetical protein	NA	A0A2P0ZLD2	Lactobacillus_phage	98.8	1.6e-39
WP_063722965.1|4211_4499_+|terminase	P27 family phage terminase small subunit	terminase	A0A2P0ZLC8	Lactobacillus_phage	67.4	7.6e-28
WP_103001964.1|4495_6175_+|terminase	terminase large subunit	terminase	A0A2P0ZLE5	Lactobacillus_phage	70.0	8.2e-231
WP_024002305.1|6193_7336_+|portal	phage portal protein	portal	A0A2P0ZLC9	Lactobacillus_phage	98.9	2.5e-215
WP_103001965.1|7322_8075_+|protease	Clp protease ClpP	protease	A0A2P0ZLE3	Lactobacillus_phage	94.8	3.4e-128
WP_054396964.1|8095_9274_+|capsid	phage major capsid protein	capsid	A0A2P0ZLD6	Lactobacillus_phage	99.0	2.1e-217
WP_103001966.1|9412_9718_+	hypothetical protein	NA	A0A2P0ZLD5	Lactobacillus_phage	91.1	5.0e-46
WP_103001967.1|9698_10088_+	hypothetical protein	NA	A0A2P0ZLD1	Lactobacillus_phage	94.6	2.5e-66
WP_103001968.1|10084_10492_+	hypothetical protein	NA	A0A2P0ZLD7	Lactobacillus_phage	94.8	3.1e-67
WP_027822446.1|10488_10911_+	hypothetical protein	NA	A0A2P0ZLE4	Lactobacillus_phage	97.9	1.7e-71
WP_054396956.1|10925_11531_+|tail	phage tail protein	tail	A0A2P0ZLF5	Lactobacillus_phage	99.5	3.7e-109
WP_061871521.1|11505_11778_+	Ig-like domain-containing protein	NA	A0A2P0ZLD8	Lactobacillus_phage	98.9	7.2e-36
WP_076656057.1|11848_12163_+	hypothetical protein	NA	A0A2P0ZLF3	Lactobacillus_phage	91.3	1.9e-48
WP_054396950.1|12186_12408_+	hypothetical protein	NA	A0A2P0ZLD9	Lactobacillus_phage	100.0	1.0e-32
WP_103001969.1|12426_16971_+|tail	phage tail tape measure protein	tail	A0A2P0ZLF1	Lactobacillus_phage	96.8	0.0e+00
WP_103001970.1|16974_17796_+|tail	phage tail protein	tail	A0A2P0ZLE2	Lactobacillus_phage	98.2	1.1e-151
WP_103001971.1|17815_21730_+	hypothetical protein	NA	A0A2P0ZLE1	Lactobacillus_phage	84.8	0.0e+00
WP_103002278.1|21755_22238_+	DUF1617 family protein	NA	A0A2P0ZLE0	Lactobacillus_phage	93.1	5.7e-76
WP_003643917.1|22239_22674_+	hypothetical protein	NA	A0A2P0ZLE9	Lactobacillus_phage	100.0	1.2e-72
WP_103001972.1|22703_23081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_103001973.1|23080_23353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_103001974.1|23352_23637_+|lysis	lysis protein	lysis	A0A2P0ZLE8	Lactobacillus_phage	78.7	1.5e-31
WP_103001975.1|23636_24539_+	SH3 domain-containing protein	NA	A0A2P0ZLG2	Lactobacillus_phage	94.3	8.0e-116
WP_033608566.1|25102_25528_-	lipoprotein	NA	NA	NA	NA	NA
WP_003643143.1|25692_26706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_187344847.1|26811_27333_+	GtrA family protein	NA	NA	NA	NA	NA
WP_003645248.1|27432_27792_-	YisL family protein	NA	NA	NA	NA	NA
WP_103001976.1|27864_29721_-	bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
WP_103001977.1|29734_32041_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA	NA
WP_103001978.1|32929_34567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011101379.1|34544_35720_+	sulfate adenylyltransferase	NA	A0A2P1ELS9	Moumouvirus	31.9	2.2e-49
WP_103001979.1|35722_36346_+	adenylyl-sulfate kinase	NA	A0A2K9L4R9	Tupanvirus	40.6	6.3e-27
WP_024971593.1|36335_37292_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
WP_003645241.1|37513_39253_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA	NA
WP_103002280.1|39685_41461_+	SLC13 family permease	NA	NA	NA	NA	NA
WP_103001980.1|41736_43128_+	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_003643130.1|43254_43500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063485337.1|43888_44335_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_046038934.1|44606_46295_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.9	1.2e-75
>prophage 2
NZ_CP025988	Lactiplantibacillus plantarum strain LM1004 isolate kimchi chromosome, complete genome	3198690	72396	81359	3198690		Lactobacillus_phage(100.0%)	9	NA	NA
WP_103001985.1|72396_73626_+	hypothetical protein	NA	A0A2P0ZL72	Lactobacillus_phage	97.2	1.8e-214
WP_103001986.1|73716_74688_-	peptidase S41	NA	A0A2P0ZL68	Lactobacillus_phage	97.5	3.2e-179
WP_103001987.1|74873_75821_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	99.7	2.9e-177
WP_003643097.1|76163_76778_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	100.0	6.3e-112
WP_103001988.1|76780_79219_+	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	99.5	0.0e+00
WP_003643095.1|79306_79867_+	hypothetical protein	NA	A0A2P0ZL75	Lactobacillus_phage	100.0	2.7e-101
WP_053267624.1|79937_80378_-	nucleoside 2-deoxyribosyltransferase	NA	A0A2P0ZL88	Lactobacillus_phage	98.6	4.0e-76
WP_052098033.1|80722_81190_+	hypothetical protein	NA	A0A2P0ZL91	Lactobacillus_phage	99.4	6.1e-83
WP_103001989.1|81164_81359_+	hypothetical protein	NA	A0A2P0ZL95	Lactobacillus_phage	100.0	5.5e-30
>prophage 3
NZ_CP025988	Lactiplantibacillus plantarum strain LM1004 isolate kimchi chromosome, complete genome	3198690	581994	665342	3198690	tRNA,capsid,head,integrase,terminase,tail,holin,protease	Lactobacillus_phage(78.72%)	92	607576:607593	672284:672301
WP_003640716.1|581994_582918_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003640717.1|583402_583924_-	shikimate kinase	NA	NA	NA	NA	NA
WP_003644490.1|583926_585024_-	prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_024521658.1|585026_586325_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_003644492.1|586338_586866_-	amino acid biosynthesis protein	NA	NA	NA	NA	NA
WP_103002046.1|586874_588044_-	chorismate synthase	NA	NA	NA	NA	NA
WP_021356198.1|588036_589491_-	MFS transporter	NA	NA	NA	NA	NA
WP_003640723.1|590139_590493_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_003645962.1|590515_593092_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.3	9.6e-21
WP_003640725.1|593106_593412_-	ribosomal L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA	NA
WP_003640726.1|593401_593701_-	YlxR family protein	NA	NA	NA	NA	NA
WP_003640727.1|593745_594963_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_003640728.1|594983_595460_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_003640729.1|595755_600069_-	DNA polymerase III subunit alpha	NA	A0A1X9SH08	Bradyrhizobium_phage	34.0	1.0e-14
WP_003640732.1|600562_602272_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003640733.1|602311_603589_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_003640734.1|603626_604412_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003640735.1|604427_605207_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	43.1	1.1e-23
WP_003640736.1|605326_605890_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_003640737.1|605891_606614_-	UMP kinase	NA	NA	NA	NA	NA
WP_063487838.1|606813_607692_-	elongation factor Ts	NA	NA	NA	NA	NA
607576:607593	attL	GTCAACGGCTTTTTCCAT	NA	NA	NA	NA
WP_003640739.1|607794_608598_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_003640740.1|608822_609545_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_003640741.1|609833_610832_-	D-2-hydroxyacid dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	34.9	2.3e-47
WP_003640742.1|610916_611222_-	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_003644499.1|611205_611964_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_003645630.1|612075_612711_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_003640745.1|612767_613004_-	YneF family protein	NA	NA	NA	NA	NA
WP_003644501.1|613101_613341_-	DUF896 domain-containing protein	NA	NA	NA	NA	NA
WP_003640747.1|613492_614125_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	56.2	2.3e-16
WP_003644502.1|614676_615306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_103002047.1|615355_616525_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA	NA
WP_024272621.1|616572_616953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021356900.1|617116_617509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003640752.1|617954_618896_+	glycosyltransferase family 2 protein	NA	V9QJB1	Oenococcus_phage	49.0	2.4e-78
WP_031275254.1|619647_620220_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_103002048.1|620371_621556_-	LCP family protein	NA	NA	NA	NA	NA
WP_003644506.1|621536_622328_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.8	2.7e-30
WP_003644507.1|622346_624089_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_063487841.1|624567_625779_-	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_103002049.1|626565_626940_-|holin	holin	holin	A0A2P0ZLG6	Lactobacillus_phage	63.2	4.5e-12
WP_103002050.1|626949_627213_-	hemolysin XhlA family protein	NA	E9LUR9	Lactobacillus_phage	94.3	8.2e-37
WP_013355620.1|628243_628603_-	hypothetical protein	NA	A0A2P0ZLF6	Lactobacillus_phage	80.7	5.9e-46
WP_003644513.1|628586_628748_-	hypothetical protein	NA	A0A2P0ZLG1	Lactobacillus_phage	100.0	9.5e-20
WP_013355621.1|628751_629003_-	hypothetical protein	NA	A0A2K9VDF6	Lactobacillus_phage	98.6	2.4e-30
WP_103002051.1|631812_634227_-|tail	phage tail protein	tail	A0A2P0ZLF8	Lactobacillus_phage	91.7	0.0e+00
WP_103002052.1|634292_636065_-|tail	phage tail family protein	tail	A0A2P0ZLH2	Lactobacillus_phage	93.6	0.0e+00
WP_103002053.1|636138_641169_-	C40 family peptidase	NA	A0A2P0ZLG0	Lactobacillus_phage	53.0	0.0e+00
WP_003644519.1|641200_641392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003644520.1|641430_641805_-|tail	phage tail assembly chaperone	tail	A0A2P0ZLH4	Lactobacillus_phage	96.0	3.2e-58
WP_003641402.1|641881_642535_-|tail	phage tail protein	tail	A0A2P0ZLH1	Lactobacillus_phage	94.0	1.5e-111
WP_003641401.1|642550_642931_-	DUF806 family protein	NA	A0A2P0ZLF4	Lactobacillus_phage	92.1	1.0e-59
WP_003641400.1|642930_643338_-	HK97 gp10 family phage protein	NA	A0A2P0ZLE6	Lactobacillus_phage	93.2	2.2e-65
WP_047673058.1|643340_643688_-|head	phage head closure protein	head	A0A2P0ZLF0	Lactobacillus_phage	71.3	6.6e-42
WP_025015703.1|643677_644010_-|head,tail	phage gp6-like head-tail connector protein	head,tail	E9LUQ4	Lactobacillus_phage	88.0	7.2e-46
WP_003641397.1|644082_645315_-|capsid	phage major capsid protein	capsid	E9LUQ3	Lactobacillus_phage	87.2	8.5e-201
WP_064775255.1|645329_646073_-|protease	Clp protease ClpP	protease	E9LUQ2	Lactobacillus_phage	95.5	2.7e-125
WP_003644528.1|647246_647441_-	DUF1056 family protein	NA	E9LUQ0	Lactobacillus_phage	98.4	7.4e-27
WP_103002054.1|647430_649329_-|terminase	terminase large subunit	terminase	E9LUP9	Lactobacillus_phage	95.7	0.0e+00
WP_003644530.1|649331_649790_-|terminase	phage terminase small subunit P27 family	terminase	E9LUP8	Lactobacillus_phage	94.0	5.8e-78
WP_158649762.1|649920_650436_-	HNH endonuclease	NA	U5U4N5	Lactobacillus_phage	43.3	7.0e-32
WP_187344853.1|650428_650911_-	HNH endonuclease	NA	E9LUP7	Lactobacillus_phage	87.0	4.3e-76
WP_103002057.1|650921_651101_-	hypothetical protein	NA	E9LUP6	Lactobacillus_phage	69.5	1.9e-13
WP_063845793.1|651293_651842_-	hypothetical protein	NA	D2IYV7	Enterococcus_phage	27.6	1.8e-17
WP_033614070.1|652330_652762_-	transcriptional regulator	NA	E9LUP5	Lactobacillus_phage	95.8	1.2e-74
WP_103002058.1|652742_652913_-	hypothetical protein	NA	E9LUP4	Lactobacillus_phage	92.9	1.0e-19
WP_158649763.1|653030_653543_-	DUF1642 domain-containing protein	NA	A0A2K9VC25	Lactobacillus_phage	56.0	2.4e-40
WP_165274446.1|653526_653703_-	hypothetical protein	NA	E9LUP2	Lactobacillus_phage	72.4	2.8e-17
WP_103002060.1|653705_653864_-	hypothetical protein	NA	A0A2P0ZLB5	Lactobacillus_phage	88.5	3.3e-17
WP_063845651.1|653867_654179_-	hypothetical protein	NA	A0A2P0ZLB4	Lactobacillus_phage	98.1	4.8e-52
WP_103002061.1|654181_654484_-	hypothetical protein	NA	E9LUN7	Lactobacillus_phage	86.0	4.7e-44
WP_046038735.1|654619_655405_-	ATP-binding protein	NA	E9LUN6	Lactobacillus_phage	91.2	4.1e-132
WP_158649764.1|656194_656752_-	HNH endonuclease	NA	A0A1P8BKS1	Lactococcus_phage	49.6	3.5e-21
WP_033098960.1|656827_657085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_063722548.1|657084_657291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_165274443.1|657376_657529_-	hypothetical protein	NA	E9LUT8	Lactobacillus_phage	63.3	2.3e-07
WP_003641371.1|657540_657741_-	hypothetical protein	NA	E9LUT7	Lactobacillus_phage	89.4	1.0e-26
WP_003641370.1|657743_657992_-	hypothetical protein	NA	E9LUT6	Lactobacillus_phage	76.1	2.7e-29
WP_003641369.1|658004_658208_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003641368.1|658373_658664_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003641367.1|659257_659518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025015699.1|659575_659797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003641365.1|659791_660040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003641364.1|660053_660263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080468060.1|660274_661018_-	ORF6C domain-containing protein	NA	A0A1P8BM06	Lactococcus_phage	46.0	1.7e-50
WP_003641362.1|661091_661307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003641361.1|661563_661890_+	helix-turn-helix transcriptional regulator	NA	A0A1B0Y2R0	Lactobacillus_phage	44.1	6.9e-17
WP_003641360.1|661920_662310_+	ImmA/IrrE family metallo-endopeptidase	NA	D6PSS8	Lactobacillus_phage	54.3	4.6e-36
WP_025015697.1|662374_663151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003641358.1|663162_663363_+	hypothetical protein	NA	E9LUS6	Lactobacillus_phage	100.0	4.9e-26
WP_003641356.1|663696_664011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063845777.1|664178_665342_+|integrase	site-specific integrase	integrase	E9LUK6	Lactobacillus_phage	37.1	1.3e-62
672284:672301	attR	GTCAACGGCTTTTTCCAT	NA	NA	NA	NA
>prophage 4
NZ_CP025988	Lactiplantibacillus plantarum strain LM1004 isolate kimchi chromosome, complete genome	3198690	959713	978070	3198690	holin,tail,capsid,head	Lactobacillus_phage(57.14%)	24	NA	NA
WP_103002076.1|959713_960097_-|holin	holin	holin	A0A2H4PBB2	Lactobacillus_phage	85.4	8.4e-14
WP_072557963.1|960083_960380_-	hypothetical protein	NA	A0A2K9VCD4	Lactobacillus_phage	72.4	5.4e-37
WP_187344855.1|960380_961496_-	LysM peptidoglycan-binding domain-containing protein	NA	O03950	Lactobacillus_phage	34.8	2.1e-33
WP_103002077.1|961554_961701_-	XkdX family protein	NA	NA	NA	NA	NA
WP_103002078.1|961697_962021_-	DUF2977 domain-containing protein	NA	NA	NA	NA	NA
WP_103002079.1|962020_962791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_103002080.1|962803_964603_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_103002081.1|964603_964879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_103002082.1|964871_965237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158649765.1|965211_966384_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_027821929.1|966391_967303_-|tail	phage tail family protein	tail	Q9T1A6	Listeria_phage	30.3	1.6e-18
WP_027821928.1|967375_967654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_103002282.1|967678_971467_-	tape measure protein	NA	A0A0A7DMV4	Lactobacillus_phage	57.9	6.7e-39
WP_061871561.1|971691_971949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061871562.1|972023_972542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027821925.1|972570_973224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_103002084.1|973261_973669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_103002085.1|973671_974163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033608065.1|974163_974496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027821922.1|974492_974861_-|head,tail	phage head-tail connector protein	head,tail	NA	NA	NA	NA
WP_050482355.1|974878_975988_-|capsid	major capsid protein	capsid	A0A2H4J022	uncultured_Caudovirales_phage	40.1	1.8e-61
WP_027821921.1|976003_976375_-	hypothetical protein	NA	A0A0K2CNR0	Brevibacillus_phage	33.6	1.5e-07
WP_103002086.1|976388_977048_-	DUF4355 domain-containing protein	NA	NA	NA	NA	NA
WP_103002087.1|977158_978070_-|capsid	minor capsid protein	capsid	NA	NA	NA	NA
>prophage 5
NZ_CP025988	Lactiplantibacillus plantarum strain LM1004 isolate kimchi chromosome, complete genome	3198690	985003	1001948	3198690	integrase	Lactobacillus_phage(73.68%)	30	980389:980403	1009626:1009640
980389:980403	attL	ATATCATTTGAAACA	NA	NA	NA	NA
WP_077143397.1|985003_985465_-	transcriptional regulator	NA	D6PSV8	Lactobacillus_phage	57.0	8.2e-40
WP_080440469.1|985592_985760_-	hypothetical protein	NA	E9LUP4	Lactobacillus_phage	93.6	5.6e-15
WP_060418045.1|985752_986223_-	hypothetical protein	NA	A0A2P0ZLB8	Lactobacillus_phage	50.9	5.2e-34
WP_103002091.1|986295_986676_-	hypothetical protein	NA	A0A2P0ZKS9	Lactobacillus_phage	57.7	1.0e-32
WP_187330242.1|986668_986845_-	hypothetical protein	NA	E9LUP2	Lactobacillus_phage	94.8	1.1e-24
WP_103002092.1|986847_987006_-	hypothetical protein	NA	A0A2P0ZLB5	Lactobacillus_phage	92.3	1.9e-17
WP_047673732.1|986998_987379_-	endodeoxyribonuclease	NA	NA	NA	NA	NA
WP_103002093.1|987375_987894_-	hypothetical protein	NA	O03915	Lactobacillus_phage	69.1	4.5e-55
WP_011101096.1|987890_988421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_103002094.1|988417_988705_-	hypothetical protein	NA	NA	NA	NA	NA
WP_103002095.1|988701_989610_-	DnaD domain protein	NA	NA	NA	NA	NA
WP_060684052.1|990056_990263_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_063492987.1|990344_991097_-	PD-(D/E)XK nuclease-like domain-containing protein	NA	A0A0P0IZH9	Lactobacillus_phage	51.4	2.4e-73
WP_103002096.1|991128_992016_-	recombinase RecT	NA	E9LUM3	Lactobacillus_phage	47.4	3.9e-62
WP_103002097.1|992012_992399_-	hypothetical protein	NA	NA	NA	NA	NA
WP_103002098.1|992769_993282_-	helix-turn-helix transcriptional regulator	NA	D6PST4	Lactobacillus_phage	42.9	2.3e-27
WP_016511199.1|993349_993655_-	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_003642792.1|993666_993837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076634767.1|993833_994088_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JFN1	uncultured_Caudovirales_phage	39.4	1.1e-06
WP_063204180.1|994229_994748_+	helix-turn-helix domain-containing protein	NA	S6C481	Thermus_phage	34.1	3.5e-15
WP_103002099.1|994762_995185_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0S2SXM3	Bacillus_phage	35.1	6.0e-13
WP_103002100.1|995242_995944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_103002101.1|996042_996606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_103002102.1|996598_997030_+	hypothetical protein	NA	A0A1Q1PVT2	Staphylococcus_phage	25.2	8.0e-05
WP_076637223.1|997172_997349_+	hypothetical protein	NA	A0A2P0ZL93	Lactobacillus_phage	53.4	1.6e-07
WP_060684061.1|997844_998405_+	DUF5067 domain-containing protein	NA	Q6SEF8	Lactobacillus_prophage	65.9	1.3e-44
WP_060684062.1|998459_998795_+	hypothetical protein	NA	A0A1B0Y4P2	Lactobacillus_phage	53.9	6.4e-26
WP_076640401.1|999071_999248_+	hypothetical protein	NA	A0A2P0ZL93	Lactobacillus_phage	51.7	3.3e-10
WP_103002103.1|999442_1000537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_103002104.1|1000826_1001948_+|integrase	site-specific integrase	integrase	D6PSS4	Lactobacillus_phage	32.1	6.4e-46
1009626:1009640	attR	ATATCATTTGAAACA	NA	NA	NA	NA
>prophage 6
NZ_CP025988	Lactiplantibacillus plantarum strain LM1004 isolate kimchi chromosome, complete genome	3198690	1202706	1211217	3198690		Synechococcus_phage(33.33%)	9	NA	NA
WP_003642593.1|1202706_1203285_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	1.9e-22
WP_076670405.1|1203277_1204303_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.4	1.9e-60
WP_103002118.1|1204299_1205754_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.0	1.5e-50
WP_021356102.1|1205738_1207958_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.1	3.5e-144
WP_021356103.1|1207950_1208631_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003642588.1|1208630_1208885_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_021356104.1|1208886_1209618_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4SM18	Cyanophage	37.3	2.1e-37
WP_024521791.1|1209620_1210751_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_187331169.1|1210734_1211217_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	41.0	3.0e-16
>prophage 7
NZ_CP025988	Lactiplantibacillus plantarum strain LM1004 isolate kimchi chromosome, complete genome	3198690	2339600	2387671	3198690	protease,bacteriocin	Bacillus_virus(50.0%)	47	NA	NA
WP_003643762.1|2339600_2340164_-|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_011100974.1|2340357_2341026_+	ribose 5-phosphate isomerase A	NA	NA	NA	NA	NA
WP_003641930.1|2341175_2342681_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA	NA
WP_003643763.1|2342945_2343314_+	DUF1304 domain-containing protein	NA	NA	NA	NA	NA
WP_003641932.1|2343426_2343936_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_024521227.1|2343966_2345163_-	DUF2075 domain-containing protein	NA	NA	NA	NA	NA
WP_003646440.1|2345272_2345743_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_011100976.1|2345761_2346217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003641936.1|2346320_2346893_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA	NA
WP_011100977.1|2347058_2347979_-	ribonucleoside hydrolase RihC	NA	NA	NA	NA	NA
WP_003643768.1|2348115_2349027_+	oxidoreductase	NA	NA	NA	NA	NA
WP_063487618.1|2349914_2350361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003643770.1|2350598_2352125_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_015825109.1|2352125_2353097_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	1.7e-23
WP_003643772.1|2353174_2354506_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003643773.1|2354971_2356489_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003643774.1|2356503_2358333_+	type 1 glycerol-3-phosphate oxidase	NA	NA	NA	NA	NA
WP_103002212.1|2358347_2359070_+	aquaporin family protein	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	31.9	5.4e-30
WP_076670343.1|2359656_2363358_+	MucBP domain-containing protein	NA	NA	NA	NA	NA
WP_103002213.1|2363359_2365195_+	pre-toxin TG domain-containing protein	NA	NA	NA	NA	NA
WP_003641948.1|2365191_2366109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_053267428.1|2366152_2366416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003646452.1|2366746_2366986_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003646453.1|2367003_2367390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157951538.1|2368232_2368379_+	glycohydrolase toxin TNT-related protein	NA	NA	NA	NA	NA
WP_011100990.1|2368455_2368863_+	immunity 63 family protein	NA	NA	NA	NA	NA
WP_080468009.1|2369362_2369701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072540096.1|2370041_2370320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_103002214.1|2370701_2371319_-	sugar O-acetyltransferase	NA	NA	NA	NA	NA
WP_003646460.1|2371322_2372477_-	MFS transporter	NA	NA	NA	NA	NA
WP_003643796.1|2372480_2373272_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_063487610.1|2373342_2374215_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003641966.1|2374374_2375190_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_060677623.1|2375715_2377092_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_011100995.1|2377136_2378321_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003641969.1|2378705_2378909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063487607.1|2379320_2379989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_063487606.1|2381169_2381370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003641975.1|2381497_2381665_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003641976.1|2381782_2382982_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_063487605.1|2383012_2383759_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003643807.1|2383890_2384040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003643808.1|2384053_2385394_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_063487604.1|2385394_2386138_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003646470.1|2386442_2387216_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003643811.1|2387317_2387476_-|bacteriocin	two-peptide bacteriocin plantaricin EF subunit PlnF	bacteriocin	NA	NA	NA	NA
WP_003641985.1|2387500_2387671_-|bacteriocin	two-peptide bacteriocin plantaricin EF subunit PlnE	bacteriocin	NA	NA	NA	NA
>prophage 8
NZ_CP025988	Lactiplantibacillus plantarum strain LM1004 isolate kimchi chromosome, complete genome	3198690	2577683	2586307	3198690		Streptococcus_phage(66.67%)	11	NA	NA
WP_003644909.1|2577683_2579381_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	37.0	3.9e-55
WP_003640956.1|2579402_2579711_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_003637790.1|2579726_2580326_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_003640957.1|2580340_2580592_+	YaaL family protein	NA	NA	NA	NA	NA
WP_011101140.1|2580989_2581655_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.7	1.4e-53
WP_003640965.1|2581651_2581981_+	cyclic-di-AMP receptor	NA	NA	NA	NA	NA
WP_003640966.1|2581997_2583017_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	33.5	2.1e-32
WP_003640967.1|2583041_2583389_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	33.3	2.4e-12
WP_003643942.1|2583487_2584384_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	55.7	9.9e-82
WP_003640969.1|2584387_2585173_+	acyl-ACP thioesterase	NA	NA	NA	NA	NA
WP_013355240.1|2585311_2586307_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.5	2.0e-51
>prophage 9
NZ_CP025988	Lactiplantibacillus plantarum strain LM1004 isolate kimchi chromosome, complete genome	3198690	3182843	3198375	3198690	integrase	Lactobacillus_phage(82.35%)	20	3184232:3184245	3187717:3187730
WP_060683879.1|3182843_3185111_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	31.5	1.1e-118
3184232:3184245	attL	TATTAATGAAAATA	NA	NA	NA	NA
WP_103002263.1|3185698_3186829_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0M9JJ77	Lactobacillus_phage	48.2	7.0e-93
WP_103002264.1|3186934_3187423_-	cupin domain-containing protein	NA	A0A291ATU0	Pandoravirus	34.8	2.2e-11
WP_103002266.1|3188100_3188724_-	hypothetical protein	NA	NA	NA	NA	NA
3187717:3187730	attR	TATTAATGAAAATA	NA	NA	NA	NA
WP_103002267.1|3188815_3189247_-	hypothetical protein	NA	A0A2P0ZLA0	Lactobacillus_phage	99.3	1.7e-79
WP_027822424.1|3189256_3189634_-	helix-turn-helix transcriptional regulator	NA	A0A2P0ZLA1	Lactobacillus_phage	69.4	4.0e-45
WP_015380155.1|3189946_3190156_+	hypothetical protein	NA	A0A2P0ZL97	Lactobacillus_phage	98.6	1.6e-30
WP_102170767.1|3190159_3190363_+	hypothetical protein	NA	A0A2P0ZLA4	Lactobacillus_phage	86.6	1.5e-25
WP_103002268.1|3190362_3190701_+	DUF771 domain-containing protein	NA	E9LUT3	Lactobacillus_phage	66.7	3.3e-30
WP_103002269.1|3190815_3191097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_103002270.1|3191246_3191432_+	hypothetical protein	NA	A0A2P0ZLA3	Lactobacillus_phage	91.8	9.2e-27
WP_103002271.1|3191676_3192156_+	siphovirus Gp157 family protein	NA	A0A2P0ZLB3	Lactobacillus_phage	96.2	4.5e-81
WP_103002272.1|3192155_3193532_+	DEAD/DEAH box helicase family protein	NA	A0A2P0ZLA5	Lactobacillus_phage	95.3	1.9e-233
WP_054397017.1|3193528_3193750_+	helix-turn-helix transcriptional regulator	NA	A0A0A7RUJ5	Clostridium_phage	40.3	5.7e-07
WP_054397014.1|3193727_3194444_+	AAA family ATPase	NA	A0A2P0ZLB2	Lactobacillus_phage	99.1	1.3e-113
WP_063964021.1|3194446_3195070_+	hypothetical protein	NA	A0A2P0ZLB9	Lactobacillus_phage	97.9	2.3e-101
WP_103002273.1|3195083_3195638_+	DNA primase	NA	NA	NA	NA	NA
WP_103002274.1|3195710_3196505_+	bifunctional DNA primase/polymerase	NA	A0A2P0ZLB0	Lactobacillus_phage	92.4	1.7e-138
WP_103002275.1|3196501_3197776_+	helicase	NA	A0A2P0ZLC4	Lactobacillus_phage	98.8	7.1e-243
WP_103002276.1|3198033_3198375_+	VRR-NUC domain-containing protein	NA	A0A2P0ZLB6	Lactobacillus_phage	89.4	3.9e-55
