assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002902825.1_ASM290282v1	NZ_CP026097	Lacticaseibacillus paracasei strain HDS-01 chromosome, complete genome	1	260599-260740	1	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas1,cas9	Orphan	TCTGCGCCTGTTTGCGCGTTTCGAAAGTAGAGCATAAGCGGC	42	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas1,cas9	NA|115aa|up_7|NZ_CP026097.1_251730_252075_+,NA|111aa|down_5|NZ_CP026097.1_266020_266353_+	NA|523aa|up_9|NZ_CP026097.1_248376_249945_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|451aa|up_8|NZ_CP026097.1_250129_251482_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|115aa|up_7|NZ_CP026097.1_251730_252075_+	NA	NA|240aa|up_6|NZ_CP026097.1_252148_252868_+	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters	NA|266aa|up_5|NZ_CP026097.1_252864_253662_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|283aa|up_4|NZ_CP026097.1_253733_254582_-	cd00841, MPP_YfcE, Escherichia coli YfcE and related proteins, metallophosphatase domain	NA|294aa|up_3|NZ_CP026097.1_254578_255460_-	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|600aa|up_2|NZ_CP026097.1_255456_257256_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|365aa|up_1|NZ_CP026097.1_257384_258479_+	PRK09379, PRK09379, LytR family transcriptional regulator	NA|460aa|up_0|NZ_CP026097.1_258703_260083_-	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|415aa|down_0|NZ_CP026097.1_260968_262213_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|229aa|down_1|NZ_CP026097.1_262393_263080_-	cd14667, 3D_containing_proteins, Non-mltA associated 3D domain containing proteins, named for 3 conserved aspartate residues	NA|253aa|down_2|NZ_CP026097.1_263524_264283_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|261aa|down_3|NZ_CP026097.1_264367_265150_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|248aa|down_4|NZ_CP026097.1_265168_265912_+	COG5523, COG5523, Predicted integral membrane protein [Function unknown]	NA|111aa|down_5|NZ_CP026097.1_266020_266353_+	NA	NA|200aa|down_6|NZ_CP026097.1_266655_267255_-	TIGR02227, Inactive_signal_peptidase_IA	NA|313aa|down_7|NZ_CP026097.1_267332_268271_-	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase	NA|516aa|down_8|NZ_CP026097.1_268650_270198_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|247aa|down_9|NZ_CP026097.1_270357_271098_-	pfam13649, Methyltransf_25, Methyltransferase domain
GCF_002902825.1_ASM290282v1	NZ_CP026097	Lacticaseibacillus paracasei strain HDS-01 chromosome, complete genome	2	663259-663367	2	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas1,cas9	Orphan	GGTCCTTACACGTAGGTTTCTGGTCTG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas1,cas9	NA|576aa|up_3|NZ_CP026097.1_658928_660656_-,NA	NA|674aa|up_9|NZ_CP026097.1_650781_652803_+	cd01951, lectin_L-type, legume lectins	NA|234aa|up_8|NZ_CP026097.1_653642_654344_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|120aa|up_7|NZ_CP026097.1_654495_654855_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|234aa|up_6|NZ_CP026097.1_654838_655540_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|674aa|up_5|NZ_CP026097.1_655689_657711_+	cd01951, lectin_L-type, legume lectins	NA|325aa|up_4|NZ_CP026097.1_657786_658761_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|576aa|up_3|NZ_CP026097.1_658928_660656_-	NA	NA|265aa|up_2|NZ_CP026097.1_660642_661437_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|183aa|up_1|NZ_CP026097.1_661688_662237_-	COG4720, COG4720, Predicted membrane protein [Function unknown]	NA|275aa|up_0|NZ_CP026097.1_662284_663109_-	PRK07105, PRK07105, pyridoxamine kinase; Validated	NA|291aa|down_0|NZ_CP026097.1_663490_664363_-	TIGR00676, 510-methylenetetrahydrofolate_reductase	NA|762aa|down_1|NZ_CP026097.1_664340_666626_-	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|573aa|down_2|NZ_CP026097.1_667760_669479_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|594aa|down_3|NZ_CP026097.1_669483_671265_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|415aa|down_4|NZ_CP026097.1_671426_672671_+	cd17353, MFS_OFA_like, Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters	NA|239aa|down_5|NZ_CP026097.1_672958_673675_+	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|549aa|down_6|NZ_CP026097.1_673900_675547_+	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|668aa|down_7|NZ_CP026097.1_675637_677641_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|435aa|down_8|NZ_CP026097.1_677981_679286_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|492aa|down_9|NZ_CP026097.1_679507_680983_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter
GCF_002902825.1_ASM290282v1	NZ_CP026097	Lacticaseibacillus paracasei strain HDS-01 chromosome, complete genome	3	752014-752141	3	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas1,cas9	Orphan	GGTTTCTGGGCCGGTTTGCGCGTTTCGGAGTTCAGCAATATCAG	44	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas1,cas9	NA|48aa|up_0|NZ_CP026097.1_751720_751864_+,NA|60aa|down_4|NZ_CP026097.1_756425_756605_+,NA|175aa|down_5|NZ_CP026097.1_756682_757207_+,NA|354aa|down_7|NZ_CP026097.1_759137_760199_-,NA|277aa|down_8|NZ_CP026097.1_760191_761022_-	NA|227aa|up_9|NZ_CP026097.1_741677_742358_-	pfam16161, DUF4867, Domain of unknown function (DUF4867)	NA|313aa|up_8|NZ_CP026097.1_742379_743318_-	PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional	NA|334aa|up_7|NZ_CP026097.1_743432_744434_-	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed	NA|173aa|up_6|NZ_CP026097.1_744472_744991_-	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|143aa|up_5|NZ_CP026097.1_745035_745464_-	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|259aa|up_4|NZ_CP026097.1_745468_746245_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|209aa|up_3|NZ_CP026097.1_746688_747315_-	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase	NA|374aa|up_2|NZ_CP026097.1_747375_748497_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1042aa|up_1|NZ_CP026097.1_748496_751622_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|48aa|up_0|NZ_CP026097.1_751720_751864_+	NA	NA|159aa|down_0|NZ_CP026097.1_752611_753088_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|368aa|down_1|NZ_CP026097.1_753658_754762_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|262aa|down_2|NZ_CP026097.1_754972_755758_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|223aa|down_3|NZ_CP026097.1_755760_756429_+	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]	NA|60aa|down_4|NZ_CP026097.1_756425_756605_+	NA	NA|175aa|down_5|NZ_CP026097.1_756682_757207_+	NA	NA|211aa|down_6|NZ_CP026097.1_757439_758072_+	COG4832, COG4832, Uncharacterized conserved protein [Function unknown]	NA|354aa|down_7|NZ_CP026097.1_759137_760199_-	NA	NA|277aa|down_8|NZ_CP026097.1_760191_761022_-	NA	NA|217aa|down_9|NZ_CP026097.1_761251_761902_+	cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs
GCF_002902825.1_ASM290282v1	NZ_CP026097	Lacticaseibacillus paracasei strain HDS-01 chromosome, complete genome	4	1927935-1928052	4	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas1,cas9	Orphan	GGTCCTTATGTGTAGGTTTCTGGGCCAGC	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas1,cas9	NA,NA|125aa|down_1|NZ_CP026097.1_1930955_1931330_-,NA|141aa|down_2|NZ_CP026097.1_1931469_1931892_-,NA|56aa|down_6|NZ_CP026097.1_1937593_1937761_-	NA|887aa|up_9|NZ_CP026097.1_1911961_1914622_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|386aa|up_8|NZ_CP026097.1_1914930_1916088_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|276aa|up_7|NZ_CP026097.1_1916353_1917181_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|398aa|up_6|NZ_CP026097.1_1917183_1918377_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|488aa|up_5|NZ_CP026097.1_1918380_1919844_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|234aa|up_4|NZ_CP026097.1_1920288_1920990_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|382aa|up_3|NZ_CP026097.1_1921014_1922160_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|659aa|up_2|NZ_CP026097.1_1923075_1925052_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|276aa|up_1|NZ_CP026097.1_1925380_1926208_-	TIGR03729, acc_ester, putative phosphoesterase	NA|489aa|up_0|NZ_CP026097.1_1926269_1927736_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|773aa|down_0|NZ_CP026097.1_1928211_1930530_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|125aa|down_1|NZ_CP026097.1_1930955_1931330_-	NA	NA|141aa|down_2|NZ_CP026097.1_1931469_1931892_-	NA	NA|379aa|down_3|NZ_CP026097.1_1933978_1935115_+	pfam01120, Alpha_L_fucos, Alpha-L-fucosidase	NA|106aa|down_4|NZ_CP026097.1_1935223_1935541_-	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|556aa|down_5|NZ_CP026097.1_1935711_1937379_-	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase	NA|56aa|down_6|NZ_CP026097.1_1937593_1937761_-	NA	NA|704aa|down_7|NZ_CP026097.1_1937796_1939908_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|164aa|down_8|NZ_CP026097.1_1939894_1940386_-	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|251aa|down_9|NZ_CP026097.1_1940584_1941337_-	cd01840, SGNH_hydrolase_yrhL_like, yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases
GCF_002902825.1_ASM290282v1	NZ_CP026097	Lacticaseibacillus paracasei strain HDS-01 chromosome, complete genome	5	2306484-2308499	5,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas1,cas9	Type II-A,Type II-C,Type II-B	GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	36,36,36,36	0	0	NA	NA	NA:NA:NA:NA	30,30,29,29	30	TypeII-A,TypeII-C,TypeII-B	csa3,DinG,WYL,DEDDh,cas3,csn2,cas2,cas1,cas9	NA|367aa|up_0|NZ_CP026097.1_2305101_2306202_-,NA|265aa|down_4|NZ_CP026097.1_2314816_2315611_-,NA|389aa|down_5|NZ_CP026097.1_2315611_2316778_-,NA|108aa|down_7|NZ_CP026097.1_2317444_2317768_+	NA|476aa|up_9|NZ_CP026097.1_2290690_2292118_+	pfam03577, Peptidase_C69, Peptidase family C69	NA|444aa|up_8|NZ_CP026097.1_2292219_2293551_-	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|189aa|up_7|NZ_CP026097.1_2295339_2295906_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|483aa|up_6|NZ_CP026097.1_2296032_2297481_-	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|613aa|up_5|NZ_CP026097.1_2297725_2299564_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|286aa|up_4|NZ_CP026097.1_2300015_2300873_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|544aa|up_3|NZ_CP026097.1_2301009_2302641_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|564aa|up_2|NZ_CP026097.1_2302637_2304329_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|142aa|up_1|NZ_CP026097.1_2304525_2304951_-	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|367aa|up_0|NZ_CP026097.1_2305101_2306202_-	NA	csn2|226aa|down_0|NZ_CP026097.1_2308523_2309201_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP026097.1_2309197_2309503_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NZ_CP026097.1_2309480_2310386_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1362aa|down_3|NZ_CP026097.1_2310582_2314668_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|265aa|down_4|NZ_CP026097.1_2314816_2315611_-	NA	NA|389aa|down_5|NZ_CP026097.1_2315611_2316778_-	NA	NA|125aa|down_6|NZ_CP026097.1_2317001_2317376_+	pfam06486, DUF1093, Protein of unknown function (DUF1093)	NA|108aa|down_7|NZ_CP026097.1_2317444_2317768_+	NA	NA|576aa|down_8|NZ_CP026097.1_2317839_2319567_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|581aa|down_9|NZ_CP026097.1_2319547_2321290_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
