assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002903025.1_ASM290302v1	NZ_CP026178	Klebsiella pneumoniae strain KPNIH49 chromosome, complete genome	1	4507163-4507289	1	CRISPRCasFinder	no		DinG,cas3,csa3,RT,DEDDh,WYL	Orphan	TCGCGGGTTGTGTAGCCCGGGTAAGGCGCGAATCGCCGC	39	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,csa3,RT,DEDDh,WYL,TnsE_C	NA|29aa|up_1|NZ_CP026178.1_4505984_4506071_+,NA	NA|266aa|up_9|NZ_CP026178.1_4498919_4499717_-	TIGR02311, 24-dihydroxyhept-2-ene-17-dioic_acid_aldolase, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	NA|268aa|up_8|NZ_CP026178.1_4499727_4500531_-	TIGR02312, 2-keto-4-pentenoate_hydratase, 2-oxo-hepta-3-ene-1,7-dioic acid hydratase	NA|127aa|up_7|NZ_CP026178.1_4500639_4501020_-	PRK15031, PRK15031, 5-carboxymethyl-2-hydroxymuconate Delta-isomerase	NA|286aa|up_6|NZ_CP026178.1_4501029_4501887_-	TIGR02298, putative_34-dihydroxyphenylacetate_23-dioxygenase, 3,4-dihydroxyphenylacetate 2,3-dioxygenase	NA|489aa|up_5|NZ_CP026178.1_4501888_4503355_-	cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8 member A1-like	NA|255aa|up_4|NZ_CP026178.1_4503351_4504116_-	PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	NA|211aa|up_3|NZ_CP026178.1_4504112_4504745_-	PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	NA|147aa|up_2|NZ_CP026178.1_4505031_4505472_+	TIGR02337, Homoprotocatechuate_degradative_operon_repressor	NA|29aa|up_1|NZ_CP026178.1_4505984_4506071_+	NA	NA|339aa|up_0|NZ_CP026178.1_4506082_4507099_+	COG2055, COG2055, Malate/L-lactate dehydrogenases [Energy production and conversion]	NA|407aa|down_0|NZ_CP026178.1_4507303_4508524_-	cd06818, PLPDE_III_cryptic_DSD, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase	NA|480aa|down_1|NZ_CP026178.1_4508724_4510164_+	cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics	NA|131aa|down_2|NZ_CP026178.1_4510174_4510567_+	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|496aa|down_3|NZ_CP026178.1_4510751_4512239_+	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain	NA|291aa|down_4|NZ_CP026178.1_4512248_4513121_+	pfam05035, DGOK, 2-keto-3-deoxy-galactonokinase	NA|200aa|down_5|NZ_CP026178.1_4513107_4513707_+	PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed	NA|288aa|down_6|NZ_CP026178.1_4513703_4514567_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|178aa|down_7|NZ_CP026178.1_4514637_4515171_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|277aa|down_8|NZ_CP026178.1_4515203_4516034_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|922aa|down_9|NZ_CP026178.1_4516134_4518900_+	COG3933, COG3933, Transcriptional antiterminator [Transcription]
GCF_002903025.1_ASM290302v1	NZ_CP026178	Klebsiella pneumoniae strain KPNIH49 chromosome, complete genome	2	4841492-4841631	2	CRISPRCasFinder	no	DEDDh	DinG,cas3,csa3,RT,DEDDh,WYL	Unclear	CTGCTGCTTCAGTTTTGTAGGCCGGGTAAGGCGCCAGCCGCCACCCGGCA	50	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,csa3,RT,DEDDh,WYL,TnsE_C	NA,NA	NA|194aa|up_9|NZ_CP026178.1_4832857_4833439_+	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|256aa|up_8|NZ_CP026178.1_4833513_4834281_+	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|247aa|up_7|NZ_CP026178.1_4834251_4834992_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|448aa|up_6|NZ_CP026178.1_4835403_4836747_+	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|413aa|up_5|NZ_CP026178.1_4836750_4837989_+	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|265aa|up_4|NZ_CP026178.1_4837981_4838776_+	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|213aa|up_3|NZ_CP026178.1_4838768_4839407_+	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|199aa|up_2|NZ_CP026178.1_4839413_4840010_+	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|408aa|up_1|NZ_CP026178.1_4840022_4841246_+	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|72aa|up_0|NZ_CP026178.1_4841248_4841464_+	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|287aa|down_0|NZ_CP026178.1_4841686_4842547_-	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|352aa|down_1|NZ_CP026178.1_4842706_4843762_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|151aa|down_2|NZ_CP026178.1_4843764_4844217_+	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|486aa|down_3|NZ_CP026178.1_4844259_4845717_-	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|153aa|down_4|NZ_CP026178.1_4845974_4846433_+	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|415aa|down_5|NZ_CP026178.1_4846538_4847783_+	PRK05077, frsA, esterase FrsA	NA|133aa|down_6|NZ_CP026178.1_4847840_4848239_+	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|231aa|down_7|NZ_CP026178.1_4848324_4849017_-	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|467aa|down_8|NZ_CP026178.1_4849062_4850463_-	PRK10197, PRK10197, GABA permease	NA|428aa|down_9|NZ_CP026178.1_4850612_4851896_-	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase
GCF_002903025.1_ASM290302v1	NZ_CP026178	Klebsiella pneumoniae strain KPNIH49 chromosome, complete genome	3	5302394-5302662	1	PILER-CR	no		DinG,cas3,csa3,RT,DEDDh,WYL	Orphan	CGCGTACCCGGCCTGATGCCCGGTGGCGGCTGCGCCTTACCGGGCCTACGGTAC	54	1	1	5302565-5302624	NZ_CP026178.1_5302667-5302726	NA	2	2	Orphan	DinG,cas3,csa3,RT,DEDDh,WYL,TnsE_C	NA,NA	NA|312aa|up_9|NZ_CP026178.1_5288677_5289613_+	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	NA|208aa|up_8|NZ_CP026178.1_5289664_5290288_-	PRK10251, PRK10251, enterobactin synthase subunit EntD	NA|743aa|up_7|NZ_CP026178.1_5290355_5292584_-	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor	NA|403aa|up_6|NZ_CP026178.1_5292843_5294052_+	PRK10439, PRK10439, enterobactin/ferric enterobactin esterase; Provisional	NA|68aa|up_5|NZ_CP026178.1_5294079_5294283_+	COG3251, COG3251, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1294aa|up_4|NZ_CP026178.1_5294293_5298175_+	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF	NA|265aa|up_3|NZ_CP026178.1_5298239_5299034_-	PRK10253, PRK10253, iron-enterobactin ABC transporter ATP-binding protein	NA|330aa|up_2|NZ_CP026178.1_5299030_5300020_-	PRK10440, PRK10440, iron-enterobactin ABC transporter permease	NA|336aa|up_1|NZ_CP026178.1_5300019_5301027_-	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease	NA|414aa|up_0|NZ_CP026178.1_5301139_5302381_+	PRK10489, PRK10489, enterobactin transporter EntS	NA|320aa|down_0|NZ_CP026178.1_5302756_5303716_-	PRK10957, PRK10957, iron-enterobactin transporter periplasmic binding protein; Provisional	NA|392aa|down_1|NZ_CP026178.1_5303904_5305080_+	PRK15016, PRK15016, isochorismate synthase EntC; Provisional	NA|536aa|down_2|NZ_CP026178.1_5305089_5306697_+	PRK10946, entE, (2,3-dihydroxybenzoyl)adenylate synthase	NA|284aa|down_3|NZ_CP026178.1_5306710_5307562_+	COG1535, EntB, Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|252aa|down_4|NZ_CP026178.1_5307561_5308317_+	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	NA|138aa|down_5|NZ_CP026178.1_5308317_5308731_+	PRK10254, PRK10254, proofreading thioesterase EntH	NA|702aa|down_6|NZ_CP026178.1_5309087_5311193_+	PRK15015, PRK15015, carbon starvation protein CstA	NA|66aa|down_7|NZ_CP026178.1_5311297_5311495_+	COG2879, COG2879, Uncharacterized small protein [Function unknown]	NA|135aa|down_8|NZ_CP026178.1_5311491_5311896_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|101aa|down_9|NZ_CP026178.1_5311870_5312173_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]
GCF_002903025.1_ASM290302v1	NZ_CP026178	Klebsiella pneumoniae strain KPNIH49 chromosome, complete genome	4	5319372-5319478	3	CRISPRCasFinder	no		DinG,cas3,csa3,RT,DEDDh,WYL	Orphan	TTTTTAGGGTGTGCTCCCTCTCCCT	25	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,csa3,RT,DEDDh,WYL,TnsE_C	NA,NA	NA|702aa|up_9|NZ_CP026178.1_5309087_5311193_+	PRK15015, PRK15015, carbon starvation protein CstA	NA|66aa|up_8|NZ_CP026178.1_5311297_5311495_+	COG2879, COG2879, Uncharacterized small protein [Function unknown]	NA|135aa|up_7|NZ_CP026178.1_5311491_5311896_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|101aa|up_6|NZ_CP026178.1_5311870_5312173_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|248aa|up_5|NZ_CP026178.1_5312356_5313100_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|363aa|up_4|NZ_CP026178.1_5313157_5314246_-	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|501aa|up_3|NZ_CP026178.1_5314409_5315912_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|333aa|up_2|NZ_CP026178.1_5315908_5316907_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|355aa|up_1|NZ_CP026178.1_5316927_5317992_+	cd06305, PBP1_methylthioribose_binding-like, similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily	NA|414aa|up_0|NZ_CP026178.1_5318093_5319335_+	COG5276, COG5276, Uncharacterized conserved protein [Function unknown]	NA|400aa|down_0|NZ_CP026178.1_5319513_5320713_-	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|343aa|down_1|NZ_CP026178.1_5320814_5321843_+	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase	NA|423aa|down_2|NZ_CP026178.1_5321903_5323172_-	pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch 2)	NA|453aa|down_3|NZ_CP026178.1_5323197_5324556_-	cd17312, MFS_OPA_SLC37, Organophosphate:Pi antiporter/Solute Carrier family 37 of the Major Facilitator Superfamily of transporters	NA|270aa|down_4|NZ_CP026178.1_5324666_5325476_-	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	NA|328aa|down_5|NZ_CP026178.1_5325597_5326581_-	cd06278, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	NA|413aa|down_6|NZ_CP026178.1_5326693_5327932_-	PRK09230, PRK09230, cytosine deaminase; Provisional	NA|412aa|down_7|NZ_CP026178.1_5327928_5329164_-	pfam07905, PucR, Purine catabolism regulatory protein-like family	NA|421aa|down_8|NZ_CP026178.1_5329160_5330423_-	PRK11017, codB, cytosine permease; Provisional	NA|203aa|down_9|NZ_CP026178.1_5330874_5331483_+	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase
GCF_002903025.1_ASM290302v1	NZ_CP026186	Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-3967, complete sequence	1	38316-38610	1	PILER-CR	no		TnsE_C,DinG,RT,DEDDh	Orphan	TCAGCACCTACCGGTGCGTTAGTCGTCGCATACAGTAGACTCCCGTTGTTTCTGCCCGGCA	61	0	0	NA	NA	NA	2	2	Orphan	DinG,cas3,csa3,RT,DEDDh,WYL,TnsE_C	NA|71aa|up_3|NZ_CP026186.1_33514_33727_-,NA|105aa|up_2|NZ_CP026186.1_34701_35016_+,NA|151aa|up_1|NZ_CP026186.1_35258_35711_-,NA|300aa|down_1|NZ_CP026186.1_41276_42176_-,NA|106aa|down_4|NZ_CP026186.1_47174_47492_-,NA|108aa|down_5|NZ_CP026186.1_47642_47966_-,NA|253aa|down_6|NZ_CP026186.1_47962_48721_-,NA|136aa|down_8|NZ_CP026186.1_49719_50127_-,NA|155aa|down_9|NZ_CP026186.1_50136_50601_-	NA|87aa|up_9|NZ_CP026186.1_27185_27446_-	pfam10749, DUF2534, Protein of unknown function (DUF2534)	NA|688aa|up_8|NZ_CP026186.1_27502_29566_-	TIGR01778, TonB-copper, TonB-dependent copper receptor	NA|140aa|up_7|NZ_CP026186.1_29648_30068_-	pfam11162, DUF2946, Protein of unknown function (DUF2946)	NA|341aa|up_6|NZ_CP026186.1_30434_31457_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|335aa|up_5|NZ_CP026186.1_31791_32796_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|93aa|up_4|NZ_CP026186.1_33142_33421_-	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|71aa|up_3|NZ_CP026186.1_33514_33727_-	NA	NA|105aa|up_2|NZ_CP026186.1_34701_35016_+	NA	NA|151aa|up_1|NZ_CP026186.1_35258_35711_-	NA	NA|312aa|up_0|NZ_CP026186.1_36212_37148_-	PRK10993, PRK10993, omptin family outer membrane protease	NA|374aa|down_0|NZ_CP026186.1_40029_41150_-	pfam13683, rve_3, Integrase core domain	NA|300aa|down_1|NZ_CP026186.1_41276_42176_-	NA	NA|85aa|down_2|NZ_CP026186.1_43643_43898_-	pfam05321, HHA, Haemolysin expression modulating protein	NA|379aa|down_3|NZ_CP026186.1_45972_47109_+	cd00799, INT_Cre_C, C-terminal catalytic domain of Cre recombinase (also called integrase)	NA|106aa|down_4|NZ_CP026186.1_47174_47492_-	NA	NA|108aa|down_5|NZ_CP026186.1_47642_47966_-	NA	NA|253aa|down_6|NZ_CP026186.1_47962_48721_-	NA	NA|320aa|down_7|NZ_CP026186.1_48717_49677_-	pfam05472, Ter, DNA replicatioN-terminus site-binding protein (Ter protein)	NA|136aa|down_8|NZ_CP026186.1_49719_50127_-	NA	NA|155aa|down_9|NZ_CP026186.1_50136_50601_-	NA
GCF_002903025.1_ASM290302v1	NZ_CP026186	Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-3967, complete sequence	2	221169-221441	1,1	CRT,CRISPRCasFinder	no	DinG,RT,DEDDh	TnsE_C,DinG,RT,DEDDh	Unclear	GTATTCCCCCCGNNTGCGGGGGTTATCGG,ACCCGCTGGCTGGAAGTATTCCCCCCG	29,27	0	0	NA	NA	NA:NA	4,1	4	Orphan	DinG,cas3,csa3,RT,DEDDh,WYL,TnsE_C	NA|132aa|up_9|NZ_CP026186.1_212448_212844_+,NA|136aa|up_8|NZ_CP026186.1_212853_213261_+,NA|137aa|up_7|NZ_CP026186.1_213290_213701_+,NA|264aa|up_4|NZ_CP026186.1_216128_216920_+,NA|236aa|up_1|NZ_CP026186.1_219359_220067_+,NA|242aa|down_5|NZ_CP026186.1_227269_227995_-	NA|132aa|up_9|NZ_CP026186.1_212448_212844_+	NA	NA|136aa|up_8|NZ_CP026186.1_212853_213261_+	NA	NA|137aa|up_7|NZ_CP026186.1_213290_213701_+	NA	NA|335aa|up_6|NZ_CP026186.1_214071_215076_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|138aa|up_5|NZ_CP026186.1_215652_216066_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|264aa|up_4|NZ_CP026186.1_216128_216920_+	NA	NA|189aa|up_3|NZ_CP026186.1_216922_217489_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	DinG|625aa|up_2|NZ_CP026186.1_217491_219366_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|236aa|up_1|NZ_CP026186.1_219359_220067_+	NA	NA|264aa|up_0|NZ_CP026186.1_220311_221103_+	pfam08317, Spc7, Spc7 kinetochore protein	RT|495aa|down_0|NZ_CP026186.1_221813_223298_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|141aa|down_1|NZ_CP026186.1_223708_224131_+	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	DEDDh|183aa|down_2|NZ_CP026186.1_224361_224910_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|187aa|down_3|NZ_CP026186.1_225980_226541_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|243aa|down_4|NZ_CP026186.1_226544_227273_-	cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A	NA|242aa|down_5|NZ_CP026186.1_227269_227995_-	NA	NA|396aa|down_6|NZ_CP026186.1_228004_229192_-	pfam02624, YcaO, YcaO cyclodehydratase, ATP-ad Mg2+-binding	NA|269aa|down_7|NZ_CP026186.1_229184_229991_-	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC	NA|285aa|down_8|NZ_CP026186.1_229992_230847_-	TIGR04424, Microcin_B17-processing_protein_McbB, McbB family protein	NA|70aa|down_9|NZ_CP026186.1_230905_231115_-	PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional
