assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002934895.1_ASM293489v1	NZ_CP026399	Escherichia coli strain ECONIH4 chromosome, complete genome	1	444534-444657	1	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,TnsE_C	NA,NA|30aa|down_7|NZ_CP026399.1_453553_453643_+	NA|471aa|up_9|NZ_CP026399.1_433989_435402_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP026399.1_435957_436167_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP026399.1_436621_437248_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP026399.1_437268_439371_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP026399.1_439374_440022_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP026399.1_440085_440754_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP026399.1_440750_441536_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP026399.1_441539_442352_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP026399.1_442363_443968_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP026399.1_444093_444399_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP026399.1_444971_446228_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP026399.1_446268_447642_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP026399.1_447856_448498_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP026399.1_448537_449686_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP026399.1_449976_451188_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP026399.1_451300_452233_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP026399.1_452229_453255_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP026399.1_453553_453643_+	NA	NA|390aa|down_8|NZ_CP026399.1_453808_454978_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP026399.1_455212_455794_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002934895.1_ASM293489v1	NZ_CP026399	Escherichia coli strain ECONIH4 chromosome, complete genome	2	1266174-1266265	2	CRISPRCasFinder	no		DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,TnsE_C	NA|51aa|up_9|NZ_CP026399.1_1255249_1255402_-,NA	NA|51aa|up_9|NZ_CP026399.1_1255249_1255402_-	NA	NA|1321aa|up_8|NZ_CP026399.1_1255513_1259476_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP026399.1_1259515_1260154_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP026399.1_1260441_1261533_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP026399.1_1261532_1262225_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP026399.1_1262236_1262623_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP026399.1_1262630_1263431_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP026399.1_1263440_1264031_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP026399.1_1264041_1264536_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP026399.1_1264556_1265885_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP026399.1_1266688_1267285_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP026399.1_1267305_1267533_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP026399.1_1267570_1268812_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|83aa|down_3|NZ_CP026399.1_1269094_1269343_-	PRK09784, PRK09784, YccE family protein	NA|295aa|down_4|NZ_CP026399.1_1269466_1270351_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_5|NZ_CP026399.1_1270610_1271531_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_6|NZ_CP026399.1_1271530_1271836_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_7|NZ_CP026399.1_1271928_1272528_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_8|NZ_CP026399.1_1272524_1275071_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_9|NZ_CP026399.1_1275070_1276243_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC
GCF_002934895.1_ASM293489v1	NZ_CP026399	Escherichia coli strain ECONIH4 chromosome, complete genome	3	1440116-1440263	3	CRISPRCasFinder	no		DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TTTCTAAGCTGCCTGTATGGCAGTGAAC	28	0	0	NA	NA	I-F	2	2	Orphan	DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,TnsE_C	NA,NA	NA|431aa|up_9|NZ_CP026399.1_1424984_1426277_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP026399.1_1426367_1427711_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP026399.1_1427721_1428333_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1356aa|up_6|NZ_CP026399.1_1428487_1432555_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP026399.1_1432689_1433184_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP026399.1_1433727_1434693_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP026399.1_1434815_1436582_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP026399.1_1436582_1438304_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP026399.1_1438345_1439050_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP026399.1_1439334_1439553_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP026399.1_1440477_1442754_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP026399.1_1442784_1443105_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP026399.1_1443427_1443652_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP026399.1_1443724_1445671_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP026399.1_1445667_1446783_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP026399.1_1446933_1447890_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP026399.1_1447886_1449545_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP026399.1_1449970_1450666_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP026399.1_1451160_1452060_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP026399.1_1452203_1453856_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_002934895.1_ASM293489v1	NZ_CP026399	Escherichia coli strain ECONIH4 chromosome, complete genome	4	1595226-1595370	4	CRISPRCasFinder	no		DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,TnsE_C	NA,NA	NA|330aa|up_9|NZ_CP026399.1_1583125_1584115_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP026399.1_1584511_1585420_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP026399.1_1585611_1587633_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP026399.1_1588210_1588888_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP026399.1_1588880_1589636_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP026399.1_1589622_1590777_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP026399.1_1590773_1591814_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP026399.1_1591900_1593190_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP026399.1_1593248_1593725_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP026399.1_1593876_1595160_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP026399.1_1595393_1597655_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP026399.1_1597837_1599271_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP026399.1_1599346_1600399_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP026399.1_1600582_1601536_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP026399.1_1601576_1602572_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP026399.1_1602726_1603545_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP026399.1_1603545_1604604_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP026399.1_1604606_1605296_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP026399.1_1605295_1606069_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP026399.1_1606235_1606385_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_002934895.1_ASM293489v1	NZ_CP026399	Escherichia coli strain ECONIH4 chromosome, complete genome	5	1826296-1826392	5	CRISPRCasFinder	no		DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,TnsE_C	NA,NA	NA|181aa|up_9|NZ_CP026399.1_1817236_1817779_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|537aa|up_8|NZ_CP026399.1_1817934_1819545_+	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|289aa|up_7|NZ_CP026399.1_1820016_1820883_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP026399.1_1820884_1821097_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP026399.1_1821204_1821726_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP026399.1_1821761_1823147_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP026399.1_1823320_1823815_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP026399.1_1823817_1824540_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP026399.1_1824657_1825167_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP026399.1_1825163_1826231_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP026399.1_1826425_1827319_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP026399.1_1827315_1828131_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP026399.1_1828141_1829401_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP026399.1_1829410_1831078_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP026399.1_1831395_1832445_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP026399.1_1832466_1833702_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP026399.1_1833712_1834498_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NZ_CP026399.1_1834625_1835771_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP026399.1_1835792_1837094_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP026399.1_1837150_1838512_-	PRK08044, PRK08044, allantoinase AllB
GCF_002934895.1_ASM293489v1	NZ_CP026399	Escherichia coli strain ECONIH4 chromosome, complete genome	6	2309633-2309764	6	CRISPRCasFinder	no		DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	AATGCAGACTAACCCGCAGATCCAGCAGCGAAGAGA	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,TnsE_C	NA,NA	NA|309aa|up_9|NZ_CP026399.1_2295745_2296672_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|221aa|up_8|NZ_CP026399.1_2296780_2297443_+	PRK10437, PRK10437, carbonic anhydrase; Provisional	NA|179aa|up_7|NZ_CP026399.1_2297483_2298020_-	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional	NA|797aa|up_6|NZ_CP026399.1_2298225_2300616_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|517aa|up_5|NZ_CP026399.1_2300817_2302368_-	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|116aa|up_4|NZ_CP026399.1_2302533_2302881_+	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS)	NA|289aa|up_3|NZ_CP026399.1_2302986_2303853_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|265aa|up_2|NZ_CP026399.1_2303868_2304663_+	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|121aa|up_1|NZ_CP026399.1_2304700_2305063_-	PRK05248, PRK05248, hypothetical protein; Provisional	NA|866aa|up_0|NZ_CP026399.1_2305238_2307836_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|475aa|down_0|NZ_CP026399.1_2310114_2311539_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|631aa|down_1|NZ_CP026399.1_2311746_2313639_-	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|888aa|down_2|NZ_CP026399.1_2313653_2316317_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|255aa|down_3|NZ_CP026399.1_2316477_2317242_-	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|457aa|down_4|NZ_CP026399.1_2317785_2319156_+	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|285aa|down_5|NZ_CP026399.1_2319198_2320053_-	pfam17113, AmpE, Regulatory signalling modulator protein AmpE	NA|184aa|down_6|NZ_CP026399.1_2320049_2320601_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|298aa|down_7|NZ_CP026399.1_2320688_2321582_+	PRK09016, PRK09016, carboxylating nicotinate-nucleotide diphosphorylase	NA|147aa|down_8|NZ_CP026399.1_2321784_2322225_+	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|462aa|down_9|NZ_CP026399.1_2322234_2323620_+	PRK10436, PRK10436, hypothetical protein; Provisional
GCF_002934895.1_ASM293489v1	NZ_CP026399	Escherichia coli strain ECONIH4 chromosome, complete genome	7	2403749-2403878	7	CRISPRCasFinder	no		DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCAT	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,TnsE_C	NA,NA	NA|96aa|up_9|NZ_CP026399.1_2392739_2393027_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_CP026399.1_2393023_2394310_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_CP026399.1_2394360_2395302_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_CP026399.1_2395316_2396087_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_CP026399.1_2396560_2398075_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_CP026399.1_2398105_2399248_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP026399.1_2399376_2400594_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP026399.1_2400667_2402221_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP026399.1_2402329_2403115_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP026399.1_2403120_2403711_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP026399.1_2403919_2404315_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP026399.1_2404575_2407797_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP026399.1_2407814_2408963_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP026399.1_2409418_2410240_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP026399.1_2410406_2411321_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP026399.1_2411386_2412337_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP026399.1_2412338_2412788_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP026399.1_2412912_2413407_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP026399.1_2413406_2416223_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP026399.1_2416265_2417207_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_002934895.1_ASM293489v1	NZ_CP026399	Escherichia coli strain ECONIH4 chromosome, complete genome	8	4285606-4286244	1,8,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACC,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	Unclear	DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,TnsE_C	NA|47aa|up_1|NZ_CP026399.1_4284315_4284456_-,NA	NA|919aa|up_9|NZ_CP026399.1_4271423_4274180_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP026399.1_4274236_4275538_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP026399.1_4275585_4277820_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP026399.1_4277897_4278146_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP026399.1_4278145_4278481_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP026399.1_4278551_4279343_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP026399.1_4279570_4281208_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP026399.1_4281295_4282594_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|NZ_CP026399.1_4284315_4284456_-	NA	NA|224aa|up_0|NZ_CP026399.1_4284594_4285266_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP026399.1_4286882_4288361_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP026399.1_4288387_4289665_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP026399.1_4289983_4290769_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP026399.1_4290838_4292293_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP026399.1_4292386_4293724_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP026399.1_4293701_4294481_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP026399.1_4294477_4295338_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP026399.1_4295485_4296061_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP026399.1_4296077_4296338_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP026399.1_4296328_4297600_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_002934895.1_ASM293489v1	NZ_CP026399	Escherichia coli strain ECONIH4 chromosome, complete genome	9	4311945-4313255	2,9,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	20,20,21	21	TypeI-E	DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,TnsE_C	NA,NA	NA|245aa|up_9|NZ_CP026399.1_4301944_4302679_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP026399.1_4302943_4303096_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP026399.1_4303289_4305989_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP026399.1_4306086_4307649_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP026399.1_4307645_4308182_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP026399.1_4308193_4309249_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP026399.1_4309259_4310006_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP026399.1_4309987_4310638_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP026399.1_4310634_4311558_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP026399.1_4311554_4311848_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP026399.1_4313275_4314313_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP026399.1_4314564_4315473_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP026399.1_4315474_4316902_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP026399.1_4316901_4317507_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP026399.1_4317556_4317880_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP026399.1_4318073_4318385_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP026399.1_4318403_4319114_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP026399.1_4319113_4319593_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP026399.1_4319589_4320639_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP026399.1_4320619_4321381_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002934895.1_ASM293489v1	NZ_CP026402	Escherichia coli strain ECONIH4 plasmid pECO-e618, complete sequence	1	6594-6676	1	CRISPRCasFinder	no			Orphan	TATGTATTACCGAGCGAATCTGT	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,RT,c2c9_V-U4,cas3,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,TnsE_C	NA|96aa|up_6|NZ_CP026402.1_525_813_+,NA|144aa|up_5|NZ_CP026402.1_809_1241_+,NA|79aa|up_3|NZ_CP026402.1_2723_2960_+,NA|227aa|up_0|NZ_CP026402.1_5636_6317_+,NA|65aa|down_0|NZ_CP026402.1_6810_7005_-,NA|212aa|down_2|NZ_CP026402.1_7963_8599_+,NA|197aa|down_3|NZ_CP026402.1_8591_9182_+,NA|123aa|down_4|NZ_CP026402.1_9172_9541_+,NA|231aa|down_5|NZ_CP026402.1_9847_10540_+,NA|79aa|down_6|NZ_CP026402.1_10744_10981_+,NA|404aa|down_7|NZ_CP026402.1_11032_12244_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|96aa|up_6|NZ_CP026402.1_525_813_+	NA	NA|144aa|up_5|NZ_CP026402.1_809_1241_+	NA	NA|173aa|up_4|NZ_CP026402.1_2023_2542_-	pfam07508, Recombinase, Recombinase	NA|79aa|up_3|NZ_CP026402.1_2723_2960_+	NA	NA|495aa|up_2|NZ_CP026402.1_3094_4579_+	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|152aa|up_1|NZ_CP026402.1_5017_5473_-	cd00569, HTH_Hin_like, Helix-turn-helix domain of Hin and related proteins	NA|227aa|up_0|NZ_CP026402.1_5636_6317_+	NA	NA|65aa|down_0|NZ_CP026402.1_6810_7005_-	NA	NA|209aa|down_1|NZ_CP026402.1_7114_7741_-	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|212aa|down_2|NZ_CP026402.1_7963_8599_+	NA	NA|197aa|down_3|NZ_CP026402.1_8591_9182_+	NA	NA|123aa|down_4|NZ_CP026402.1_9172_9541_+	NA	NA|231aa|down_5|NZ_CP026402.1_9847_10540_+	NA	NA|79aa|down_6|NZ_CP026402.1_10744_10981_+	NA	NA|404aa|down_7|NZ_CP026402.1_11032_12244_-	NA	NA|NA	NA	NA|NA	NA
