assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002945135.2_ASM294513v2	NZ_CP026580	Escherichia coli strain WCHEC005237 chromosome, complete genome	1	1083617-1083951	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCGA,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,30,28	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Unclear	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|47aa|up_1|NZ_CP026580.2_1082326_1082467_-,NA	NA|434aa|up_9|NZ_CP026580.2_1073023_1074325_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP026580.2_1074372_1076607_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP026580.2_1076684_1076933_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP026580.2_1076932_1077268_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP026580.2_1077338_1078130_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP026580.2_1078357_1079995_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP026580.2_1080082_1081381_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP026580.2_1081440_1082313_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP026580.2_1082326_1082467_-	NA	NA|224aa|up_0|NZ_CP026580.2_1082605_1083277_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP026580.2_1084588_1086067_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP026580.2_1086093_1087371_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP026580.2_1087689_1088475_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP026580.2_1088544_1089999_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|260aa|down_4|NZ_CP026580.2_1091406_1092186_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_5|NZ_CP026580.2_1092182_1093043_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_6|NZ_CP026580.2_1093190_1093766_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_7|NZ_CP026580.2_1093782_1094043_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_8|NZ_CP026580.2_1094033_1095305_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|down_9|NZ_CP026580.2_1095382_1095748_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCF_002945135.2_ASM294513v2	NZ_CP026580	Escherichia coli strain WCHEC005237 chromosome, complete genome	2	1109499-1110200	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,11,11	11	TypeI-E	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|571aa|up_9|NZ_CP026580.2_1097862_1099575_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP026580.2_1099649_1100384_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_CP026580.2_1100742_1103409_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|495aa|up_6|NZ_CP026580.2_1103847_1105332_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP026580.2_1105324_1105807_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP026580.2_1105819_1106911_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP026580.2_1106913_1107588_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP026580.2_1107574_1108174_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP026580.2_1108189_1109107_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP026580.2_1109108_1109393_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP026580.2_1110282_1111320_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP026580.2_1111571_1112480_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP026580.2_1112481_1113909_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP026580.2_1113908_1114514_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP026580.2_1114563_1114887_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP026580.2_1115080_1115392_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP026580.2_1115410_1116121_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP026580.2_1116120_1116600_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP026580.2_1116596_1117646_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP026580.2_1117626_1118388_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002945135.2_ASM294513v2	NZ_CP026580	Escherichia coli strain WCHEC005237 chromosome, complete genome	3	1605985-1606102	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|300aa|up_9|NZ_CP026580.2_1595468_1596368_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|NZ_CP026580.2_1596560_1597751_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|NZ_CP026580.2_1597747_1599007_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_6|NZ_CP026580.2_1598996_1600625_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|NZ_CP026580.2_1600897_1602256_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|NZ_CP026580.2_1602260_1603337_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|69aa|up_3|NZ_CP026580.2_1603378_1603585_-	PRK09729, PRK09729, hypothetical protein; Provisional	NA|217aa|up_2|NZ_CP026580.2_1603799_1604450_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP026580.2_1604503_1604758_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP026580.2_1604757_1605888_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP026580.2_1606121_1608407_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP026580.2_1609102_1612855_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP026580.2_1612982_1613705_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP026580.2_1613851_1616479_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP026580.2_1616627_1618316_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP026580.2_1618312_1618936_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1535aa|down_6|NZ_CP026580.2_1618869_1623474_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP026580.2_1623474_1625124_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP026580.2_1625128_1625905_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP026580.2_1625978_1627163_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_002945135.2_ASM294513v2	NZ_CP026580	Escherichia coli strain WCHEC005237 chromosome, complete genome	4	2213926-2214049	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|75aa|down_7|NZ_CP026580.2_2222634_2222859_-,NA|30aa|down_8|NZ_CP026580.2_2222945_2223035_+	NA|471aa|up_9|NZ_CP026580.2_2203380_2204793_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP026580.2_2205349_2205559_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP026580.2_2206013_2206640_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP026580.2_2206660_2208763_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP026580.2_2208766_2209414_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP026580.2_2209477_2210146_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP026580.2_2210142_2210928_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP026580.2_2210931_2211744_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP026580.2_2211755_2213360_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP026580.2_2213485_2213791_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP026580.2_2214363_2215620_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP026580.2_2215660_2217034_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP026580.2_2217248_2217890_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP026580.2_2217929_2219078_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP026580.2_2219368_2220580_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP026580.2_2220692_2221625_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP026580.2_2221621_2222647_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|NZ_CP026580.2_2222634_2222859_-	NA	NA|30aa|down_8|NZ_CP026580.2_2222945_2223035_+	NA	NA|390aa|down_9|NZ_CP026580.2_2223200_2224370_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCF_002945135.2_ASM294513v2	NZ_CP026580	Escherichia coli strain WCHEC005237 chromosome, complete genome	5	2883230-2883321	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|70aa|up_9|NZ_CP026580.2_2872306_2872516_-,NA	NA|70aa|up_9|NZ_CP026580.2_2872306_2872516_-	NA	NA|1321aa|up_8|NZ_CP026580.2_2872570_2876533_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP026580.2_2876572_2877211_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|383aa|up_6|NZ_CP026580.2_2877441_2878590_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP026580.2_2878589_2879282_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP026580.2_2879293_2879680_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP026580.2_2879687_2880488_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP026580.2_2880497_2881088_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP026580.2_2881098_2881593_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP026580.2_2881613_2882942_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP026580.2_2883744_2884341_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP026580.2_2884361_2884589_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP026580.2_2884626_2885868_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP026580.2_2886160_2887417_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP026580.2_2887677_2888598_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP026580.2_2888597_2888903_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP026580.2_2889054_2889654_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP026580.2_2889650_2892197_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP026580.2_2892196_2893369_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP026580.2_2893498_2894191_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002945135.2_ASM294513v2	NZ_CP026580	Escherichia coli strain WCHEC005237 chromosome, complete genome	6	3144726-3144870	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|60aa|up_1|NZ_CP026580.2_3143139_3143319_+,NA|70aa|down_9|NZ_CP026580.2_3155590_3155800_-	NA|303aa|up_9|NZ_CP026580.2_3134010_3134919_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_8|NZ_CP026580.2_3135110_3137132_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_7|NZ_CP026580.2_3137710_3138388_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_6|NZ_CP026580.2_3138380_3139136_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_5|NZ_CP026580.2_3139122_3140277_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_4|NZ_CP026580.2_3140273_3141314_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_3|NZ_CP026580.2_3141400_3142690_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_2|NZ_CP026580.2_3142748_3143225_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|60aa|up_1|NZ_CP026580.2_3143139_3143319_+	NA	NA|428aa|up_0|NZ_CP026580.2_3143376_3144660_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP026580.2_3144893_3147155_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP026580.2_3147337_3148771_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP026580.2_3148846_3149899_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP026580.2_3150082_3151036_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP026580.2_3151076_3152072_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP026580.2_3152226_3153045_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP026580.2_3153045_3154104_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP026580.2_3154106_3154796_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP026580.2_3154795_3155569_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|70aa|down_9|NZ_CP026580.2_3155590_3155800_-	NA
GCF_002945135.2_ASM294513v2	NZ_CP026580	Escherichia coli strain WCHEC005237 chromosome, complete genome	7	3394851-3394947	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|231aa|up_9|NZ_CP026580.2_3386646_3387339_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP026580.2_3387558_3388101_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP026580.2_3388571_3389438_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP026580.2_3389439_3389652_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP026580.2_3389759_3390281_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP026580.2_3390316_3391702_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP026580.2_3391875_3392370_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP026580.2_3392372_3393095_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP026580.2_3393212_3393722_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP026580.2_3393718_3394786_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP026580.2_3394980_3395874_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP026580.2_3395870_3396686_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP026580.2_3396696_3397956_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP026580.2_3397965_3399633_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP026580.2_3399949_3400999_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP026580.2_3401020_3402256_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP026580.2_3402266_3403052_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP026580.2_3403279_3404425_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP026580.2_3404446_3405748_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP026580.2_3405804_3407166_-	PRK08044, PRK08044, allantoinase AllB
GCF_002945135.2_ASM294513v2	NZ_CP026580	Escherichia coli strain WCHEC005237 chromosome, complete genome	8	3534989-3535133	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|66aa|down_5|NZ_CP026580.2_3538810_3539008_-	NA|357aa|up_9|NZ_CP026580.2_3520127_3521198_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP026580.2_3521290_3521872_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|605aa|up_7|NZ_CP026580.2_3521876_3523691_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP026580.2_3523849_3525223_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP026580.2_3525298_3526618_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP026580.2_3527024_3528320_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP026580.2_3528377_3529067_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP026580.2_3529256_3530459_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP026580.2_3530455_3533602_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP026580.2_3533727_3534912_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP026580.2_3535156_3536065_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP026580.2_3536189_3537101_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|94aa|down_2|NZ_CP026580.2_3537258_3537540_-	pfam10971, DUF2773, Protein of unknown function (DUF2773)	NA|95aa|down_3|NZ_CP026580.2_3537747_3538032_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP026580.2_3538103_3538781_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|66aa|down_5|NZ_CP026580.2_3538810_3539008_-	NA	NA|64aa|down_6|NZ_CP026580.2_3539038_3539230_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_7|NZ_CP026580.2_3539279_3539804_-	PRK03731, aroL, shikimate kinase AroL	NA|121aa|down_8|NZ_CP026580.2_3539986_3540349_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_9|NZ_CP026580.2_3540476_3541286_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed
GCF_002945135.2_ASM294513v2	NZ_CP026580	Escherichia coli strain WCHEC005237 chromosome, complete genome	9	4174350-4174499	9	CRISPRCasFinder	no	RT	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|120aa|up_9|NZ_CP026580.2_4163561_4163921_-,NA|195aa|up_8|NZ_CP026580.2_4163913_4164498_-,NA|213aa|up_6|NZ_CP026580.2_4165167_4165806_-,NA	NA|120aa|up_9|NZ_CP026580.2_4163561_4163921_-	NA	NA|195aa|up_8|NZ_CP026580.2_4163913_4164498_-	NA	NA|77aa|up_7|NZ_CP026580.2_4164559_4164790_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|213aa|up_6|NZ_CP026580.2_4165167_4165806_-	NA	NA|421aa|up_5|NZ_CP026580.2_4165835_4167098_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_4|NZ_CP026580.2_4167542_4168562_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP026580.2_4168689_4170192_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP026580.2_4170352_4171435_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP026580.2_4171434_4172535_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP026580.2_4172801_4174313_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP026580.2_4174666_4175110_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP026580.2_4175109_4177965_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP026580.2_4178016_4179204_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP026580.2_4179396_4179900_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP026580.2_4179945_4180362_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP026580.2_4180523_4181528_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP026580.2_4183450_4183903_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_7|NZ_CP026580.2_4184047_4184641_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_8|NZ_CP026580.2_4184711_4185425_+	PRK12742, PRK12742, SDR family oxidoreductase	NA|132aa|down_9|NZ_CP026580.2_4185555_4185951_+	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
GCF_002945135.2_ASM294513v2	NZ_CP026578	Escherichia coli strain WCHEC005237 plasmid pQnrS1_005237, complete sequence	1	49637-49766	1	CRISPRCasFinder	no	cas3	cas3	Unclear	AGACTACAAATAGACTACAATAA	23	0	0	NA	NA	NA	2	2	Unclear	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|61aa|up_7|NZ_CP026578.2_43826_44009_+,NA|67aa|up_2|NZ_CP026578.2_45521_45722_-,NA|129aa|down_0|NZ_CP026578.2_49845_50232_+,NA|64aa|down_1|NZ_CP026578.2_50240_50432_+,NA|475aa|down_3|NZ_CP026578.2_53445_54870_+,NA|86aa|down_5|NZ_CP026578.2_56296_56554_+	NA|705aa|up_9|NZ_CP026578.2_38492_40607_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|343aa|up_8|NZ_CP026578.2_42826_43855_+	cd00799, INT_Cre_C, C-terminal catalytic domain of Cre recombinase (also called integrase)	NA|61aa|up_7|NZ_CP026578.2_43826_44009_+	NA	NA|127aa|up_6|NZ_CP026578.2_44092_44473_-	TIGR01550, Protein_kinase_doc, death-on-curing family protein	NA|74aa|up_5|NZ_CP026578.2_44472_44694_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|131aa|up_4|NZ_CP026578.2_44766_45159_-	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|83aa|up_3|NZ_CP026578.2_45270_45519_-	pfam06440, DNA_pol3_theta, DNA polymerase III, theta subunit	NA|67aa|up_2|NZ_CP026578.2_45521_45722_-	NA	NA|47aa|up_1|NZ_CP026578.2_46144_46285_-	pfam15944, DUF4752, Domain of unknown function (DUF4752)	NA|235aa|up_0|NZ_CP026578.2_46275_46980_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|129aa|down_0|NZ_CP026578.2_49845_50232_+	NA	NA|64aa|down_1|NZ_CP026578.2_50240_50432_+	NA	NA|980aa|down_2|NZ_CP026578.2_50509_53449_+	PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional	NA|475aa|down_3|NZ_CP026578.2_53445_54870_+	NA	NA|308aa|down_4|NZ_CP026578.2_55101_56025_+	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|86aa|down_5|NZ_CP026578.2_56296_56554_+	NA	NA|131aa|down_6|NZ_CP026578.2_59024_59417_+	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	NA|295aa|down_7|NZ_CP026578.2_59554_60439_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|400aa|down_8|NZ_CP026578.2_60470_61670_-	cd17388, MFS_TetA, Tetracycline resistance protein TetA and related proteins of the Major Facilitator Superfamily of transporters	NA|226aa|down_9|NZ_CP026578.2_61748_62426_+	PRK13756, PRK13756, TetR family transcriptional regulator
