The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP026594	Clostridioides difficile strain 08-00495 chromosome, complete genome	4177956	285644	301830	4177956		Synechococcus_phage(23.08%)	14	NA	NA
WP_009888043.1|285644_286157_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.1	2.3e-83
WP_003425290.1|286606_287083_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
WP_003420966.1|287088_287787_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
WP_003425288.1|287798_289166_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
WP_003425286.1|289159_290236_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
WP_003436064.1|290229_290823_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
WP_009892582.1|290815_292348_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
WP_009888045.1|292358_293609_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_009888046.1|293633_297440_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.1	3.0e-31
WP_009888047.1|297645_298518_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	3.8e-14
WP_009888048.1|298626_299508_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	61.9	8.2e-97
WP_009888049.1|299544_300102_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.0	1.3e-47
WP_009888050.1|300139_301123_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.9	9.2e-81
WP_009888051.1|301161_301830_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	47.7	4.1e-24
>prophage 2
NZ_CP026594	Clostridioides difficile strain 08-00495 chromosome, complete genome	4177956	588703	659451	4177956	tRNA,transposase,protease,coat	Streptococcus_phage(33.33%)	55	NA	NA
WP_003425122.1|588703_589420_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003436985.1|589498_590809_+	methylase	NA	NA	NA	NA	NA
WP_003425127.1|590908_591445_+	signal peptidase I	NA	NA	NA	NA	NA
WP_003425129.1|591610_592147_+	signal peptidase I	NA	NA	NA	NA	NA
WP_009888346.1|592156_592912_+	TIM barrel protein	NA	NA	NA	NA	NA
WP_009888347.1|592985_594653_+	nucleoside kinase	NA	NA	NA	NA	NA
WP_003417962.1|595233_596163_+	glutaminase A	NA	NA	NA	NA	NA
WP_003417965.1|596260_596824_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_009888348.1|597311_598148_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.5	2.1e-30
WP_009888349.1|598399_599395_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_009888350.1|599651_600056_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
WP_009888351.1|601055_601970_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_009888352.1|602075_604313_+	ATP-binding protein	NA	A0A2H4UU76	Bodo_saltans_virus	32.7	9.9e-06
WP_025984766.1|604944_605562_+	endonuclease III	NA	NA	NA	NA	NA
WP_003429657.1|605755_606226_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_009888355.1|606261_607110_+	DegV family protein	NA	NA	NA	NA	NA
WP_009892666.1|607499_608504_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_009888358.1|608628_609741_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003439005.1|610163_610925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003417993.1|610927_611746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003439009.1|611925_612528_+	DUF445 family protein	NA	NA	NA	NA	NA
WP_009888359.1|613390_615310_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
WP_100882489.1|616739_616889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012816012.1|617245_618364_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	53.2	2.2e-110
WP_009888362.1|619361_620399_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_009888364.1|620391_621078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888365.1|621089_621410_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_009888366.1|621770_623111_+	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	38.8	2.4e-79
WP_009888368.1|623788_624358_-	hydrolase	NA	NA	NA	NA	NA
WP_009888369.1|624518_625769_-	MFS transporter	NA	NA	NA	NA	NA
WP_074014400.1|626060_626648_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009888371.1|626969_628430_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_003429639.1|628803_629409_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009888372.1|629411_631979_+	pyruvate, phosphate dikinase	NA	A0A1V0SGR7	Hokovirus	39.6	4.1e-48
WP_003437599.1|631971_632136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888376.1|633244_633520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429630.1|633539_633827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009892676.1|635381_636491_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	3.1e-109
WP_009888381.1|636555_638679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888382.1|638693_643904_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888383.1|644128_646228_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.8	2.2e-68
WP_009892678.1|646270_646666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438914.1|647726_647915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888386.1|648099_648540_-	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_009888387.1|648875_650189_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	41.0	1.6e-93
WP_009888388.1|650206_650743_+	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	70.3	4.2e-64
WP_009888389.1|651261_651483_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
WP_009888390.1|651482_651746_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
WP_003418062.1|651807_652380_+	manganese catalase family protein	NA	NA	NA	NA	NA
WP_009888391.1|653197_653731_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	50.0	7.0e-35
WP_009888392.1|653955_654135_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_012816016.1|654741_654990_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888395.1|655837_656251_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
WP_009888396.1|656325_656835_+	GrpB family protein	NA	NA	NA	NA	NA
WP_009888399.1|658341_659451_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	54.3	6.6e-112
>prophage 3
NZ_CP026594	Clostridioides difficile strain 08-00495 chromosome, complete genome	4177956	1403125	1466024	4177956	portal,tail,protease,integrase,plate,tRNA	Clostridium_phage(46.15%)	61	1408283:1408299	1469453:1469469
WP_003428224.1|1403125_1403860_+|protease	Clp protease	protease	NA	NA	NA	NA
WP_009889104.1|1403982_1406394_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
WP_009889105.1|1406396_1407455_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
WP_009892976.1|1407448_1408783_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
1408283:1408299	attL	AAAGAAGATATATTAAA	NA	NA	NA	NA
WP_009889106.1|1408769_1409312_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003428218.1|1409599_1410646_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
WP_003428216.1|1410821_1412363_+	ribonuclease Y	NA	NA	NA	NA	NA
WP_003438344.1|1412997_1414779_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_009889108.1|1414860_1415391_-	signal peptidase I	NA	NA	NA	NA	NA
WP_009889109.1|1415430_1416255_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_009889110.1|1416511_1417420_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_009889111.1|1417563_1419009_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
WP_003419561.1|1419319_1419772_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009889112.1|1420184_1421762_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_009892977.1|1421920_1422673_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011861180.1|1422811_1424152_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
WP_003438357.1|1424263_1425460_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_009889113.1|1425844_1426795_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_003438367.1|1426955_1427708_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
WP_009889114.1|1427799_1428576_-	exonuclease domain-containing protein	NA	NA	NA	NA	NA
WP_003428202.1|1428890_1430789_+	glutamine synthetase	NA	NA	NA	NA	NA
WP_003428201.1|1430916_1432038_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
WP_009889116.1|1432236_1432569_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012816112.1|1432555_1433614_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_009889118.1|1433606_1434677_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_003428196.1|1434778_1435315_+	lipoprotein	NA	NA	NA	NA	NA
WP_009889121.1|1435431_1436139_+	lantibiotic protection ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.0	3.6e-55
WP_009889122.1|1436140_1436857_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
WP_009889124.1|1436858_1437617_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
WP_009889126.1|1437760_1439149_+	two-component system sensor histidine kinase	NA	NA	NA	NA	NA
WP_003428191.1|1439224_1440046_-	pyridoxamine kinase	NA	NA	NA	NA	NA
WP_009892989.1|1440296_1441451_+	amidase domain-containing protein	NA	NA	NA	NA	NA
WP_003419624.1|1441633_1441834_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
WP_009889129.1|1442254_1442683_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_009889131.1|1442825_1443581_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_009889132.1|1443701_1444118_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003428186.1|1444281_1444788_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
WP_003428185.1|1444869_1445190_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
WP_003419641.1|1445358_1445556_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_009889133.1|1445660_1446101_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	4.6e-32
WP_009889135.1|1446349_1446793_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	7.6e-19
WP_009889137.1|1446797_1447862_+|portal	phage portal protein	portal	A0A1V0DZX4	Clostridioides_phage	52.8	2.6e-97
WP_003419646.1|1447875_1448304_+|tail	phage tail tube protein	tail	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
WP_009889139.1|1448417_1448864_+|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
WP_003419648.1|1448890_1449058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889141.1|1449057_1451511_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	61.0	6.1e-17
WP_009889143.1|1451510_1451933_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	70.4	2.2e-52
WP_009889145.1|1452214_1453744_+	cell wall XkdQ hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
WP_003438447.1|1453759_1454086_+	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
WP_003428161.1|1454085_1454514_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
WP_009889148.1|1454506_1455559_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFP3	Clostridium_phage	71.3	9.3e-140
WP_009889149.1|1455555_1456254_+	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	56.9	3.3e-48
WP_009889153.1|1456254_1457241_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
WP_009892995.1|1457262_1462440_+	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	28.3	8.2e-88
WP_009889155.1|1462456_1462810_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	4.2e-12
WP_003419670.1|1463072_1463333_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
WP_003419674.1|1463557_1464013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438466.1|1464240_1464660_-	helix-turn-helix transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
WP_003428146.1|1464958_1465168_+	helix-turn-helix transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
WP_003428145.1|1465187_1465409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889162.1|1465625_1466024_-	helix-turn-helix domain-containing protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
1469453:1469469	attR	TTTAATATATCTTCTTT	NA	NA	NA	NA
>prophage 4
NZ_CP026594	Clostridioides difficile strain 08-00495 chromosome, complete genome	4177956	1548716	1557261	4177956		Pandoravirus(33.33%)	10	NA	NA
WP_009889249.1|1548716_1549301_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	4.2e-57
WP_074014342.1|1549293_1550652_+	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	41.2	3.0e-37
WP_003438634.1|1550641_1551385_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_009889253.1|1551418_1552120_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429416.1|1552145_1552718_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
WP_012816129.1|1552771_1553575_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	28.6	2.4e-23
WP_009889257.1|1553585_1553951_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_009889259.1|1553943_1554450_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_009893063.1|1554430_1555216_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.0e-13
WP_009893065.1|1555470_1557261_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.8	5.6e-52
>prophage 5
NZ_CP026594	Clostridioides difficile strain 08-00495 chromosome, complete genome	4177956	1684675	1739806	4177956	portal,tail,holin,integrase,plate,terminase	Clostridium_phage(78.57%)	68	1678678:1678693	1687898:1687913
1678678:1678693	attL	ATATAAAAGAGCAGAT	NA	NA	NA	NA
WP_003429803.1|1684675_1685806_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	99.7	2.9e-216
WP_009888800.1|1685884_1686592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888801.1|1686604_1687474_-	protein kinase	NA	NA	NA	NA	NA
WP_003429804.1|1688093_1688600_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
1687898:1687913	attR	ATATAAAAGAGCAGAT	NA	NA	NA	NA
WP_009893126.1|1688675_1689224_-	helix-turn-helix domain-containing protein	NA	A0A0A8WJ60	Clostridium_phage	98.4	2.2e-92
WP_009888806.1|1689235_1689577_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	100.0	7.6e-59
WP_009893129.1|1689753_1689957_+	helix-turn-helix domain-containing protein	NA	A0A0A8WHR3	Clostridium_phage	100.0	3.7e-29
WP_009888810.1|1690004_1690814_+	phage antirepressor	NA	A0A0A8WIE3	Clostridium_phage	97.4	1.0e-146
WP_009888812.1|1690860_1691070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003433505.1|1691079_1691454_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
WP_009888813.1|1691529_1691727_+	helix-turn-helix transcriptional regulator	NA	A0A0A8WE47	Clostridium_phage	92.3	2.9e-26
WP_009888815.1|1691757_1692150_+	helix-turn-helix domain-containing protein	NA	A0A0A8WHS2	Clostridium_phage	93.0	9.6e-58
WP_003429817.1|1692130_1692280_+	hypothetical protein	NA	A0A0A8WIF8	Clostridium_phage	89.4	4.2e-14
WP_003433513.1|1692350_1692788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888818.1|1692799_1693966_+	DUF2800 domain-containing protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.5e-117
WP_009888819.1|1693980_1694316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429822.1|1694368_1694941_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA	NA
WP_003433516.1|1694963_1695536_+	DUF2815 family protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
WP_009888821.1|1695535_1697494_+	DNA polymerase	NA	A0A0A7RTL3	Clostridium_phage	69.1	7.8e-265
WP_009888822.1|1697505_1699923_+	virulence-associated protein E	NA	A0A0A7RTG3	Clostridium_phage	67.7	0.0e+00
WP_003433522.1|1700204_1700531_+	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.4	8.7e-20
WP_009888823.1|1700479_1701850_+	DEAD/DEAH box helicase	NA	A0A1S7FYY5	Listeria_phage	60.0	8.4e-157
WP_009888825.1|1702003_1702483_+	hypothetical protein	NA	I2E8Y5	Clostridium_phage	51.0	4.4e-36
WP_009888827.1|1703509_1704484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429834.1|1704504_1705014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888829.1|1705083_1705776_+	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	97.0	7.0e-120
WP_009888830.1|1705765_1707007_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	98.3	1.1e-243
WP_009888831.1|1707012_1708455_+|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	97.7	3.0e-274
WP_009893134.1|1708444_1709980_+	hypothetical protein	NA	X5JAI9	Clostridium_phage	71.9	2.5e-194
WP_009888832.1|1709981_1710230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888833.1|1710297_1710861_+	scaffold protein	NA	A0A0A8WFU8	Clostridium_phage	93.6	6.0e-85
WP_009888834.1|1710872_1711763_+	hypothetical protein	NA	X5J9Z5	Clostridium_phage	99.3	1.4e-165
WP_009888835.1|1711781_1712015_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	93.5	4.6e-31
WP_009888836.1|1712024_1712426_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
WP_003433540.1|1712419_1712767_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
WP_009893135.1|1712766_1713057_+	HK97 gp10 family phage protein	NA	A0A0A8WFV8	Clostridium_phage	96.7	4.1e-45
WP_009888838.1|1713166_1713973_+	hypothetical protein	NA	F8UBL7	Clostridium_phage	48.0	2.4e-47
WP_009888839.1|1714321_1714759_+	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	95.2	3.3e-75
WP_009888840.1|1714751_1714928_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	93.1	1.1e-21
WP_009893136.1|1714928_1716239_+	hypothetical protein	NA	X5JAJ1	Clostridium_phage	92.7	8.1e-234
WP_009888842.1|1716255_1716726_+|tail	phage tail tube protein	tail	A0A0A8WJ62	Clostridium_phage	81.3	1.3e-69
WP_009888843.1|1716784_1717612_+	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	48.3	1.8e-45
WP_003429853.1|1717683_1718124_+|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
WP_011861033.1|1718123_1718318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429855.1|1718464_1718626_+	hypothetical protein	NA	A0A0A8WE04	Clostridium_phage	84.3	1.2e-14
WP_003429858.1|1719962_1720151_+	hypothetical protein	NA	X5JAJ2	Clostridium_phage	96.8	2.2e-23
WP_009888845.1|1720269_1721136_+	hypothetical protein	NA	X5JAW1	Clostridium_phage	80.1	3.2e-130
WP_009888846.1|1721188_1721323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888847.1|1722000_1722528_+	DUF4352 domain-containing protein	NA	A0A0A8WJ63	Clostridium_phage	97.1	8.7e-62
WP_009888848.1|1722665_1723433_+	DUF4428 domain-containing protein	NA	X5JB37	Clostridium_phage	44.4	6.3e-45
WP_009893138.1|1723498_1725871_+	tape measure protein	NA	X5JAB7	Clostridium_phage	41.5	8.8e-146
WP_009888849.1|1725887_1726577_+	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	94.8	2.0e-119
WP_009893140.1|1726569_1728462_+	cell wall hydrolase	NA	A3QSB3	Clostridium_virus	94.8	0.0e+00
WP_009893142.1|1728475_1728736_+	DUF2577 domain-containing protein	NA	A0A0A8WJ65	Clostridium_phage	86.0	1.4e-33
WP_009888851.1|1728740_1729160_+	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	95.7	1.3e-71
WP_009888852.1|1729160_1730210_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFK0	Clostridium_phage	94.8	1.0e-186
WP_003433579.1|1730202_1730820_+	YmfQ family protein	NA	A0A0A8WII4	Clostridium_phage	98.0	8.8e-114
WP_009888853.1|1730831_1731857_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	87.8	9.1e-140
WP_009893144.1|1731873_1733400_+	hypothetical protein	NA	B6SBV0	Clostridium_virus	60.8	1.3e-89
WP_009889429.1|1733414_1733708_+	hypothetical protein	NA	E2ELK3	Clostridium_phage	77.9	2.2e-38
WP_009889431.1|1733707_1733890_+	hypothetical protein	NA	A3QSC3	Clostridium_virus	95.0	5.5e-24
WP_009889434.1|1733923_1734490_+	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	77.8	3.6e-37
WP_009889435.1|1734520_1734811_+	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	95.8	6.9e-45
WP_009889440.1|1734814_1735072_+|holin	holin	holin	A3QSC5	Clostridium_virus	100.0	1.1e-41
WP_003429958.1|1735332_1736196_+	Abi family protein	NA	A3QSC6	Clostridium_virus	99.7	8.4e-163
WP_009889444.1|1736274_1737087_+	N-acetylmuramoyl-L-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
WP_009893147.1|1737180_1739580_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
WP_003433687.1|1739620_1739806_-	hypothetical protein	NA	A0A0A8WHQ4	Clostridium_phage	62.1	7.6e-13
>prophage 6
NZ_CP026594	Clostridioides difficile strain 08-00495 chromosome, complete genome	4177956	3057037	3065990	4177956		Catovirus(50.0%)	8	NA	NA
WP_009891028.1|3057037_3058951_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
WP_003431768.1|3059034_3060126_-	glycosyltransferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
WP_021419400.1|3060131_3061427_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	43.6	3.7e-90
WP_003426498.1|3061452_3062205_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
WP_004454111.1|3062252_3063161_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003426502.1|3063182_3063932_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
WP_004454110.1|3063960_3065151_-	glycerophosphotransferase	NA	NA	NA	NA	NA
WP_009891033.1|3065150_3065990_-	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	26.3	5.3e-05
>prophage 7
NZ_CP026594	Clostridioides difficile strain 08-00495 chromosome, complete genome	4177956	3903430	3917262	4177956	portal,transposase	Clostridioides_phage(81.82%)	16	NA	NA
WP_009888243.1|3903430_3904570_+	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	91.8	4.9e-195
WP_009888245.1|3904902_3905478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888246.1|3905488_3905677_+	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	96.8	5.3e-22
WP_009888247.1|3905871_3906429_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	97.8	4.1e-94
WP_012816430.1|3906728_3907472_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	92.3	4.3e-131
WP_012816431.1|3907925_3908468_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	95.0	8.3e-92
WP_009888248.1|3908562_3909768_+|portal	phage portal protein	portal	A0A1V0DZW8	Clostridioides_phage	95.0	2.0e-210
WP_009888251.1|3910296_3910740_-	hypothetical protein	NA	A0A1V0DZZ2	Clostridioides_phage	82.6	4.3e-62
WP_009888252.1|3910957_3911401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888253.1|3911422_3911740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012816432.1|3911929_3912592_-	DUF4367 domain-containing protein	NA	A0A1V0DZZ4	Clostridioides_phage	76.2	4.4e-87
WP_009888255.1|3912623_3913166_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1V0DZZ1	Clostridioides_phage	96.7	3.8e-89
WP_009888256.1|3913405_3913588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888257.1|3913615_3914227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012816433.1|3914703_3915918_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	7.9e-50
WP_003437815.1|3916104_3917262_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.5	8.4e-17
>prophage 8
NZ_CP026594	Clostridioides difficile strain 08-00495 chromosome, complete genome	4177956	4088987	4104410	4177956		Streptococcus_phage(92.31%)	20	NA	NA
WP_009892195.1|4088987_4089311_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	73.5	1.7e-39
WP_009892197.1|4089325_4089709_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	6.3e-38
WP_009892199.1|4089804_4090218_+	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_009892201.1|4090324_4090783_+	glyoxalase	NA	NA	NA	NA	NA
WP_009892206.1|4090807_4091350_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
WP_009892207.1|4091406_4091913_+	YcxB family protein	NA	NA	NA	NA	NA
WP_012816450.1|4092022_4093417_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	66.8	1.3e-178
WP_009892210.1|4093696_4094818_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	62.7	1.3e-134
WP_009892216.1|4094824_4094959_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_006354966.1|4094959_4095181_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	1.2e-28
WP_009892220.1|4095500_4096139_+	chloramphenicol acetyltransferase CAT	NA	G3CFL0	Escherichia_phage	35.3	7.6e-36
WP_009892222.1|4096215_4096404_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009892224.1|4096424_4096922_+	conjugal transfer protein	NA	A0A1S5SF25	Streptococcus_phage	41.2	1.3e-27
WP_009892226.1|4096937_4097441_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	47.6	4.4e-39
WP_153300386.1|4097403_4097544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009892227.1|4097553_4097943_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.8	8.1e-49
WP_009892228.1|4097929_4100362_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
WP_009892229.1|4100361_4102497_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	58.6	1.3e-177
WP_009892230.1|4102493_4103501_+	C40 family peptidase	NA	A0A1S5SEZ8	Streptococcus_phage	67.3	6.4e-130
WP_009892232.1|4103516_4104410_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	53.0	1.6e-79
