The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP026647	Vibrio cholerae O1 biovar El Tor strain HC1037 chromosome I, complete sequence	3015116	51695	105858	3015116	integrase,tRNA,protease,transposase	Bacillus_phage(25.0%)	45	38993:39008	114933:114948
38993:39008	attL	GGTTTTTCACGTTTAA	NA	NA	NA	NA
WP_000146472.1|51695_52883_+|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_001890498.1|52950_54414_-	serine-type D-Ala-D-Ala carboxypeptidase	NA	NA	NA	NA	NA
WP_001883445.1|54493_55546_-	porin OmpU	NA	NA	NA	NA	NA
WP_001883448.1|56073_56547_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_001054291.1|56623_56920_-	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA	NA
WP_000043220.1|57039_57669_+	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA	NA
WP_001883452.1|57769_59725_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	A0A0P0BXI2	Ostreococcus_lucimarinus_virus	44.4	2.4e-120
WP_000913082.1|59791_60628_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.6	3.2e-18
WP_001281065.1|60653_61994_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_000495557.1|62250_62586_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_000147148.1|63016_63472_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_000031601.1|63490_64978_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000192207.1|65002_67699_+	translation initiation factor IF-2	NA	NA	NA	NA	NA
WP_001123656.1|67800_68199_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000124044.1|68198_69137_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000055654.1|69278_69548_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_000462070.1|69910_72040_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_001883460.1|72155_73067_+	lipoprotein NlpI	NA	NA	NA	NA	NA
WP_001883461.1|73153_73573_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000981941.1|73619_74957_+	sodium-coupled multidrug efflux MATE transporter VcrM	NA	NA	NA	NA	NA
WP_000872504.1|75009_75888_-	U32 family peptidase	NA	NA	NA	NA	NA
WP_000421327.1|75899_76913_-	U32 family peptidase	NA	NA	NA	NA	NA
WP_001111411.1|77020_79075_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA	NA
WP_000932672.1|79307_79835_+	SCP2 domain-containing protein	NA	NA	NA	NA	NA
WP_001883466.1|79770_80322_+	N-acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	32.2	1.5e-19
WP_000953212.1|80432_80840_+	DNA polymerase III subunit psi	NA	NA	NA	NA	NA
WP_001883468.1|80800_81286_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_000160066.1|81274_83332_-	EAL domain-containing protein	NA	A0A127AWB9	Bacillus_phage	34.3	6.9e-14
WP_001910883.1|83535_83634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000127615.1|84072_84261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000211147.1|84406_86425_+	DNA mismatch repair protein	NA	NA	NA	NA	NA
WP_001218618.1|86554_87796_-|integrase	integrase family protein	integrase	A0A291AWU1	Escherichia_phage	39.8	1.3e-76
WP_001995600.1|87797_88067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000497807.1|88069_89044_-	ParM/StbA family protein	NA	NA	NA	NA	NA
WP_000348524.1|89508_89952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000985631.1|92125_95104_+|transposase	Tn3 family transposase	transposase	NA	NA	NA	NA
WP_001120888.1|95521_97015_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_001447541.1|97045_97930_+	DUF3363 domain-containing protein	NA	NA	NA	NA	NA
WP_000214119.1|98146_99361_+	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	4.2e-19
WP_001255015.1|99388_99694_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001120891.1|99805_100345_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000480968.1|100316_101153_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
WP_001082316.1|101152_101956_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	Q75ZG1	Hepacivirus	34.3	3.8e-24
WP_001043260.1|102016_102832_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA	NA
WP_001122813.1|104646_105858_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	51.4	4.2e-51
114933:114948	attR	GGTTTTTCACGTTTAA	NA	NA	NA	NA
>prophage 2
NZ_CP026647	Vibrio cholerae O1 biovar El Tor strain HC1037 chromosome I, complete sequence	3015116	262444	269637	3015116		Faustovirus(16.67%)	9	NA	NA
WP_000775253.1|262444_263659_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
WP_000331703.1|263695_264079_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000301571.1|264139_264463_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_001105747.1|264511_265027_+	co-chaperone HscB	NA	NA	NA	NA	NA
WP_001196560.1|265050_266901_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001124187.1|266914_267253_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_000872176.1|267301_267496_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_000107237.1|267715_269005_+	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_001162850.1|269208_269637_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
>prophage 3
NZ_CP026647	Vibrio cholerae O1 biovar El Tor strain HC1037 chromosome I, complete sequence	3015116	1024987	1041651	3015116	transposase	Vibrio_phage(44.44%)	21	NA	NA
WP_000593523.1|1024987_1025362_-	cholera enterotoxin binding subunit CtxB	NA	B9V4E7	Vibrio_virus	100.0	1.0e-64
WP_001881225.1|1025358_1026135_-	cholera enterotoxin catalytic subunit CtxA	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
WP_000021616.1|1026240_1027440_-	zonula occludens toxin ZOT	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
WP_000979342.1|1027436_1027730_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_001881237.1|1027726_1029010_-	hypothetical protein	NA	A0A142I701	Vibrio_phage	100.0	9.1e-222
WP_000493022.1|1029020_1029269_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001888513.1|1029404_1029785_-	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	4.0e-69
WP_000743997.1|1029762_1030842_-	hypothetical protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000693566.1|1030967_1031306_+	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000053920.1|1031817_1032042_-	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
WP_010895442.1|1032135_1032510_-	hypothetical protein	NA	B9V3G5	Vibrio_virus	100.0	1.2e-68
WP_000743997.1|1032487_1033567_-	hypothetical protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000693566.1|1033692_1034031_+	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000170634.1|1034520_1035105_-	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
WP_001161489.1|1035097_1035265_-	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_001052673.1|1035342_1036035_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001881265.1|1036164_1036449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002003155.1|1036453_1038019_-	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	3.9e-57
WP_001265358.1|1038180_1038747_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_086026889.1|1039055_1040277_+|transposase	IS3-like element ISVch4 family transposase	transposase	Q716C2	Shigella_phage	65.1	1.5e-117
WP_001122813.1|1040439_1041651_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	51.4	4.2e-51
>prophage 4
NZ_CP026647	Vibrio cholerae O1 biovar El Tor strain HC1037 chromosome I, complete sequence	3015116	1876678	1883295	3015116		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000864130.1|1876678_1877149_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
WP_001122865.1|1877413_1878523_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000493874.1|1878563_1879217_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001131994.1|1879221_1880325_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000543544.1|1880350_1880800_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_001890340.1|1880899_1882153_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000210573.1|1882161_1883295_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
>prophage 5
NZ_CP026647	Vibrio cholerae O1 biovar El Tor strain HC1037 chromosome I, complete sequence	3015116	2957091	2964354	3015116		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_001883363.1|2957091_2957883_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.6	8.4e-69
WP_000002982.1|2957875_2958502_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_000177568.1|2958501_2959437_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000116737.1|2959510_2960518_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_001894770.1|2960610_2963199_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_001279365.1|2963466_2964354_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
