The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP026670	Streptococcus pneumoniae strain endophthalmitis isolate 335 chromosome, complete genome	2221315	24244	33082	2221315	integrase	Streptococcus_phage(76.92%)	15	26304:26319	32557:32572
WP_000205044.1|24244_25531_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	37.1	2.7e-72
WP_000291870.1|25731_26199_+	nucleoside deaminase	NA	NA	NA	NA	NA
26304:26319	attL	TTGTGTGCTCTTTTTT	NA	NA	NA	NA
WP_001106362.1|26407_27106_-|integrase	site-specific integrase	integrase	A0A1S5SDQ9	Streptococcus_phage	100.0	6.0e-127
WP_001814135.1|27195_27549_-	hypothetical protein	NA	U4KJ82	Streptococcus_phage	97.3	4.5e-54
WP_000401841.1|27603_28674_-	type I restriction enzyme HsdR N-terminal domain-containing protein	NA	A0A1S5SAB0	Streptococcus_phage	97.8	2.9e-181
WP_000170931.1|28690_29071_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A1S5SBG5	Streptococcus_phage	98.4	1.7e-67
WP_000285962.1|29083_29347_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5S8E8	Streptococcus_phage	100.0	1.2e-43
WP_000156419.1|29346_29580_-	hypothetical protein	NA	A0A1S5S8D5	Streptococcus_phage	96.1	8.9e-35
WP_000464160.1|29579_29948_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SBE7	Streptococcus_phage	100.0	1.4e-63
WP_001112859.1|30519_30711_+	DNA-binding protein	NA	A0A141DZR9	Streptococcus_phage	100.0	3.0e-28
WP_001247549.1|30733_30937_+	hypothetical protein	NA	A0A141E1R6	Streptococcus_phage	95.5	1.3e-29
WP_000024181.1|31091_31259_-	YjzC family protein	NA	NA	NA	NA	NA
WP_001209433.1|31863_32043_-	hypothetical protein	NA	Q3BLW4	Phage_SK137	96.6	3.5e-23
WP_001030863.1|32184_32334_-	hypothetical protein	NA	C5J952	Streptococcus_phage	95.9	9.1e-17
WP_000701992.1|32638_33082_+	dUTP diphosphatase	NA	Q2WG49	Clostridium_botulinum_D_phage	47.3	2.1e-29
32557:32572	attR	TTGTGTGCTCTTTTTT	NA	NA	NA	NA
>prophage 2
NZ_CP026670	Streptococcus pneumoniae strain endophthalmitis isolate 335 chromosome, complete genome	2221315	48355	59666	2221315		Synechococcus_phage(33.33%)	7	NA	NA
WP_000668272.1|48355_50509_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.0	3.6e-45
WP_000801611.1|50521_51871_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_000043310.1|52040_52748_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	1.3e-41
WP_000361217.1|52804_56530_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.8	1.6e-37
WP_000220632.1|56622_58065_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.1	5.7e-55
WP_000182575.1|58101_59124_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	1.2e-64
WP_000717506.1|59120_59666_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	7.4e-24
>prophage 3
NZ_CP026670	Streptococcus pneumoniae strain endophthalmitis isolate 335 chromosome, complete genome	2221315	107778	133162	2221315	transposase,bacteriocin,tRNA	Streptococcus_phage(60.0%)	24	NA	NA
WP_000436237.1|107778_109035_-|transposase	ISL3-like element IS1167A family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	99.0	4.4e-237
WP_000693348.1|109247_109460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000200892.1|109509_110142_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_000500038.1|110163_111036_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha	NA	NA	NA	NA	NA
WP_000838912.1|111044_111716_-	L-serine ammonia-lyase, iron-sulfur-dependent, subunit beta	NA	NA	NA	NA	NA
WP_000836442.1|111957_112545_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A288TY55	Enterococcus_phage	56.2	1.7e-26
WP_001861316.1|112597_112918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001230165.1|113348_113636_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000724257.1|113687_115796_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000571330.1|115792_116434_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	4.3e-23
WP_001038484.1|116640_117447_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_100064897.1|117412_117883_+	argininosuccinate synthase	NA	NA	NA	NA	NA
WP_001861316.1|118172_118493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000436237.1|119109_120366_-|transposase	ISL3-like element IS1167A family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	99.0	4.4e-237
WP_001814148.1|120679_120868_+|bacteriocin	SPH_0227 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_001814150.1|121030_121759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000770312.1|122893_123133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020901307.1|123117_123396_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	50.5	4.3e-20
WP_001282967.1|126258_127380_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000193610.1|127520_127976_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000220946.1|127985_129899_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_000331980.1|130277_131957_-	ribonuclease J	NA	NA	NA	NA	NA
WP_000639577.1|131958_132192_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_000977347.1|133009_133162_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	bacteriocin	NA	NA	NA	NA
>prophage 4
NZ_CP026670	Streptococcus pneumoniae strain endophthalmitis isolate 335 chromosome, complete genome	2221315	295710	353264	2221315	transposase,protease,holin	Streptococcus_phage(25.0%)	48	NA	NA
WP_001063398.1|295710_297816_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.6	2.6e-117
WP_000032551.1|298668_299151_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_000743617.1|299245_300730_-	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_001156826.1|300882_302490_+	alpha-glucosidase	NA	NA	NA	NA	NA
WP_001022228.1|302648_302822_+	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
WP_000091067.1|303558_305004_+	capsular polysaccharide biosynthesis protein Cps4A	NA	A0A1X9I5X1	Streptococcus_phage	59.4	2.0e-132
WP_000565369.1|305005_305737_+	capsular polysaccharide biosynthesis protein Cps4B	NA	NA	NA	NA	NA
WP_000664144.1|305745_306438_+	capsular polysaccharide biosynthesis protein CpsC	NA	A0A1X9I5E1	Streptococcus_phage	57.6	9.3e-64
WP_001142541.1|306447_307137_+	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	62.3	4.9e-73
WP_001003129.1|307151_308519_+	sugar transferase	NA	NA	NA	NA	NA
WP_000750326.1|308549_309728_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_001814163.1|310027_311221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000413826.1|311224_312196_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	31.6	2.3e-07
WP_001045980.1|312202_313435_+	glycosyltransferase family 61 protein	NA	NA	NA	NA	NA
WP_000049683.1|313436_314822_+	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_000636508.1|314829_315978_+	CDP-glycerol--glycerophosphate glycerophosphotransferase	NA	NA	NA	NA	NA
WP_000794266.1|316013_317042_+	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_000645462.1|317057_317762_+|holin	phosphocholine cytidylyltransferase family protein	holin	NA	NA	NA	NA
WP_000779205.1|317776_318610_+	HAD-IIA family hydrolase	NA	NA	NA	NA	NA
WP_000676145.1|318769_319639_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	63.9	2.4e-101
WP_000131451.1|319639_320233_+	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	NA	H9NC63	Sphingomonas_phage	33.1	3.9e-10
WP_000141499.1|320245_321295_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	44.5	8.3e-72
WP_000600912.1|321360_322212_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.4	1.1e-26
WP_000927991.1|322287_322722_+|transposase	transposase	transposase	A0A218MNE7	uncultured_virus	24.6	2.1e-05
WP_000842557.1|323779_325762_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001032454.1|326062_331366_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_001039987.1|331532_333692_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_000248774.1|333688_334285_-	Holliday junction resolvase RecU	NA	A0A1L2JY30	Aeribacillus_phage	33.9	1.5e-17
WP_000179549.1|334351_334879_+	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
WP_000200645.1|334948_335290_+	cell division regulator GpsB	NA	NA	NA	NA	NA
WP_000711414.1|335775_336933_+	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_000039255.1|336945_338340_+	mid-cell-anchored protein MapZ	NA	NA	NA	NA	NA
WP_000158793.1|338415_339840_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	2.1e-41
WP_000518008.1|339851_340541_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000771053.1|340639_341638_+|holin	choline-binding protein CbpJ	holin	NA	NA	NA	NA
WP_000765684.1|341755_342988_-	MFS transporter	NA	NA	NA	NA	NA
WP_000619581.1|344537_344867_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000163315.1|344988_345867_+	mevalonate kinase	NA	NA	NA	NA	NA
WP_000373457.1|345848_346802_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA	NA
WP_000562413.1|346788_347796_+	phosphomevalonate kinase	NA	NA	NA	NA	NA
WP_000210618.1|347779_348790_+	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
WP_001224637.1|348866_349565_+	cell wall-active antibiotics response protein	NA	NA	NA	NA	NA
WP_000743674.1|349561_350557_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000698434.1|350570_351203_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001808881.1|351203_351446_+	DNA alkylation repair protein	NA	NA	NA	NA	NA
WP_075218974.1|351370_351682_+	DNA alkylation repair protein	NA	NA	NA	NA	NA
WP_000754501.1|352122_352362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001100142.1|352442_353264_+|protease	trypsin-like serine protease	protease	NA	NA	NA	NA
>prophage 5
NZ_CP026670	Streptococcus pneumoniae strain endophthalmitis isolate 335 chromosome, complete genome	2221315	410976	472150	2221315	transposase,tRNA,bacteriocin	Klosneuvirus(16.67%)	58	NA	NA
WP_001815847.1|410976_411948_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_000280773.1|412202_413048_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000904591.1|413194_414256_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000260644.1|414603_416928_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.9	1.3e-114
WP_001811329.1|417294_417510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000384133.1|417839_418124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001809505.1|418735_418906_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_074186948.1|419665_419923_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_001043417.1|420047_421487_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000691685.1|421490_422840_-	Trk system potassium transporter TrkA	NA	NA	NA	NA	NA
WP_001063601.1|423027_423876_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA	NA
WP_000403162.1|423890_424439_+	ECF-type riboflavin transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000693286.1|424445_424703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000656555.1|424804_426487_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.4	7.7e-19
WP_001148103.1|426471_427302_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000181373.1|427494_427998_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000185828.1|428450_429014_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000678709.1|429027_429654_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000867297.1|429681_430071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000333647.1|430075_430525_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000418402.1|430652_431240_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_000105234.1|431629_433237_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	1.5e-141
WP_000026645.1|433795_435427_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_000795165.1|435719_440630_+	bacterial Ig-like domain-containing protein	NA	NA	NA	NA	NA
WP_001096743.1|440719_441916_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000119900.1|442051_442579_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000659553.1|442655_443012_+	transcriptional repressor GlnR	NA	NA	NA	NA	NA
WP_001122904.1|443048_444395_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_001808898.1|444490_444610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410533.1|444574_444724_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078135276.1|445154_446471_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000240090.1|446418_447027_-	restriction endonuclease subunit S	NA	A0A1V0SLK8	Klosneuvirus	30.1	3.9e-13
WP_000651177.1|447037_447835_-	tyrosine-type DNA invertase PsrA	NA	A0A0H4TI16	Erysipelothrix_phage	28.7	1.3e-21
WP_000187269.1|447891_449442_-	restriction endonuclease subunit S	NA	A0A1V0SKS6	Klosneuvirus	29.2	8.4e-12
WP_000029036.1|449441_450905_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_000229084.1|450917_453251_-	DEAD/DEAH box helicase family protein	NA	A0A097BY72	Enterococcus_phage	26.3	5.8e-25
WP_001088694.1|453858_454368_+	DUF2812 domain-containing protein	NA	NA	NA	NA	NA
WP_000255770.1|454531_455566_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_000046031.1|455592_456117_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_000034665.1|456596_458420_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.3e-133
WP_000114427.1|458421_458778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001066295.1|459179_460316_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	31.3	2.4e-24
WP_025169639.1|460627_460912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777753.1|461073_461361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001278301.1|461370_461781_-	HIT family protein	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
WP_000889923.1|461848_462580_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	9.0e-25
WP_000653774.1|462576_463626_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000132572.1|463793_464123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000876675.1|464398_464737_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001219120.1|464741_465479_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001017642.1|465492_466833_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000358815.1|466903_467032_-	quorum-sensing system pheromone BlpC	NA	NA	NA	NA	NA
WP_001069060.1|467088_468450_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_075270826.1|468460_470104_-	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	27.2	1.4e-41
WP_000205166.1|470030_470618_-	peptidase C39	NA	NA	NA	NA	NA
WP_001093259.1|470899_471097_+|bacteriocin	bacteriocin-like peptide BlpI	bacteriocin	NA	NA	NA	NA
WP_001093248.1|471563_471833_+|bacteriocin	bacteriocin-like peptide BlpJ	bacteriocin	NA	NA	NA	NA
WP_000379965.1|471901_472150_+|bacteriocin	bacteriocin-like peptide BlpK	bacteriocin	NA	NA	NA	NA
>prophage 6
NZ_CP026670	Streptococcus pneumoniae strain endophthalmitis isolate 335 chromosome, complete genome	2221315	832439	844258	2221315	holin	Streptococcus_phage(72.73%)	14	NA	NA
WP_001025704.1|832439_833348_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	3.1e-06
WP_000745389.1|833344_833806_+	signal peptidase II	NA	NA	NA	NA	NA
WP_000403199.1|833795_834683_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.0	1.7e-09
WP_000728276.1|834685_836569_+|holin	phosphorylcholine esterase CbpE	holin	Q332B9	Clostridium_botulinum_C_phage	22.9	1.2e-09
WP_078134437.1|836648_837779_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.9e-114
WP_000254684.1|837788_839051_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	64.3	4.2e-139
WP_000689706.1|839054_839852_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.2	8.0e-59
WP_000033397.1|840071_840710_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	68.1	1.3e-75
WP_000806714.1|840706_841597_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.7	4.9e-73
WP_000358228.1|841636_841954_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_001166870.1|841956_842826_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.4	3.8e-115
WP_001261449.1|843052_843571_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
WP_000345256.1|843679_843817_+	replication initiator protein A	NA	NA	NA	NA	NA
WP_000008691.1|843823_844258_+	replication initiator protein A	NA	A0A2P0VK56	Streptococcus_phage	40.0	4.6e-08
>prophage 7
NZ_CP026670	Streptococcus pneumoniae strain endophthalmitis isolate 335 chromosome, complete genome	2221315	1107342	1155569	2221315	transposase,protease,holin	Indivirus(21.43%)	39	NA	NA
WP_000792105.1|1107342_1108296_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000726258.1|1108468_1110634_+	ABC transporter substrate-binding protein/permease	NA	NA	NA	NA	NA
WP_001096313.1|1110633_1111374_+	amino acid ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	27.3	2.8e-18
WP_000096133.1|1111522_1113010_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	32.8	7.1e-69
WP_000522315.1|1113055_1114345_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_000763460.1|1114348_1115167_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000153026.1|1115166_1115961_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000280916.1|1115957_1119497_-	chromosome segregation protein SMC	NA	NA	NA	NA	NA
WP_000661487.1|1119487_1120186_-	ribonuclease III	NA	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	33.3	1.1e-24
WP_000931178.1|1120503_1121490_-	GMP reductase	NA	G3MBI2	Bacillus_virus	72.2	1.1e-137
WP_001814239.1|1121723_1122962_-	McrC family protein	NA	NA	NA	NA	NA
WP_001042410.1|1122948_1124862_-	McrB family protein	NA	K4I1H4	Acidithiobacillus_phage	33.7	1.8e-16
WP_000929151.1|1125808_1126168_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_000762432.1|1126171_1126441_-	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_001074723.1|1126437_1127475_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_000461585.1|1128599_1129256_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
WP_000638779.1|1129299_1129932_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_001237218.1|1130024_1130384_-	YbaN family protein	NA	NA	NA	NA	NA
WP_000179648.1|1130489_1132577_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	37.5	1.5e-104
WP_001812957.1|1132743_1133787_-	TIGR00341 family protein	NA	NA	NA	NA	NA
WP_000705306.1|1134675_1135524_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	39.5	4.2e-34
WP_000643971.1|1135619_1136309_-	NTP transferase domain-containing protein	NA	A0A127AW70	Bacillus_phage	45.0	3.4e-05
WP_000837609.1|1136320_1137199_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000411210.1|1137188_1138058_-|holin	choline kinase LicA	holin	NA	NA	NA	NA
WP_000609894.1|1138074_1139097_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_000638527.1|1139101_1139809_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000835899.1|1140144_1141632_+	type IV teichoic acid flippase TacF	NA	NA	NA	NA	NA
WP_000811874.1|1141641_1142445_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	27.1	5.3e-10
WP_001199652.1|1142446_1143256_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	30.3	9.1e-10
WP_001126409.1|1143530_1146707_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_000166701.1|1147018_1148098_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.9	6.3e-59
WP_001293838.1|1148147_1149071_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	31.7	5.1e-25
WP_000850024.1|1149089_1149611_-	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_000244450.1|1149845_1150451_-	endonuclease III	NA	NA	NA	NA	NA
WP_000773231.1|1150450_1150993_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_001812396.1|1151161_1151302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001155337.1|1151726_1152680_+|transposase	IS30-like element ISSpn8 family transposase	transposase	H7BWC8	unidentified_phage	34.9	8.1e-34
WP_001861318.1|1152961_1154521_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	27.5	9.3e-11
WP_000895733.1|1154669_1155569_-|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
>prophage 8
NZ_CP026670	Streptococcus pneumoniae strain endophthalmitis isolate 335 chromosome, complete genome	2221315	1171761	1208972	2221315	transposase,integrase,protease	Bacillus_phage(66.67%)	37	1182021:1182038	1219713:1219730
WP_001811052.1|1171761_1171920_-|transposase	transposase domain-containing protein	transposase	NA	NA	NA	NA
WP_000841826.1|1172514_1172955_-|transposase	transposase	transposase	A0A218MNE7	uncultured_virus	24.6	2.5e-06
WP_000152337.1|1173408_1173732_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_001136124.1|1173712_1173898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000251935.1|1174170_1174782_-	V-type ATP synthase subunit D	NA	NA	NA	NA	NA
WP_000111248.1|1174804_1176190_-	V-type ATP synthase subunit B	NA	NA	NA	NA	NA
WP_000191781.1|1176190_1177966_-	V-type ATP synthase subunit A	NA	NA	NA	NA	NA
WP_000387940.1|1178028_1178349_-	V-type ATP synthase subunit F	NA	NA	NA	NA	NA
WP_000380542.1|1178338_1179346_-	V-type ATPase subunit	NA	NA	NA	NA	NA
WP_000067171.1|1179410_1179992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000400484.1|1180025_1180502_-	V-type ATP synthase subunit K	NA	NA	NA	NA	NA
WP_001018350.1|1180517_1182509_-	V-type ATP synthase subunit I	NA	NA	NA	NA	NA
1182021:1182038	attL	TAATTTTTCCCACTTTAT	NA	NA	NA	NA
WP_000185365.1|1182498_1182822_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000691259.1|1182846_1183737_-	ROK family protein	NA	NA	NA	NA	NA
WP_000248712.1|1183893_1185003_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_000739357.1|1185042_1187265_-	exo-alpha-sialidase	NA	NA	NA	NA	NA
WP_000587140.1|1187266_1187725_-	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA	NA
WP_000537363.1|1187750_1189292_-	sodium:solute symporter	NA	NA	NA	NA	NA
WP_000654135.1|1189319_1190237_-	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
WP_000448316.1|1190261_1190951_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_000436478.1|1191722_1192979_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	92.8	2.5e-224
WP_001809909.1|1193089_1193701_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001165928.1|1194025_1194634_+	DUF624 domain-containing protein	NA	NA	NA	NA	NA
WP_087671856.1|1194868_1196220_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	50.6	6.5e-61
WP_000807141.1|1196515_1196653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000945302.1|1196786_1198106_-	membrane protein	NA	NA	NA	NA	NA
WP_000356590.1|1198108_1198849_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.8	7.0e-09
WP_001108416.1|1198863_1200471_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	22.0	6.6e-12
WP_001076599.1|1200467_1202408_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_000386151.1|1202440_1205050_-	lanthionine synthetase	NA	NA	NA	NA	NA
WP_000807141.1|1205228_1205366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000821287.1|1205567_1206155_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000840773.1|1206247_1206391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000566556.1|1206403_1206784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001814249.1|1206776_1207100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001168348.1|1207361_1207532_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000237019.1|1207784_1208972_-|integrase	site-specific integrase	integrase	A0A1B0T6A8	Bacillus_phage	29.6	5.2e-30
1219713:1219730	attR	TAATTTTTCCCACTTTAT	NA	NA	NA	NA
>prophage 9
NZ_CP026670	Streptococcus pneumoniae strain endophthalmitis isolate 335 chromosome, complete genome	2221315	1266819	1283038	2221315		Streptococcus_phage(93.75%)	18	NA	NA
WP_000420682.1|1266819_1267134_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|1267149_1267536_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813488.1|1267564_1268950_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000879507.1|1268952_1269105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000398284.1|1269127_1270333_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_001009056.1|1270375_1270597_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000342539.1|1270713_1271211_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000506270.1|1271185_1271692_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000331160.1|1271675_1274123_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_000769868.1|1276294_1277296_+	bifunctional lysozyme/C40 family peptidase	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_001224318.1|1277292_1278225_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_001814923.1|1278469_1278586_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691741.1|1278601_1280521_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A2K5B2A5	Erysipelothrix_phage	97.5	0.0e+00
WP_000336323.1|1280639_1280807_+	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_001227347.1|1280866_1281220_-	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000804885.1|1281724_1282147_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|1282143_1282374_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000814511.1|1282834_1283038_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
>prophage 10
NZ_CP026670	Streptococcus pneumoniae strain endophthalmitis isolate 335 chromosome, complete genome	2221315	1372415	1415667	2221315	transposase,tRNA,holin	Streptococcus_phage(20.0%)	47	NA	NA
WP_001814267.1|1372415_1372628_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000484476.1|1372636_1372942_-|transposase	IS66 family transposase zinc-finger binding domain-containing protein	transposase	NA	NA	NA	NA
WP_000691850.1|1372928_1373123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000152348.1|1373292_1373643_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_001136122.1|1373623_1373809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000065720.1|1374112_1375675_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.8	4.9e-20
WP_000936188.1|1375816_1376515_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000071674.1|1376557_1377454_-	EamA family transporter	NA	NA	NA	NA	NA
WP_000872215.1|1377462_1378398_-	serine hydrolase	NA	NA	NA	NA	NA
WP_001102210.1|1378394_1379120_-	CppA family protein	NA	NA	NA	NA	NA
WP_000290657.1|1379203_1379839_-|holin	1-alkyl-2-acetylglycerophosphocholine esterase	holin	A0A2K9L661	Tupanvirus	28.7	8.7e-08
WP_000972931.1|1379840_1380668_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000526284.1|1380689_1381025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000930000.1|1381025_1381742_-	CapA family protein	NA	A0A0N9SJ77	Staphylococcus_phage	30.7	3.0e-25
WP_001272961.1|1382254_1382866_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
WP_000855736.1|1382910_1383639_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000272304.1|1383677_1384589_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.5	1.0e-89
WP_000926600.1|1384654_1384879_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_000590986.1|1384956_1385700_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.0	1.6e-29
WP_001103449.1|1385699_1386500_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000889093.1|1386657_1387014_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
WP_001170346.1|1387026_1387539_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	55.6	1.3e-46
WP_000405832.1|1387538_1388033_-	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	52.1	1.9e-42
WP_000858730.1|1388167_1388614_+	DUF1836 domain-containing protein	NA	NA	NA	NA	NA
WP_001097986.1|1388610_1389258_+	hemolysin III family protein	NA	NA	NA	NA	NA
WP_000689945.1|1389278_1389860_-	pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA	NA	NA	NA	NA
WP_000138517.1|1389860_1390736_-	pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA	NA	NA	NA	NA
WP_000036789.1|1390887_1392267_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000175413.1|1392560_1393484_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_000915925.1|1393543_1394149_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	54.2	7.7e-54
WP_000673677.1|1394166_1395411_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	52.7	3.8e-55
WP_000371287.1|1395633_1395891_-	DUF896 family protein	NA	NA	NA	NA	NA
WP_000164779.1|1395932_1397969_-|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_000038750.1|1398228_1399146_-|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_000369575.1|1399164_1399926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001099689.1|1400198_1401041_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.4	9.0e-53
WP_048814490.1|1401154_1402546_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_001811065.1|1402780_1403158_-|transposase	PD-(D/E)XK nuclease family transposase	transposase	NA	NA	NA	NA
WP_000915899.1|1403372_1404350_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_000850582.1|1404346_1405429_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.3	2.4e-37
WP_001040724.1|1408399_1409596_-	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	29.6	7.3e-32
WP_001155339.1|1409759_1410713_-|transposase	IS30-like element ISSpn8 family transposase	transposase	H7BWC8	unidentified_phage	34.9	8.1e-34
WP_000348121.1|1411750_1412620_-	aquaporin family protein	NA	NA	NA	NA	NA
WP_000248992.1|1412843_1413365_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_001021423.1|1413322_1414429_-	MucBP domain-containing protein	NA	NA	NA	NA	NA
WP_000935666.1|1414539_1414794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000200308.1|1415133_1415667_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP026670	Streptococcus pneumoniae strain endophthalmitis isolate 335 chromosome, complete genome	2221315	1454070	1535354	2221315	integrase,capsid,tail,portal,protease,holin,tRNA,terminase	Streptococcus_phage(84.85%)	91	1461566:1461597	1539738:1539769
WP_000390785.1|1454070_1454820_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000689596.1|1454873_1455233_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000339024.1|1455234_1456635_-	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	NA	A0A1V0S9I2	Catovirus	44.6	2.7e-25
WP_000068664.1|1456929_1457169_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_000609607.1|1457200_1457671_-	single-stranded DNA-binding protein SsbA	NA	A0A2H4J1H8	uncultured_Caudovirales_phage	67.7	2.4e-55
WP_001151785.1|1457682_1457973_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_161801414.1|1458125_1459472_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	31.2	6.3e-56
WP_000565218.1|1459487_1459853_-	VOC family protein	NA	NA	NA	NA	NA
WP_000777782.1|1459845_1461033_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_000747267.1|1461029_1461518_-	DUF5590 domain-containing protein	NA	NA	NA	NA	NA
1461566:1461597	attL	ATACTCTTCGAAAATCTCTTCAAACCACGTCA	NA	NA	NA	NA
WP_000039618.1|1461838_1462387_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000682799.1|1462623_1467948_-	YSIRK signal domain/LPXTG anchor domain surface protein	NA	NA	NA	NA	NA
WP_001245198.1|1468163_1469648_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000697794.1|1469698_1470427_-	peroxide stress protein YaaA	NA	A0A1X9I5I0	Streptococcus_phage	39.4	1.2e-40
WP_000508271.1|1470505_1470670_-	YczI family protein	NA	NA	NA	NA	NA
WP_000822856.1|1470848_1472444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000412220.1|1472455_1472866_-	peptide deformylase	NA	A0A2I7R224	Vibrio_phage	32.2	1.3e-09
WP_001277408.1|1472981_1473773_-	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA	NA
WP_000032458.1|1473785_1476482_-	cation-translocating P-type ATPase	NA	M1I547	Acanthocystis_turfacea_Chlorella_virus	28.6	8.1e-71
WP_000813909.1|1476785_1477970_+	CDF family manganese efflux transporter MntE	NA	NA	NA	NA	NA
WP_001279155.1|1478112_1479984_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	31.3	4.6e-57
WP_001138813.1|1479980_1481165_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	31.7	4.0e-38
WP_000027902.1|1481176_1481944_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_000762070.1|1482209_1483058_-	DegV family protein	NA	NA	NA	NA	NA
WP_001050086.1|1483059_1483434_-	DUF1149 family protein	NA	NA	NA	NA	NA
WP_000521404.1|1483507_1484860_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_000742290.1|1484883_1485663_-	YbbR-like domain-containing protein	NA	NA	NA	NA	NA
WP_001011066.1|1485649_1486507_-	TIGR00159 family protein	NA	NA	NA	NA	NA
WP_000080998.1|1486642_1487611_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
WP_000350453.1|1487863_1488820_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	Q0R562	Streptococcus_phage	100.0	1.3e-145
WP_001186206.1|1488823_1489156_-|holin	phage holin	holin	A0A1S5S9U3	Streptococcus_phage	100.0	1.9e-51
WP_000687454.1|1489159_1489576_-|holin	phage holin family protein	holin	Q0R564	Streptococcus_phage	100.0	8.4e-68
WP_000922099.1|1489585_1489849_-	hypothetical protein	NA	Q0R565	Streptococcus_phage	100.0	1.0e-39
WP_000159973.1|1489908_1491987_-	hypothetical protein	NA	Q0R566	Streptococcus_phage	100.0	0.0e+00
WP_000927607.1|1491997_1497025_-|tail	phage tail protein	tail	Q0R567	Streptococcus_phage	90.6	0.0e+00
WP_000161549.1|1497026_1498541_-|tail	phage tail family protein	tail	A0A1S5SEJ1	Streptococcus_phage	100.0	2.0e-300
WP_000763178.1|1498537_1501819_-	tape measure protein	NA	Q0R569	Streptococcus_phage	100.0	0.0e+00
WP_000062049.1|1501811_1502381_-	hypothetical protein	NA	U4KJ63	Streptococcus_phage	100.0	8.4e-103
WP_000129838.1|1502393_1502882_-	hypothetical protein	NA	Q0R571	Streptococcus_phage	100.0	4.4e-84
WP_000198230.1|1502946_1503396_-	hypothetical protein	NA	A0A1S5SEC3	Streptococcus_phage	100.0	8.4e-82
WP_001208881.1|1503392_1503800_-|capsid	phage capsid protein	capsid	A0A1S5SEE3	Streptococcus_phage	100.0	3.2e-72
WP_001017359.1|1503799_1504144_-	hypothetical protein	NA	Q94M41	Streptococcus_phage	100.0	3.8e-58
WP_000565932.1|1504143_1504515_-|capsid	phage capsid protein	capsid	A0A1S5SDX7	Streptococcus_phage	100.0	8.0e-54
WP_000221834.1|1504504_1504897_-	hypothetical protein	NA	A0A1C9LXX3	Streptococcus_phage	100.0	1.2e-63
WP_001240344.1|1504939_1505173_-	hypothetical protein	NA	A0A1S5SEE1	Streptococcus_phage	100.0	6.8e-35
WP_001139818.1|1505183_1506065_-	hypothetical protein	NA	Q0R578	Streptococcus_phage	100.0	1.6e-161
WP_000896122.1|1506082_1506646_-	phage scaffolding protein	NA	A0A1S5SEM4	Streptococcus_phage	100.0	9.9e-80
WP_000730218.1|1506784_1507936_-|capsid	phage minor capsid protein	capsid	Q94M47	Streptococcus_phage	100.0	1.1e-218
WP_000169861.1|1507978_1508152_-	hypothetical protein	NA	A0A1S5SEA5	Streptococcus_phage	100.0	1.3e-22
WP_000051860.1|1508138_1509707_-|portal	phage portal protein	portal	Q94M49	Streptococcus_phage	100.0	1.1e-301
WP_000143806.1|1509719_1511030_-|terminase	PBSX family phage terminase large subunit	terminase	U4KJA9	Streptococcus_phage	100.0	1.8e-257
WP_001136857.1|1511019_1511475_-	hypothetical protein	NA	A0A141DZJ9	Streptococcus_phage	100.0	5.0e-74
WP_000057536.1|1511678_1512425_-	hypothetical protein	NA	Q8SBI3	Streptococcus_phage	100.0	4.4e-136
WP_000425577.1|1512405_1513500_-	DUF4417 domain-containing protein	NA	A0A1S5S8J8	Streptococcus_phage	100.0	1.8e-202
WP_000162611.1|1513565_1513958_-	hypothetical protein	NA	A0A1S5SED1	Streptococcus_phage	100.0	7.1e-69
WP_001067626.1|1513954_1514197_-	DUF3310 domain-containing protein	NA	Q0R588	Streptococcus_phage	100.0	5.6e-40
WP_000612390.1|1514256_1514676_-	hypothetical protein	NA	A0A1S5SDX2	Streptococcus_phage	100.0	1.1e-75
WP_158302876.1|1514690_1514867_-	hypothetical protein	NA	Q0R590	Streptococcus_phage	100.0	1.7e-22
WP_000194857.1|1514863_1515151_-	hypothetical protein	NA	A0A1S5SE60	Streptococcus_phage	100.0	8.6e-48
WP_001021764.1|1515150_1515648_-	DUF1642 domain-containing protein	NA	Q0R592	Streptococcus_phage	100.0	3.4e-92
WP_000969681.1|1515649_1515967_-	hypothetical protein	NA	Q0R593	Streptococcus_phage	100.0	1.0e-57
WP_000573750.1|1516015_1516222_-	hypothetical protein	NA	A0A1S5SDU5	Streptococcus_phage	100.0	1.1e-31
WP_000667209.1|1516223_1516625_-	hypothetical protein	NA	U4KJA0	Streptococcus_phage	100.0	1.9e-72
WP_001286809.1|1516635_1516848_-	hypothetical protein	NA	A0A1S5SEA6	Streptococcus_phage	100.0	1.7e-32
WP_000206142.1|1516864_1517602_-	hypothetical protein	NA	Q0R597	Streptococcus_phage	100.0	1.6e-133
WP_000358623.1|1517603_1518038_-	hypothetical protein	NA	U4KJ68	Streptococcus_phage	100.0	2.1e-66
WP_000161128.1|1518091_1518295_-	hypothetical protein	NA	U4KJ79	Streptococcus_phage	100.0	4.4e-30
WP_000670026.1|1518329_1519487_-	DNA cytosine methyltransferase	NA	Q0R5A1	Streptococcus_phage	100.0	2.7e-225
WP_000609575.1|1519512_1520058_-	single-stranded DNA-binding protein	NA	A0A1S5SEC1	Streptococcus_phage	99.4	8.7e-73
WP_001203349.1|1520047_1520224_-	hypothetical protein	NA	A0A1S5SE71	Streptococcus_phage	100.0	4.8e-25
WP_000237811.1|1520245_1521238_-	DUF1351 domain-containing protein	NA	A0A1S5SEK4	Streptococcus_phage	100.0	8.7e-180
WP_000774582.1|1521240_1521948_-	ERF family protein	NA	Q0R5A5	Streptococcus_phage	100.0	6.7e-118
WP_001134282.1|1521953_1522406_-	hypothetical protein	NA	A0A1S5SDR7	Streptococcus_phage	100.0	1.1e-81
WP_000717373.1|1522457_1522982_-	hypothetical protein	NA	Q0R5A7	Streptococcus_phage	100.0	4.4e-90
WP_000450965.1|1523062_1523329_-	hypothetical protein	NA	A0A1C9LX40	Streptococcus_phage	100.0	1.1e-41
WP_001814284.1|1523560_1523824_-	transcriptional regulator	NA	A0A1S5SDY1	Streptococcus_phage	100.0	2.6e-43
WP_001112906.1|1524001_1524193_-	hypothetical protein	NA	A0A1S5SDV2	Streptococcus_phage	100.0	4.6e-29
WP_000464163.1|1524489_1524852_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SDY5	Streptococcus_phage	100.0	1.7e-61
WP_000136430.1|1524873_1525254_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A1S5SE39	Streptococcus_phage	100.0	4.2e-66
WP_001020945.1|1525267_1525618_+	hypothetical protein	NA	Q9MBY8	Streptococcus_phage	100.0	7.3e-57
WP_000266853.1|1525736_1526864_+|integrase	site-specific integrase	integrase	Q0R5B4	Streptococcus_phage	100.0	1.0e-208
WP_000011276.1|1526951_1527863_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	100.0	2.3e-155
WP_001231086.1|1527859_1528837_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	100.0	1.2e-184
WP_000163035.1|1528833_1529724_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	6.7e-06
WP_001140412.1|1529775_1530156_-	RidA family protein	NA	NA	NA	NA	NA
WP_000422605.1|1530166_1530754_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_000106354.1|1530762_1531995_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.2	6.4e-132
WP_000442276.1|1532026_1532197_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000162437.1|1532196_1532703_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	43.8	4.6e-28
WP_000229856.1|1532832_1533351_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
WP_012386833.1|1533848_1535354_-|holin	choline binding-anchored murein hydrolase LytC	holin	NA	NA	NA	NA
1539738:1539769	attR	TGACGTGGTTTGAAGAGATTTTCGAAGAGTAT	NA	NA	NA	NA
>prophage 12
NZ_CP026670	Streptococcus pneumoniae strain endophthalmitis isolate 335 chromosome, complete genome	2221315	1827971	1835303	2221315		uncultured_Mediterranean_phage(33.33%)	10	NA	NA
WP_000167830.1|1827971_1828673_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	36.5	1.2e-34
WP_001108391.1|1828688_1828799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000777248.1|1829095_1830055_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	4.0e-57
WP_001193668.1|1830044_1831001_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_000764300.1|1830997_1831750_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	9.6e-14
WP_000858249.1|1831845_1832811_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000821640.1|1833035_1833278_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	1.3e-17
WP_001222228.1|1833277_1834000_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000105310.1|1833986_1834556_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
WP_000351907.1|1834574_1835303_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
>prophage 13
NZ_CP026670	Streptococcus pneumoniae strain endophthalmitis isolate 335 chromosome, complete genome	2221315	2025934	2096335	2221315	transposase,tRNA,protease	Bacillus_phage(25.0%)	55	NA	NA
WP_001277932.1|2025934_2027212_-|tRNA	glutamyl-tRNA synthetase	tRNA	NA	NA	NA	NA
WP_000355927.1|2033678_2034110_-	cytidine deaminase	NA	NA	NA	NA	NA
WP_000031090.1|2034123_2035584_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000018263.1|2035707_2037057_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000400702.1|2037043_2037223_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000124748.1|2037226_2037916_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA	NA
WP_000859856.1|2038054_2039821_-	multidrug efflux ABC transporter subunit PatB	NA	W8CYL7	Bacillus_phage	25.6	9.1e-39
WP_000908137.1|2040611_2042306_-	multidrug efflux ABC transporter subunit PatA	NA	G9BWD6	Planktothrix_phage	30.7	4.4e-14
WP_000963680.1|2042452_2044987_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	21.8	8.8e-35
WP_001231472.1|2045037_2045484_-	arginine repressor	NA	NA	NA	NA	NA
WP_001092739.1|2045619_2047311_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.3	1.6e-80
WP_000356602.1|2048159_2048636_+	cupin domain-containing protein	NA	A0A291ATU0	Pandoravirus	34.6	1.0e-16
WP_000166475.1|2048719_2049427_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.6	1.4e-38
WP_000833277.1|2049427_2050759_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.9	1.9e-33
WP_000669493.1|2050925_2051801_+	phosphate-binding protein	NA	NA	NA	NA	NA
WP_000595180.1|2051918_2052782_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_000049768.1|2052774_2053590_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_000536449.1|2053591_2054344_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	27.4	3.9e-15
WP_001245781.1|2054358_2055009_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000183464.1|2055076_2055493_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_001206584.1|2055615_2056056_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000415108.1|2056267_2057284_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000202235.1|2057305_2058205_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	51.0	3.6e-76
WP_000658498.1|2058276_2058954_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_000834301.1|2058937_2059477_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_000885102.1|2059488_2060619_-	N-acetyldiaminopimelate deacetylase	NA	NA	NA	NA	NA
WP_000127466.1|2060686_2061385_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA	NA	NA	NA	NA
WP_001812545.1|2061614_2062526_-	EamA family transporter	NA	NA	NA	NA	NA
WP_001180961.1|2062590_2065056_-	penicillin-binding protein	NA	NA	NA	NA	NA
WP_000546887.1|2065197_2066454_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A2C9CYK4	Yersinia_phage	41.5	1.5e-75
WP_000008795.1|2066531_2068595_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	26.2	1.3e-52
WP_000910909.1|2068596_2068875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001095515.1|2069026_2069875_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_001037912.1|2070496_2071069_+	membrane protein	NA	NA	NA	NA	NA
WP_000950152.1|2072112_2074371_-	glycogen/starch/alpha-glucan phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	37.5	5.7e-09
WP_000747291.1|2074396_2075914_-	4-alpha-glucanotransferase	NA	NA	NA	NA	NA
WP_000095485.1|2076463_2077735_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000414968.1|2077845_2079138_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_001065636.1|2079139_2079982_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_000938210.1|2080234_2081035_+	DUF1189 domain-containing protein	NA	NA	NA	NA	NA
WP_001145439.1|2081044_2082031_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_000436644.1|2082215_2083472_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	92.3	1.5e-224
WP_000814947.1|2084194_2085136_-	YitT family protein	NA	NA	NA	NA	NA
WP_000830880.1|2085113_2086877_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SJ84	Klosneuvirus	26.4	5.0e-13
WP_000832180.1|2087273_2087504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000771232.1|2087521_2088163_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000730285.1|2088174_2088897_-	DUF3169 family protein	NA	NA	NA	NA	NA
WP_001046141.1|2088899_2089097_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001176227.1|2089096_2089303_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_025169648.1|2089312_2089627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000775873.1|2089964_2091254_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000770608.1|2091331_2092579_-	transporter	NA	NA	NA	NA	NA
WP_001808790.1|2092795_2094142_+|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
WP_000434983.1|2094477_2095329_-	transcriptional regulator Rgg	NA	NA	NA	NA	NA
WP_001155337.1|2095381_2096335_-|transposase	IS30-like element ISSpn8 family transposase	transposase	H7BWC8	unidentified_phage	34.9	8.1e-34
>prophage 14
NZ_CP026670	Streptococcus pneumoniae strain endophthalmitis isolate 335 chromosome, complete genome	2221315	2199157	2207912	2221315		Bacillus_phage(33.33%)	9	NA	NA
WP_000510412.1|2199157_2199997_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	32.6	1.1e-15
WP_000835715.1|2199981_2200809_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	33.3	3.5e-17
WP_000712132.1|2200805_2201351_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001227958.1|2201361_2202183_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000170191.1|2202224_2203508_-	insulinase family protein	NA	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.0	8.4e-18
WP_000424267.1|2203504_2204755_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.3	4.6e-93
WP_000455903.1|2204913_2205282_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
WP_000266669.1|2205284_2206382_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_000073428.1|2206433_2207912_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
