assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002951635.1_ASM295163v1	NZ_CP014123	Klebsiella pneumoniae strain FDAARGOS_156 chromosome, complete genome	1	1095837-1095943	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	Orphan	TGTCCCACCCTGTACCACTTTTTTT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	NA|443aa|up_0|NZ_CP014123.1_1093957_1095286_-,NA|215aa|down_4|NZ_CP014123.1_1103829_1104474_-	NA|281aa|up_9|NZ_CP014123.1_1086778_1087621_+	pfam06560, GPI, Glucose-6-phosphate isomerase (GPI)	NA|188aa|up_8|NZ_CP014123.1_1087620_1088184_+	TIGR03127, RuMP_HxlB, 6-phospho 3-hexuloisomerase	NA|212aa|up_7|NZ_CP014123.1_1088207_1088843_+	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase	NA|401aa|up_6|NZ_CP014123.1_1088914_1090117_-	pfam13020, DUF3883, Domain of unknown function (DUF3883)	NA|338aa|up_5|NZ_CP014123.1_1090411_1091425_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|327aa|up_4|NZ_CP014123.1_1091435_1092416_-	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|125aa|up_3|NZ_CP014123.1_1092412_1092787_-	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]	NA|174aa|up_2|NZ_CP014123.1_1092783_1093305_-	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]	NA|115aa|up_1|NZ_CP014123.1_1093566_1093911_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|443aa|up_0|NZ_CP014123.1_1093957_1095286_-	NA	NA|72aa|down_0|NZ_CP014123.1_1098068_1098284_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|332aa|down_1|NZ_CP014123.1_1099073_1100069_+	pfam18144, SMODS, Second Messenger Oligonucleotide or Dinucleotide Synthetase domain	NA|311aa|down_2|NZ_CP014123.1_1100072_1101005_+	pfam18159, S_4TM, SMODS-associating 4TM effector domain	NA|647aa|down_3|NZ_CP014123.1_1101591_1103532_-	pfam14280, DUF4365, Domain of unknown function (DUF4365)	NA|215aa|down_4|NZ_CP014123.1_1103829_1104474_-	NA	NA|416aa|down_5|NZ_CP014123.1_1104475_1105723_-	PRK09692, PRK09692, integrase; Provisional	NA|161aa|down_6|NZ_CP014123.1_1106395_1106878_-	PRK05422, smpB, SsrA-binding protein SmpB	NA|159aa|down_7|NZ_CP014123.1_1106988_1107465_+	PRK10724, PRK10724, type II toxin-antitoxin system RatA family toxin	NA|97aa|down_8|NZ_CP014123.1_1107454_1107745_+	PRK01777, PRK01777, RnfH family protein	NA|114aa|down_9|NZ_CP014123.1_1107811_1108153_-	PRK11548, PRK11548, outer membrane protein assembly factor BamE
GCF_002951635.1_ASM295163v1	NZ_CP014123	Klebsiella pneumoniae strain FDAARGOS_156 chromosome, complete genome	2	2145125-2145701	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	Type I-E	GTCTTCCCCACATGCGTGGGGGTGTTTC,GTCTTCCCCACATGCGTGGGGGTGTTTC,GTCTTCCCCACATGCGTGGGGGTGTTTC	28,28,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	8,9,9	9	TypeI-E	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	NA,NA|372aa|down_8|NZ_CP014123.1_2155703_2156819_+	NA|196aa|up_9|NZ_CP014123.1_2130910_2131498_+	COG4332, COG4332, Uncharacterized protein conserved in bacteria [Function unknown]	NA|131aa|up_8|NZ_CP014123.1_2131626_2132019_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|411aa|up_7|NZ_CP014123.1_2132055_2133288_-	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|145aa|up_6|NZ_CP014123.1_2133853_2134288_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|400aa|up_5|NZ_CP014123.1_2134403_2135603_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|54aa|up_4|NZ_CP014123.1_2136894_2137056_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|717aa|up_3|NZ_CP014123.1_2137098_2139249_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|363aa|up_2|NZ_CP014123.1_2140877_2141966_+	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|590aa|up_1|NZ_CP014123.1_2142039_2143809_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_0|NZ_CP014123.1_2143801_2144872_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|down_0|NZ_CP014123.1_2146113_2148729_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|down_1|NZ_CP014123.1_2148732_2150256_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|down_2|NZ_CP014123.1_2150267_2150834_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|down_3|NZ_CP014123.1_2150826_2151474_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|down_4|NZ_CP014123.1_2151503_2152538_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|down_5|NZ_CP014123.1_2152550_2153267_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|down_6|NZ_CP014123.1_2153266_2154142_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|down_7|NZ_CP014123.1_2154119_2154407_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_8|NZ_CP014123.1_2155703_2156819_+	NA	NA|228aa|down_9|NZ_CP014123.1_2156829_2157513_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)
GCF_002951635.1_ASM295163v1	NZ_CP014123	Klebsiella pneumoniae strain FDAARGOS_156 chromosome, complete genome	3	2154455-2155466	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	Type I-E	GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTC	28,28,28	1	1	2154483-2154515	NZ_CP014123.1_1378661-1378629	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	14,16,16	16	TypeI-E	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	NA,NA|372aa|down_0|NZ_CP014123.1_2155703_2156819_+	NA|590aa|up_9|NZ_CP014123.1_2142039_2143809_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_8|NZ_CP014123.1_2143801_2144872_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|up_7|NZ_CP014123.1_2146113_2148729_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|up_6|NZ_CP014123.1_2148732_2150256_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|up_5|NZ_CP014123.1_2150267_2150834_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|up_4|NZ_CP014123.1_2150826_2151474_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|up_3|NZ_CP014123.1_2151503_2152538_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|up_2|NZ_CP014123.1_2152550_2153267_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|up_1|NZ_CP014123.1_2153266_2154142_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|up_0|NZ_CP014123.1_2154119_2154407_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_0|NZ_CP014123.1_2155703_2156819_+	NA	NA|228aa|down_1|NZ_CP014123.1_2156829_2157513_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|124aa|down_2|NZ_CP014123.1_2157573_2157945_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|252aa|down_3|NZ_CP014123.1_2158446_2159202_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|595aa|down_4|NZ_CP014123.1_2159204_2160989_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|447aa|down_5|NZ_CP014123.1_2160999_2162340_+	pfam00034, Cytochrom_C, Cytochrome c	NA|208aa|down_6|NZ_CP014123.1_2162423_2163047_+	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|220aa|down_7|NZ_CP014123.1_2163043_2163703_+	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|246aa|down_8|NZ_CP014123.1_2163752_2164490_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|77aa|down_9|NZ_CP014123.1_2164486_2164717_+	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]
GCF_002951635.1_ASM295163v1	NZ_CP014123	Klebsiella pneumoniae strain FDAARGOS_156 chromosome, complete genome	4	4437419-4437553	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	Orphan	GTTCGGTAGCCCGGCTAAGCGTAGCGCAAGCCGGGGGATGTCCCGG	46	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	NA|60aa|up_1|NZ_CP014123.1_4435919_4436099_+,NA|83aa|down_1|NZ_CP014123.1_4438623_4438872_-	NA|277aa|up_9|NZ_CP014123.1_4428619_4429450_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|178aa|up_8|NZ_CP014123.1_4429482_4430016_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|288aa|up_7|NZ_CP014123.1_4430086_4430950_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|200aa|up_6|NZ_CP014123.1_4430946_4431546_-	PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed	NA|291aa|up_5|NZ_CP014123.1_4431532_4432405_-	pfam05035, DGOK, 2-keto-3-deoxy-galactonokinase	NA|500aa|up_4|NZ_CP014123.1_4432414_4433914_-	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain	NA|131aa|up_3|NZ_CP014123.1_4434099_4434492_-	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|480aa|up_2|NZ_CP014123.1_4434502_4435942_-	cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics	NA|60aa|up_1|NZ_CP014123.1_4435919_4436099_+	NA	NA|407aa|up_0|NZ_CP014123.1_4436142_4437363_+	cd06818, PLPDE_III_cryptic_DSD, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase	NA|339aa|down_0|NZ_CP014123.1_4437570_4438587_-	COG2055, COG2055, Malate/L-lactate dehydrogenases [Energy production and conversion]	NA|83aa|down_1|NZ_CP014123.1_4438623_4438872_-	NA	NA|147aa|down_2|NZ_CP014123.1_4439152_4439593_-	TIGR02337, Homoprotocatechuate_degradative_operon_repressor	NA|211aa|down_3|NZ_CP014123.1_4439879_4440512_+	PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	NA|255aa|down_4|NZ_CP014123.1_4440508_4441273_+	PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	NA|489aa|down_5|NZ_CP014123.1_4441269_4442736_+	cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8 member A1-like	NA|286aa|down_6|NZ_CP014123.1_4442737_4443595_+	TIGR02298, putative_34-dihydroxyphenylacetate_23-dioxygenase, 3,4-dihydroxyphenylacetate 2,3-dioxygenase	NA|127aa|down_7|NZ_CP014123.1_4443604_4443985_+	PRK15031, PRK15031, 5-carboxymethyl-2-hydroxymuconate Delta-isomerase	NA|268aa|down_8|NZ_CP014123.1_4444093_4444897_+	TIGR02312, 2-keto-4-pentenoate_hydratase, 2-oxo-hepta-3-ene-1,7-dioic acid hydratase	NA|266aa|down_9|NZ_CP014123.1_4444907_4445705_+	TIGR02311, 24-dihydroxyhept-2-ene-17-dioic_acid_aldolase, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
