assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002952015.1_ASM295201v1	NZ_CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	1	99815-99897	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,csa3	Orphan	TGTTGGGGCCCATCCCCCAACTTGCA	26	1	17	99841-99871|99841-99871|99841-99871|99841-99871|99841-99871|99841-99871|99841-99871|99841-99871|99841-99871|99841-99871|99841-99871|99841-99871|99841-99871|99841-99871|99841-99871|99841-99871|99841-99871	NZ_CP020656.1_435204-435174|NZ_CP020656.1_523575-523605|NZ_CP020656.1_1012478-1012448|NZ_CP020656.1_1017912-1017882|NZ_CP020656.1_1299069-1299099|NZ_CP020656.1_1501992-1501962|NZ_CP020656.1_1968236-1968206|NZ_CP020656.1_1968294-1968264|NZ_CP020656.1_2333626-2333596|NZ_CP020656.1_3828-3858|NZ_CP020656.1_733399-733429|NZ_CP020656.1_733571-733601|NZ_CP020656.1_1502050-1502020|NZ_CP020656.1_1862334-1862364|NZ_CP020656.1_2205909-2205879|NZ_CP020656.1_200742-200712|NZ_CP020656.1_200852-200822	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA|42aa|up_1|NZ_CP020656.1_98839_98965_+,NA	NA|145aa|up_9|NZ_CP020656.1_90059_90494_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|157aa|up_8|NZ_CP020656.1_90648_91119_-	pfam10804, DUF2538, Protein of unknown function (DUF2538)	NA|406aa|up_7|NZ_CP020656.1_91166_92384_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|398aa|up_6|NZ_CP020656.1_92834_94028_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|93aa|up_5|NZ_CP020656.1_94564_94843_-	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]	NA|202aa|up_4|NZ_CP020656.1_94851_95457_-	TIGR02897, AA3-600_quinol_oxidase_subunit_III, cytochrome aa3 quinol oxidase, subunit III	NA|663aa|up_3|NZ_CP020656.1_95446_97435_-	TIGR02882, cytochrome_aa3_quinol_oxidase_subunit_I, cytochrome aa3 quinol oxidase, subunit I	NA|367aa|up_2|NZ_CP020656.1_97434_98535_-	TIGR01432, AA3-600_quinol_oxidase_subunit_II, cytochrome aa3 quinol oxidase, subunit II	NA|42aa|up_1|NZ_CP020656.1_98839_98965_+	NA	NA|106aa|up_0|NZ_CP020656.1_99105_99423_-	pfam16403, DUF5011, Domain of unknown function (DUF5011)	NA|287aa|down_0|NZ_CP020656.1_100345_101206_-	PRK14175, PRK14175, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|161aa|down_1|NZ_CP020656.1_101406_101889_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|375aa|down_2|NZ_CP020656.1_101875_103000_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|235aa|down_3|NZ_CP020656.1_103003_103708_+	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed	NA|88aa|down_4|NZ_CP020656.1_103707_103971_+	COG1828, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]	NA|224aa|down_5|NZ_CP020656.1_103972_104644_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|down_6|NZ_CP020656.1_104636_106826_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|down_7|NZ_CP020656.1_106804_108289_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|down_8|NZ_CP020656.1_108281_109310_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|down_9|NZ_CP020656.1_109312_109879_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
GCF_002952015.1_ASM295201v1	NZ_CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	2	700928-701012	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,csa3	Orphan	CTTTTCGTCAGCTTCTATGTTGGGGCCC	28	1	6	700956-700984|700956-700984|700956-700984|700956-700984|700956-700984|700956-700984	NZ_CP020656.1_284505-284477|NZ_CP020656.1_1005338-1005310|NZ_CP020656.1_1012547-1012519|NZ_CP020656.1_2324348-2324320|NZ_CP020656.1_2334982-2334954|NZ_CP020656.1_878795-878823	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA,NA	NA|228aa|up_9|NZ_CP020656.1_690109_690793_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP020656.1_691035_691212_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP020656.1_691504_692851_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP020656.1_692857_693610_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP020656.1_693611_694550_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP020656.1_694553_695693_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP020656.1_695828_697661_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP020656.1_697729_698356_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP020656.1_698387_699365_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP020656.1_699465_700590_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP020656.1_701151_702975_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP020656.1_703320_703572_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP020656.1_703616_704591_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NZ_CP020656.1_704647_706849_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP020656.1_706853_707315_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP020656.1_707406_708093_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP020656.1_708132_708849_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP020656.1_708851_709205_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP020656.1_709205_709790_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP020656.1_709779_710349_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_002952015.1_ASM295201v1	NZ_CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	3	821067-821153	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,csa3	Orphan	ATGCAAGTTGGGGTGGGACCCCAACATAGA	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA,NA|38aa|down_4|NZ_CP020656.1_825603_825717_-	NA|423aa|up_9|NZ_CP020656.1_803467_804736_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|NZ_CP020656.1_804784_805906_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|NZ_CP020656.1_806253_807615_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|NZ_CP020656.1_809939_811697_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|NZ_CP020656.1_811718_812687_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|NZ_CP020656.1_812955_813900_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|NZ_CP020656.1_813899_814757_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|NZ_CP020656.1_814951_816181_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|NZ_CP020656.1_816630_819828_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|NZ_CP020656.1_819848_820790_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|NZ_CP020656.1_821243_822542_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|NZ_CP020656.1_822746_823160_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|NZ_CP020656.1_823605_824295_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|NZ_CP020656.1_824469_825525_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|38aa|down_4|NZ_CP020656.1_825603_825717_-	NA	NA|373aa|down_5|NZ_CP020656.1_825840_826959_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_6|NZ_CP020656.1_827099_827600_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_7|NZ_CP020656.1_827845_829048_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_8|NZ_CP020656.1_829135_830083_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_9|NZ_CP020656.1_830205_830700_-	PRK00522, tpx, thiol peroxidase
GCF_002952015.1_ASM295201v1	NZ_CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	4	878811-878889	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,csa3	Orphan	TATTGTAAGCTGACTTTCCGCCA	23	1	1	878834-878866	NZ_CP020656.1_2324309-2324277	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA,NA	NA|301aa|up_9|NZ_CP020656.1_862634_863537_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP020656.1_863702_867356_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP020656.1_867356_870833_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP020656.1_870992_871568_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP020656.1_871583_872108_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP020656.1_872112_872688_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP020656.1_873012_874344_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP020656.1_874694_875900_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP020656.1_875889_877269_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP020656.1_877510_878440_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP020656.1_879030_880275_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP020656.1_880383_881574_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP020656.1_881882_883010_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP020656.1_883370_883748_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP020656.1_884162_884756_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP020656.1_884819_885203_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP020656.1_885333_887739_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP020656.1_887731_888160_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|114aa|down_8|NZ_CP020656.1_888159_888501_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP020656.1_888493_889990_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_002952015.1_ASM295201v1	NZ_CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	5	1174671-1174764	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,csa3	Orphan	GGCTTTTATGCAGTTGCTGCACAAACAA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA|239aa|up_5|NZ_CP020656.1_1169499_1170216_-,NA|169aa|up_4|NZ_CP020656.1_1170377_1170884_-,NA	NA|75aa|up_9|NZ_CP020656.1_1165622_1165847_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_CP020656.1_1166040_1166970_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_CP020656.1_1167917_1168292_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_CP020656.1_1168542_1169331_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_CP020656.1_1169499_1170216_-	NA	NA|169aa|up_4|NZ_CP020656.1_1170377_1170884_-	NA	NA|267aa|up_3|NZ_CP020656.1_1171019_1171820_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_CP020656.1_1171803_1172523_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_CP020656.1_1172577_1173528_-	pfam01032, FecCD, FecCD transport family	NA|296aa|up_0|NZ_CP020656.1_1173675_1174563_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_CP020656.1_1174879_1175515_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_CP020656.1_1175784_1177446_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|139aa|down_2|NZ_CP020656.1_1177442_1177859_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|NZ_CP020656.1_1178134_1179145_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_4|NZ_CP020656.1_1179643_1180165_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|NZ_CP020656.1_1180192_1181488_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|NZ_CP020656.1_1181527_1182004_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|NZ_CP020656.1_1182172_1182709_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|NZ_CP020656.1_1182919_1183858_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|209aa|down_9|NZ_CP020656.1_1184127_1184754_-	pfam04276, DUF443, Protein of unknown function (DUF443)
GCF_002952015.1_ASM295201v1	NZ_CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	6	2076786-2076876	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,csa3	Orphan	GGGCCCACACCCCAACTTGCATTGCCTGTAGAA	33	1	21	2076819-2076843|2076819-2076843|2076819-2076843|2076819-2076843|2076819-2076843|2076819-2076843|2076819-2076843|2076819-2076843|2076819-2076843|2076819-2076843|2076819-2076843|2076819-2076843|2076819-2076843|2076819-2076843|2076819-2076843|2076819-2076843|2076819-2076843|2076819-2076843|2076819-2076843|2076819-2076843|2076819-2076843	NZ_CP020656.1_435192-435168|NZ_CP020656.1_523587-523611|NZ_CP020656.1_1012466-1012442|NZ_CP020656.1_1017900-1017876|NZ_CP020656.1_1299081-1299105|NZ_CP020656.1_1501980-1501956|NZ_CP020656.1_1502038-1502014|NZ_CP020656.1_1862346-1862370|NZ_CP020656.1_1968224-1968200|NZ_CP020656.1_1968282-1968258|NZ_CP020656.1_2333614-2333590|NZ_CP020656.1_3840-3864|NZ_CP020656.1_200730-200706|NZ_CP020656.1_200840-200816|NZ_CP020656.1_439602-439626|NZ_CP020656.1_733411-733435|NZ_CP020656.1_733583-733607|NZ_CP020656.1_823386-823362|NZ_CP020656.1_2092062-2092038|NZ_CP020656.1_2205897-2205873|NZ_CP020656.1_2685996-2685972	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA|49aa|up_4|NZ_CP020656.1_2071055_2071202_+,NA	NA|312aa|up_9|NZ_CP020656.1_2064372_2065308_+	cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases	NA|156aa|up_8|NZ_CP020656.1_2067726_2068194_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|93aa|up_7|NZ_CP020656.1_2068216_2068495_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|420aa|up_6|NZ_CP020656.1_2068721_2069981_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|352aa|up_5|NZ_CP020656.1_2069998_2071054_+	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family	NA|49aa|up_4|NZ_CP020656.1_2071055_2071202_+	NA	NA|348aa|up_3|NZ_CP020656.1_2071225_2072269_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|239aa|up_2|NZ_CP020656.1_2072796_2073513_+	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|342aa|up_1|NZ_CP020656.1_2073505_2074531_+	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|565aa|up_0|NZ_CP020656.1_2074552_2076247_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|390aa|down_0|NZ_CP020656.1_2077297_2078467_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|239aa|down_1|NZ_CP020656.1_2078742_2079459_+	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|342aa|down_2|NZ_CP020656.1_2079451_2080477_+	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|563aa|down_3|NZ_CP020656.1_2080498_2082187_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|574aa|down_4|NZ_CP020656.1_2082219_2083941_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|down_5|NZ_CP020656.1_2084084_2084759_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|585aa|down_6|NZ_CP020656.1_2085003_2086758_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|down_7|NZ_CP020656.1_2086760_2087501_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|down_8|NZ_CP020656.1_2087613_2088057_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|down_9|NZ_CP020656.1_2088049_2088751_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional
GCF_002952015.1_ASM295201v1	NZ_CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	7	2238050-2238183	1	PILER-CR	no		cas3,DEDDh,DinG,WYL,csa3	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA|34aa|up_0|NZ_CP020656.1_2235466_2235568_+,NA	NA|204aa|up_9|NZ_CP020656.1_2223622_2224234_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_CP020656.1_2224780_2226058_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_CP020656.1_2226967_2228791_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_CP020656.1_2228929_2229346_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_CP020656.1_2229576_2230269_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_4|NZ_CP020656.1_2230433_2231198_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_3|NZ_CP020656.1_2231351_2232032_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_CP020656.1_2232055_2233609_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_CP020656.1_2233725_2235084_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|34aa|up_0|NZ_CP020656.1_2235466_2235568_+	NA	NA|643aa|down_0|NZ_CP020656.1_2238527_2240456_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|212aa|down_1|NZ_CP020656.1_2240708_2241344_+	COG2344, COG2344, AT-rich DNA-binding protein [General function prediction only]	NA|360aa|down_2|NZ_CP020656.1_2241647_2242727_+	pfam04143, Sulf_transp, Sulphur transport	NA|75aa|down_3|NZ_CP020656.1_2242786_2243011_+	COG0425, SirA, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_4|NZ_CP020656.1_2243218_2244469_+	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|317aa|down_5|NZ_CP020656.1_2244651_2245602_+	cd01542, PBP1_TreR-like, ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators	NA|495aa|down_6|NZ_CP020656.1_2245750_2247235_+	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]	NA|320aa|down_7|NZ_CP020656.1_2247231_2248191_+	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	NA|239aa|down_8|NZ_CP020656.1_2248567_2249284_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|428aa|down_9|NZ_CP020656.1_2249302_2250586_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
GCF_002952015.1_ASM295201v1	NZ_CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	8	2260355-2260444	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,csa3	Orphan	TGATTGAGAAGTCAGTCGAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA,NA|49aa|down_2|NZ_CP020656.1_2260997_2261144_+,NA|70aa|down_3|NZ_CP020656.1_2261136_2261346_+,NA|127aa|down_7|NZ_CP020656.1_2264648_2265029_+,NA|114aa|down_9|NZ_CP020656.1_2266183_2266525_+	NA|188aa|up_9|NZ_CP020656.1_2250761_2251325_-	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|45aa|up_8|NZ_CP020656.1_2251560_2251695_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_7|NZ_CP020656.1_2252291_2253077_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|199aa|up_6|NZ_CP020656.1_2253437_2254034_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|394aa|up_5|NZ_CP020656.1_2254259_2255441_+	pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP)	NA|248aa|up_4|NZ_CP020656.1_2255464_2256208_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_3|NZ_CP020656.1_2256382_2256667_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_2|NZ_CP020656.1_2256742_2258359_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|391aa|up_1|NZ_CP020656.1_2258427_2259600_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|225aa|up_0|NZ_CP020656.1_2259613_2260288_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|73aa|down_0|NZ_CP020656.1_2260460_2260679_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|106aa|down_1|NZ_CP020656.1_2260683_2261001_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|49aa|down_2|NZ_CP020656.1_2260997_2261144_+	NA	NA|70aa|down_3|NZ_CP020656.1_2261136_2261346_+	NA	NA|107aa|down_4|NZ_CP020656.1_2261348_2261669_+	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|290aa|down_5|NZ_CP020656.1_2261735_2262605_+	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|567aa|down_6|NZ_CP020656.1_2262618_2264319_+	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|127aa|down_7|NZ_CP020656.1_2264648_2265029_+	NA	NA|214aa|down_8|NZ_CP020656.1_2265025_2265667_+	pfam16560, SAPI, Putative mobile pathogenicity island	NA|114aa|down_9|NZ_CP020656.1_2266183_2266525_+	NA
GCF_002952015.1_ASM295201v1	NZ_CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	9	2335009-2335098	8	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,WYL,csa3	Unclear	AAAAGAAATTCTACAGGCAATGCAAGTTGGGG	32	1	2	2335041-2335066|2335041-2335066	NZ_CP020656.1_1968249-1968274|NZ_CP020656.1_1502005-1502030	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA|31aa|up_6|NZ_CP020656.1_2329694_2329787_+,NA|37aa|up_2|NZ_CP020656.1_2332792_2332903_+,NA|138aa|up_1|NZ_CP020656.1_2332931_2333345_+,NA|129aa|down_1|NZ_CP020656.1_2336206_2336593_+,NA|92aa|down_6|NZ_CP020656.1_2340574_2340850_-	NA|177aa|up_9|NZ_CP020656.1_2327009_2327540_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|up_8|NZ_CP020656.1_2327786_2328857_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_7|NZ_CP020656.1_2328924_2329479_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_6|NZ_CP020656.1_2329694_2329787_+	NA	NA|167aa|up_5|NZ_CP020656.1_2329868_2330369_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_4|NZ_CP020656.1_2330660_2331974_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_3|NZ_CP020656.1_2331975_2332707_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|up_2|NZ_CP020656.1_2332792_2332903_+	NA	NA|138aa|up_1|NZ_CP020656.1_2332931_2333345_+	NA	NA|329aa|up_0|NZ_CP020656.1_2333716_2334703_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|NZ_CP020656.1_2335231_2335990_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|NZ_CP020656.1_2336206_2336593_+	NA	NA|234aa|down_2|NZ_CP020656.1_2336607_2337309_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|NZ_CP020656.1_2337305_2338349_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|NZ_CP020656.1_2338338_2338968_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|NZ_CP020656.1_2339079_2340297_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|NZ_CP020656.1_2340574_2340850_-	NA	NA|155aa|down_7|NZ_CP020656.1_2340856_2341321_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|NZ_CP020656.1_2341467_2341668_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|NZ_CP020656.1_2341670_2342927_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCF_002952015.1_ASM295201v1	NZ_CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	10	2659024-2659113	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,WYL,csa3	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA|77aa|up_5|NZ_CP020656.1_2653895_2654126_-,NA|364aa|up_0|NZ_CP020656.1_2657915_2659007_+,NA|35aa|down_0|NZ_CP020656.1_2659448_2659553_-,NA|53aa|down_2|NZ_CP020656.1_2660232_2660391_+	NA|237aa|up_9|NZ_CP020656.1_2649506_2650217_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP020656.1_2650337_2650781_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP020656.1_2650980_2651394_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP020656.1_2651850_2653224_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP020656.1_2653895_2654126_-	NA	NA|313aa|up_4|NZ_CP020656.1_2654156_2655095_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP020656.1_2655530_2656196_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP020656.1_2656347_2656668_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP020656.1_2656669_2657650_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP020656.1_2657915_2659007_+	NA	NA|35aa|down_0|NZ_CP020656.1_2659448_2659553_-	NA	NA|57aa|down_1|NZ_CP020656.1_2660069_2660240_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|down_2|NZ_CP020656.1_2660232_2660391_+	NA	NA|286aa|down_3|NZ_CP020656.1_2661048_2661906_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP020656.1_2661973_2662756_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP020656.1_2662987_2664793_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP020656.1_2665473_2667012_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP020656.1_2667046_2669179_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP020656.1_2669190_2669625_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP020656.1_2669624_2670731_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_002952015.1_ASM295201v1	NZ_CP020656	Staphylococcus aureus strain K5 chromosome, complete genome	11	2671354-2671439	10	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,WYL,csa3	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3	NA|35aa|up_9|NZ_CP020656.1_2659448_2659553_-,NA|53aa|up_7|NZ_CP020656.1_2660232_2660391_+,NA|52aa|down_9|NZ_CP020656.1_2688768_2688924_+	NA|35aa|up_9|NZ_CP020656.1_2659448_2659553_-	NA	NA|57aa|up_8|NZ_CP020656.1_2660069_2660240_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|53aa|up_7|NZ_CP020656.1_2660232_2660391_+	NA	NA|286aa|up_6|NZ_CP020656.1_2661048_2661906_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP020656.1_2661973_2662756_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP020656.1_2662987_2664793_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP020656.1_2665473_2667012_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP020656.1_2667046_2669179_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP020656.1_2669190_2669625_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP020656.1_2669624_2670731_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP020656.1_2678822_2680178_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP020656.1_2680204_2681137_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP020656.1_2681138_2681948_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP020656.1_2682136_2683045_-	cd09989, Arginase, Arginase family	NA|537aa|down_4|NZ_CP020656.1_2684132_2685743_+	COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]	NA|342aa|down_5|NZ_CP020656.1_2686171_2687197_-	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|155aa|down_6|NZ_CP020656.1_2687189_2687654_-	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase	NA|221aa|down_7|NZ_CP020656.1_2687626_2688289_-	COG1214, COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|154aa|down_8|NZ_CP020656.1_2688269_2688731_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|52aa|down_9|NZ_CP020656.1_2688768_2688924_+	NA
