assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002953555.1_ASM295355v1	NZ_CP026515	Helicobacter pylori strain dRdM2addM2 chromosome, complete genome	1	350530-350656	1	CRISPRCasFinder	no	cas2	cas3,cas2,cas14j,DEDDh	Unclear	CTCTCTAGCGTTACTGAAGAGATTATTTCAAAAAAAC	37	0	0	NA	NA	NA	1	1	Unclear	cas3,cas2,cas14j,DEDDh	NA|102aa|up_0|NZ_CP026515.1_349838_350144_+,NA|89aa|down_1|NZ_CP026515.1_351089_351356_+,NA|32aa|down_2|NZ_CP026515.1_351367_351463_+,NA|261aa|down_5|NZ_CP026515.1_353278_354061_+	NA|298aa|up_9|NZ_CP026515.1_342282_343176_+	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|181aa|up_8|NZ_CP026515.1_343172_343715_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|313aa|up_7|NZ_CP026515.1_343647_344586_-	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|261aa|up_6|NZ_CP026515.1_344582_345365_-	PRK13980, PRK13980, NAD synthetase; Provisional	NA|331aa|up_5|NZ_CP026515.1_345613_346606_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|up_4|NZ_CP026515.1_346630_347437_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|78aa|up_3|NZ_CP026515.1_347433_347667_+	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|271aa|up_2|NZ_CP026515.1_347666_348479_+	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|135aa|up_1|NZ_CP026515.1_348475_348880_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|102aa|up_0|NZ_CP026515.1_349838_350144_+	NA	NA|117aa|down_0|NZ_CP026515.1_350751_351102_+	cd00735, T4-like_lys, bacteriophage T4-like lysozymes	NA|89aa|down_1|NZ_CP026515.1_351089_351356_+	NA	NA|32aa|down_2|NZ_CP026515.1_351367_351463_+	NA	NA|131aa|down_3|NZ_CP026515.1_351655_352048_+	COG3326, COG3326, Predicted membrane protein [Function unknown]	NA|112aa|down_4|NZ_CP026515.1_352823_353159_+	COG4499, COG4499, Predicted membrane protein [Function unknown]	NA|261aa|down_5|NZ_CP026515.1_353278_354061_+	NA	NA|299aa|down_6|NZ_CP026515.1_354054_354951_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|517aa|down_7|NZ_CP026515.1_354950_356501_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|539aa|down_8|NZ_CP026515.1_356509_358126_-	PRK05380, pyrG, CTP synthetase; Validated	NA|223aa|down_9|NZ_CP026515.1_358386_359055_+	cd03392, PAP2_like_2, PAP2_like_2 proteins
GCF_002953555.1_ASM295355v1	NZ_CP026515	Helicobacter pylori strain dRdM2addM2 chromosome, complete genome	2	556231-556518	1	PILER-CR	no		cas3,cas2,cas14j,DEDDh	Orphan	CTTCCTCTAAAAGTTTTCTCGCTTCAGGCGTGAGTAATTTCTCGCATTCTTTTTTCTCTTTTT	63	1	1	556294-556347	NZ_CP026515.1_555964-556017	NA	2	2	Orphan	cas3,cas2,cas14j,DEDDh	NA|116aa|up_5|NZ_CP026515.1_547385_547733_+,NA|482aa|up_4|NZ_CP026515.1_548191_549637_+,NA|536aa|down_1|NZ_CP026515.1_561681_563289_-,NA|219aa|down_3|NZ_CP026515.1_564437_565094_+,NA|127aa|down_6|NZ_CP026515.1_567198_567579_-,NA|115aa|down_7|NZ_CP026515.1_568011_568356_-,NA|377aa|down_8|NZ_CP026515.1_568779_569910_+,NA|307aa|down_9|NZ_CP026515.1_569924_570845_+	NA|444aa|up_9|NZ_CP026515.1_543065_544397_+	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|303aa|up_8|NZ_CP026515.1_544393_545302_+	COG1159, Era, GTPase [General function prediction only]	NA|331aa|up_7|NZ_CP026515.1_545298_546291_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|277aa|up_6|NZ_CP026515.1_546379_547210_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|116aa|up_5|NZ_CP026515.1_547385_547733_+	NA	NA|482aa|up_4|NZ_CP026515.1_548191_549637_+	NA	NA|170aa|up_3|NZ_CP026515.1_549646_550156_+	pfam16494, Na_Ca_ex_C, C-terminal extension of sodium/calcium exchanger domain	NA|749aa|up_2|NZ_CP026515.1_550274_552521_-	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]	NA|331aa|up_1|NZ_CP026515.1_552529_553522_-	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11	NA|200aa|up_0|NZ_CP026515.1_553526_554126_-	pfam09053, CagZ, CagZ	NA|523aa|down_0|NZ_CP026515.1_560060_561629_-	COG3504, VirB9, Type IV secretory pathway, VirB9 components [Intracellular trafficking and secretion]	NA|536aa|down_1|NZ_CP026515.1_561681_563289_-	NA	NA|253aa|down_2|NZ_CP026515.1_563293_564052_-	COG3736, VirB8, Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]	NA|219aa|down_3|NZ_CP026515.1_564437_565094_+	NA	NA|281aa|down_4|NZ_CP026515.1_565129_565972_+	pfam13117, Cag12, Cag pathogenicity island protein Cag12	NA|197aa|down_5|NZ_CP026515.1_566182_566773_-	pfam16707, CagS, Cag pathogenicity island protein S of Helicobacter pylori	NA|127aa|down_6|NZ_CP026515.1_567198_567579_-	NA	NA|115aa|down_7|NZ_CP026515.1_568011_568356_-	NA	NA|377aa|down_8|NZ_CP026515.1_568779_569910_+	NA	NA|307aa|down_9|NZ_CP026515.1_569924_570845_+	NA
GCF_002953555.1_ASM295355v1	NZ_CP026515	Helicobacter pylori strain dRdM2addM2 chromosome, complete genome	3	980285-980480	2	PILER-CR	no		cas3,cas2,cas14j,DEDDh	Orphan	TTCAATCAAGGGACTTATAACTTTA	25	0	0	NA	NA	I-B	3	3	Orphan	cas3,cas2,cas14j,DEDDh	NA,NA|220aa|down_8|NZ_CP026515.1_993582_994242_+	NA|676aa|up_9|NZ_CP026515.1_962700_964728_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|516aa|up_8|NZ_CP026515.1_965246_966794_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|530aa|up_7|NZ_CP026515.1_966815_968405_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|up_6|NZ_CP026515.1_969307_970852_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|563aa|up_5|NZ_CP026515.1_971097_972786_-	pfam00593, TonB_dep_Rec, TonB dependent receptor	NA|250aa|up_4|NZ_CP026515.1_972785_973535_-	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|144aa|up_3|NZ_CP026515.1_973794_974226_-	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|1086aa|up_2|NZ_CP026515.1_974230_977488_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|231aa|up_1|NZ_CP026515.1_977586_978279_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|333aa|up_0|NZ_CP026515.1_978422_979421_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|370aa|down_0|NZ_CP026515.1_987142_988252_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|69aa|down_1|NZ_CP026515.1_988311_988518_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_2|NZ_CP026515.1_988673_989255_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|382aa|down_3|NZ_CP026515.1_989251_990397_+	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|327aa|down_4|NZ_CP026515.1_990335_991316_+	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|181aa|down_5|NZ_CP026515.1_991316_991859_+	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|304aa|down_6|NZ_CP026515.1_991874_992786_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|268aa|down_7|NZ_CP026515.1_992782_993586_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|220aa|down_8|NZ_CP026515.1_993582_994242_+	NA	NA|201aa|down_9|NZ_CP026515.1_994243_994846_+	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
GCF_002953555.1_ASM295355v1	NZ_CP026515	Helicobacter pylori strain dRdM2addM2 chromosome, complete genome	4	1168598-1168686	2	CRISPRCasFinder	no	cas14j	cas3,cas2,cas14j,DEDDh	Unclear	CATGCGAGAAGTAGTGGTTCAAGAACATT	29	0	0	NA	NA	NA	1	1	TypeV	cas3,cas2,cas14j,DEDDh	NA|32aa|up_7|NZ_CP026515.1_1160647_1160743_-,NA|436aa|down_0|NZ_CP026515.1_1169916_1171224_+	cas14j|428aa|up_9|NZ_CP026515.1_1158768_1160052_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|143aa|up_8|NZ_CP026515.1_1160121_1160550_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|32aa|up_7|NZ_CP026515.1_1160647_1160743_-	NA	NA|291aa|up_6|NZ_CP026515.1_1160763_1161636_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|209aa|up_5|NZ_CP026515.1_1161705_1162332_-	TIGR01182, KHG/KDPG_aldolase_	NA|609aa|up_4|NZ_CP026515.1_1162350_1164177_-	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase	NA|426aa|up_3|NZ_CP026515.1_1164242_1165520_+	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]	NA|228aa|up_2|NZ_CP026515.1_1165530_1166214_+	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|337aa|up_1|NZ_CP026515.1_1166200_1167211_+	TIGR00749, Glucokinase_Glucose_kinase	NA|349aa|up_0|NZ_CP026515.1_1167372_1168419_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|436aa|down_0|NZ_CP026515.1_1169916_1171224_+	NA	NA|221aa|down_1|NZ_CP026515.1_1171230_1171893_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|187aa|down_2|NZ_CP026515.1_1172182_1172743_+	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated	NA|131aa|down_3|NZ_CP026515.1_1172758_1173151_+	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	NA|408aa|down_4|NZ_CP026515.1_1173160_1174384_+	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha	NA|315aa|down_5|NZ_CP026515.1_1174396_1175341_+	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|441aa|down_6|NZ_CP026515.1_1175450_1176773_+	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|278aa|down_7|NZ_CP026515.1_1176838_1177672_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|659aa|down_8|NZ_CP026515.1_1177682_1179659_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|229aa|down_9|NZ_CP026515.1_1179728_1180415_-	PRK13460, PRK13460, F0F1 ATP synthase subunit B; Provisional
