assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002975475.1_ASM297547v1	NZ_CP027035	Mycobacterium tuberculosis variant bovis strain 2002/0476 chromosome, complete genome	1	632053-632190	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	632071-632088|632071-632088|632155-632172	NZ_CP027035.1_22128-22145|NZ_CP027035.1_1410188-1410205|NZ_CP027035.1_973506-973523	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP027035.1_622797_622959_-,NA|478aa|up_0|NZ_CP027035.1_629068_630502_-,NA|450aa|down_2|NZ_CP027035.1_633825_635175_-,NA|93aa|down_5|NZ_CP027035.1_636705_636984_-	NA|325aa|up_9|NZ_CP027035.1_620567_621542_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP027035.1_621583_622801_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP027035.1_622797_622959_-	NA	NA|106aa|up_6|NZ_CP027035.1_623005_623323_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|582aa|up_5|NZ_CP027035.1_623469_625215_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP027035.1_625243_626251_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP027035.1_626332_627211_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP027035.1_627227_628022_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP027035.1_628018_629059_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP027035.1_629068_630502_-	NA	NA|219aa|down_0|NZ_CP027035.1_632489_633146_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP027035.1_633142_633805_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP027035.1_633825_635175_-	NA	NA|381aa|down_3|NZ_CP027035.1_635186_636329_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP027035.1_636343_636646_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP027035.1_636705_636984_-	NA	NA|418aa|down_6|NZ_CP027035.1_636980_638234_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP027035.1_638353_638740_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP027035.1_638802_639687_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP027035.1_639782_640685_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_002975475.1_ASM297547v1	NZ_CP027035	Mycobacterium tuberculosis variant bovis strain 2002/0476 chromosome, complete genome	2	692797-692873	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NZ_CP027035.1_678690_679098_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NZ_CP027035.1_679157_679844_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NZ_CP027035.1_679997_682631_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NZ_CP027035.1_682653_685041_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NZ_CP027035.1_685178_685901_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NZ_CP027035.1_685897_686695_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NZ_CP027035.1_686696_687584_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NZ_CP027035.1_687589_688804_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|344aa|up_1|NZ_CP027035.1_688800_689832_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|up_0|NZ_CP027035.1_689828_691274_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP027035.1_694008_695559_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP027035.1_695610_696003_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP027035.1_695999_696257_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP027035.1_696439_697675_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP027035.1_697925_698339_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP027035.1_698335_698572_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP027035.1_698675_699182_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP027035.1_699295_699766_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP027035.1_699809_700571_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP027035.1_700627_700939_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002975475.1_ASM297547v1	NZ_CP027035	Mycobacterium tuberculosis variant bovis strain 2002/0476 chromosome, complete genome	3	840288-841168	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGGGCCGGCGGGGCCGGCGG	24	2	2	840312-840332|840405-840425	NZ_CP027035.1_925963-925983|NZ_CP027035.1_333656-333636	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|71aa|up_8|NZ_CP027035.1_831050_831263_+,NA|176aa|up_5|NZ_CP027035.1_833127_833655_+,NA|186aa|up_3|NZ_CP027035.1_835237_835795_-,NA|82aa|down_2|NZ_CP027035.1_843749_843995_+,NA|242aa|down_8|NZ_CP027035.1_852457_853183_-	NA|166aa|up_9|NZ_CP027035.1_830556_831054_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|71aa|up_8|NZ_CP027035.1_831050_831263_+	NA	NA|183aa|up_7|NZ_CP027035.1_831411_831960_+	TIGR03086, TIGR03086, TIGR03086 family protein	NA|283aa|up_6|NZ_CP027035.1_832164_833013_+	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|176aa|up_5|NZ_CP027035.1_833127_833655_+	NA	NA|176aa|up_4|NZ_CP027035.1_834332_834860_+	pfam00934, PE, PE family	NA|186aa|up_3|NZ_CP027035.1_835237_835795_-	NA	NA|169aa|up_2|NZ_CP027035.1_835791_836298_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|49aa|up_1|NZ_CP027035.1_836410_836557_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|798aa|up_0|NZ_CP027035.1_837052_839446_+	pfam00934, PE, PE family	NA|86aa|down_0|NZ_CP027035.1_842663_842921_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|143aa|down_1|NZ_CP027035.1_842944_843373_+	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|82aa|down_2|NZ_CP027035.1_843749_843995_+	NA	NA|295aa|down_3|NZ_CP027035.1_844063_844948_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|391aa|down_4|NZ_CP027035.1_844958_846131_-	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|511aa|down_5|NZ_CP027035.1_846137_847670_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|585aa|down_6|NZ_CP027035.1_847875_849630_+	pfam00934, PE, PE family	NA|646aa|down_7|NZ_CP027035.1_849819_851757_-	pfam00823, PPE, PPE family	NA|242aa|down_8|NZ_CP027035.1_852457_853183_-	NA	NA|248aa|down_9|NZ_CP027035.1_853324_854068_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_002975475.1_ASM297547v1	NZ_CP027035	Mycobacterium tuberculosis variant bovis strain 2002/0476 chromosome, complete genome	4	926977-927888	3	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGGGCCGGCGG	21	1	22	927844-927870|927844-927870|927844-927870|927844-927870|927844-927870|927844-927870|927844-927870|927844-927870|927844-927870|927844-927870|927844-927870|927844-927870|927844-927870|927844-927870|927844-927870|927844-927870|927844-927870|927844-927870|927844-927870|927844-927870|927844-927870|927844-927870	NZ_CP027035.1_834856-834882|NZ_CP027035.1_331598-331572|NZ_CP027035.1_334612-334586|NZ_CP027035.1_337393-337367|NZ_CP027035.1_842432-842458|NZ_CP027035.1_926710-926736|NZ_CP027035.1_2413851-2413825|NZ_CP027035.1_332834-332808|NZ_CP027035.1_335398-335372|NZ_CP027035.1_335737-335711|NZ_CP027035.1_338512-338486|NZ_CP027035.1_675897-675871|NZ_CP027035.1_838228-838254|NZ_CP027035.1_839326-839352|NZ_CP027035.1_926611-926637|NZ_CP027035.1_1215022-1215048|NZ_CP027035.1_1660897-1660871|NZ_CP027035.1_1858706-1858680|NZ_CP027035.1_2061567-2061541|NZ_CP027035.1_3766466-3766492|NZ_CP027035.1_3895803-3895829|NZ_CP027035.1_3895959-3895985	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_1|NZ_CP027035.1_932006_932558_-	NA|685aa|up_9|NZ_CP027035.1_914613_916668_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP027035.1_916833_918003_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP027035.1_918090_919107_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP027035.1_919268_919910_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP027035.1_919990_921046_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP027035.1_921097_921490_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP027035.1_921547_921970_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|302aa|up_2|NZ_CP027035.1_922326_923232_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_1|NZ_CP027035.1_923250_924066_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|138aa|up_0|NZ_CP027035.1_925307_925721_+	pfam00934, PE, PE family	NA|215aa|down_0|NZ_CP027035.1_931381_932026_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_1|NZ_CP027035.1_932006_932558_-	NA	NA|241aa|down_2|NZ_CP027035.1_932638_933361_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_3|NZ_CP027035.1_933431_934460_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|259aa|down_4|NZ_CP027035.1_935148_935925_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_5|NZ_CP027035.1_936011_936824_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_6|NZ_CP027035.1_936891_937752_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|431aa|down_7|NZ_CP027035.1_938546_939839_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|335aa|down_8|NZ_CP027035.1_939822_940827_+	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]	NA|217aa|down_9|NZ_CP027035.1_940890_941541_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_002975475.1_ASM297547v1	NZ_CP027035	Mycobacterium tuberculosis variant bovis strain 2002/0476 chromosome, complete genome	5	928825-928954	1	PILER-CR	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CCGCCGGCTCCGCCGGTGGCGCCGC	25	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_1|NZ_CP027035.1_932006_932558_-	NA|390aa|up_9|NZ_CP027035.1_916833_918003_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_8|NZ_CP027035.1_918090_919107_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_7|NZ_CP027035.1_919268_919910_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_6|NZ_CP027035.1_919990_921046_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_5|NZ_CP027035.1_921097_921490_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_4|NZ_CP027035.1_921547_921970_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|302aa|up_3|NZ_CP027035.1_922326_923232_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_2|NZ_CP027035.1_923250_924066_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|138aa|up_1|NZ_CP027035.1_925307_925721_+	pfam00934, PE, PE family	NA|774aa|up_0|NZ_CP027035.1_925717_928039_+	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|215aa|down_0|NZ_CP027035.1_931381_932026_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_1|NZ_CP027035.1_932006_932558_-	NA	NA|241aa|down_2|NZ_CP027035.1_932638_933361_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_3|NZ_CP027035.1_933431_934460_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|259aa|down_4|NZ_CP027035.1_935148_935925_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_5|NZ_CP027035.1_936011_936824_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_6|NZ_CP027035.1_936891_937752_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|431aa|down_7|NZ_CP027035.1_938546_939839_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|335aa|down_8|NZ_CP027035.1_939822_940827_+	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]	NA|217aa|down_9|NZ_CP027035.1_940890_941541_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_002975475.1_ASM297547v1	NZ_CP027035	Mycobacterium tuberculosis variant bovis strain 2002/0476 chromosome, complete genome	6	1213133-1214004	2	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	5	85	1213441-1213462|1213486-1213501|1213624-1213645|1213624-1213645|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213741-1213759|1213915-1213936|1213915-1213936|1213915-1213936|1213915-1213936	NZ_CP027035.1_2937543-2937522|NZ_CP027035.1_2088745-2088730|NZ_CP027035.1_838690-838711|NZ_CP027035.1_1218917-1218938|NZ_CP027035.1_334999-334981|NZ_CP027035.1_675561-675543|NZ_CP027035.1_1214701-1214719|NZ_CP027035.1_1218890-1218908|NZ_CP027035.1_1218962-1218980|NZ_CP027035.1_1635670-1635652|NZ_CP027035.1_1638496-1638478|NZ_CP027035.1_1641159-1641141|NZ_CP027035.1_1641870-1641852|NZ_CP027035.1_1991392-1991374|NZ_CP027035.1_2061741-2061723|NZ_CP027035.1_2062287-2062269|NZ_CP027035.1_2778440-2778422|NZ_CP027035.1_2781960-2781942|NZ_CP027035.1_149851-149869|NZ_CP027035.1_331763-331745|NZ_CP027035.1_332990-332972|NZ_CP027035.1_335941-335923|NZ_CP027035.1_336394-336376|NZ_CP027035.1_336445-336427|NZ_CP027035.1_336454-336436|NZ_CP027035.1_338725-338707|NZ_CP027035.1_338854-338836|NZ_CP027035.1_339121-339103|NZ_CP027035.1_339150-339168|NZ_CP027035.1_339244-339226|NZ_CP027035.1_363823-363805|NZ_CP027035.1_444165-444147|NZ_CP027035.1_547508-547490|NZ_CP027035.1_624753-624771|NZ_CP027035.1_624975-624993|NZ_CP027035.1_674727-674709|NZ_CP027035.1_841934-841952|NZ_CP027035.1_1091252-1091270|NZ_CP027035.1_1091900-1091918|NZ_CP027035.1_1095970-1095952|NZ_CP027035.1_1214113-1214131|NZ_CP027035.1_1214620-1214638|NZ_CP027035.1_1214911-1214929|NZ_CP027035.1_1214929-1214947|NZ_CP027035.1_1495894-1495876|NZ_CP027035.1_1623637-1623619|NZ_CP027035.1_1624090-1624072|NZ_CP027035.1_1641024-1641006|NZ_CP027035.1_1641033-1641015|NZ_CP027035.1_1641246-1641228|NZ_CP027035.1_1858283-1858265|NZ_CP027035.1_1858811-1858793|NZ_CP027035.1_1990666-1990648|NZ_CP027035.1_2001629-2001647|NZ_CP027035.1_2088943-2088925|NZ_CP027035.1_2297055-2297037|NZ_CP027035.1_2348455-2348437|NZ_CP027035.1_2409781-2409799|NZ_CP027035.1_2413764-2413746|NZ_CP027035.1_2556274-2556256|NZ_CP027035.1_2671110-2671128|NZ_CP027035.1_2771765-2771747|NZ_CP027035.1_2772347-2772329|NZ_CP027035.1_3020697-3020715|NZ_CP027035.1_3020796-3020814|NZ_CP027035.1_3670614-3670632|NZ_CP027035.1_3701764-3701746|NZ_CP027035.1_3702388-3702370|NZ_CP027035.1_3702631-3702613|NZ_CP027035.1_3702763-3702745|NZ_CP027035.1_3704668-3704650|NZ_CP027035.1_3765047-3765065|NZ_CP027035.1_3765230-3765248|NZ_CP027035.1_3886247-3886265|NZ_CP027035.1_3887986-3888004|NZ_CP027035.1_3888640-3888658|NZ_CP027035.1_3896181-3896199|NZ_CP027035.1_3980322-3980304|NZ_CP027035.1_4036870-4036888|NZ_CP027035.1_4036960-4036978|NZ_CP027035.1_4037068-4037086|NZ_CP027035.1_624645-624666|NZ_CP027035.1_36708-36687|NZ_CP027035.1_131790-131811|NZ_CP027035.1_2899280-2899301	NA	17	17	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP027035.1_1208565_1208832_+,NA|61aa|down_2|NZ_CP027035.1_1216497_1216680_+	NA|465aa|up_9|NZ_CP027035.1_1202899_1204294_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP027035.1_1204495_1205218_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP027035.1_1205249_1206416_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP027035.1_1206486_1206981_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP027035.1_1207166_1207601_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP027035.1_1207702_1208569_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP027035.1_1208565_1208832_+	NA	NA|674aa|up_2|NZ_CP027035.1_1208818_1210840_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP027035.1_1210938_1211667_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP027035.1_1211777_1212566_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP027035.1_1215312_1215633_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|55aa|down_1|NZ_CP027035.1_1216321_1216486_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_2|NZ_CP027035.1_1216497_1216680_+	NA	NA|152aa|down_3|NZ_CP027035.1_1216871_1217327_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|826aa|down_4|NZ_CP027035.1_1217741_1220219_+	pfam00934, PE, PE family	NA|313aa|down_5|NZ_CP027035.1_1220436_1221375_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_6|NZ_CP027035.1_1221762_1223043_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_7|NZ_CP027035.1_1223147_1223975_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|434aa|down_8|NZ_CP027035.1_1224185_1225487_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]	NA|292aa|down_9|NZ_CP027035.1_1225573_1226449_+	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins
GCF_002975475.1_ASM297547v1	NZ_CP027035	Mycobacterium tuberculosis variant bovis strain 2002/0476 chromosome, complete genome	7	2088415-2088669	4	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088496-2088513|2088496-2088513|2088586-2088603	NZ_CP027035.1_401832-401815|NZ_CP027035.1_608116-608099|NZ_CP027035.1_3417389-3417372	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP027035.1_2087774_2088038_-,NA	NA|165aa|up_9|NZ_CP027035.1_2074136_2074631_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|211aa|up_8|NZ_CP027035.1_2075011_2075644_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP027035.1_2076002_2078828_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP027035.1_2079054_2079915_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP027035.1_2079955_2080822_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP027035.1_2080826_2082713_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP027035.1_2082728_2084762_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP027035.1_2084881_2087107_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP027035.1_2087382_2087778_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP027035.1_2087774_2088038_-	NA	NA|350aa|down_0|NZ_CP027035.1_2089806_2090856_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP027035.1_2090855_2092223_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|480aa|down_2|NZ_CP027035.1_2092396_2093836_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|317aa|down_3|NZ_CP027035.1_2095348_2096299_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_4|NZ_CP027035.1_2096313_2096730_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_5|NZ_CP027035.1_2097007_2097430_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|101aa|down_6|NZ_CP027035.1_2097478_2097781_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_7|NZ_CP027035.1_2097777_2098092_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_8|NZ_CP027035.1_2098091_2099825_+	PRK13206, ureC, urease subunit alpha; Reviewed	NA|212aa|down_9|NZ_CP027035.1_2099824_2100460_+	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]
GCF_002975475.1_ASM297547v1	NZ_CP027035	Mycobacterium tuberculosis variant bovis strain 2002/0476 chromosome, complete genome	8	2170078-2170203	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	48	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP027035.1_2160122_2160530_-,NA|127aa|down_5|NZ_CP027035.1_2177812_2178193_-	NA|155aa|up_9|NZ_CP027035.1_2153436_2153901_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP027035.1_2154090_2156313_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP027035.1_2156350_2156794_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP027035.1_2156907_2157501_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP027035.1_2157583_2158189_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP027035.1_2158288_2159293_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP027035.1_2159392_2160145_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP027035.1_2160122_2160530_-	NA	NA|767aa|up_1|NZ_CP027035.1_2160664_2162965_+	PLN02892, PLN02892, isocitrate lyase	NA|1813aa|up_0|NZ_CP027035.1_2163134_2168573_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP027035.1_2172323_2172788_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP027035.1_2172885_2173749_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP027035.1_2173786_2175058_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP027035.1_2175329_2176445_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP027035.1_2176435_2177776_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP027035.1_2177812_2178193_-	NA	NA|621aa|down_6|NZ_CP027035.1_2178349_2180212_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP027035.1_2180219_2180699_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP027035.1_2180935_2181709_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP027035.1_2181712_2182480_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002975475.1_ASM297547v1	NZ_CP027035	Mycobacterium tuberculosis variant bovis strain 2002/0476 chromosome, complete genome	9	3085226-3086511	2,4,5	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-C,Type III-B,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	1	1	3086003-3086037	NZ_CP027035.1_3086512-3086546	II-B,III-A:II-B,III-A:II-B,III-A	16,17,17	17	TypeIII-A,TypeIII-C,TypeIII-B,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_7|NZ_CP027035.1_3078505_3078760_-,NA|135aa|up_6|NZ_CP027035.1_3078907_3079312_+,NA|64aa|up_5|NZ_CP027035.1_3079308_3079500_+,NA|86aa|up_4|NZ_CP027035.1_3081086_3081344_+,NA|104aa|up_3|NZ_CP027035.1_3081448_3081760_+,NA|203aa|up_2|NZ_CP027035.1_3082179_3082788_+,NA	NA|348aa|up_9|NZ_CP027035.1_3076820_3077864_-	COG5586, COG5586, Uncharacterized conserved protein [Function unknown]	NA|92aa|up_8|NZ_CP027035.1_3078054_3078330_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_7|NZ_CP027035.1_3078505_3078760_-	NA	NA|135aa|up_6|NZ_CP027035.1_3078907_3079312_+	NA	NA|64aa|up_5|NZ_CP027035.1_3079308_3079500_+	NA	NA|86aa|up_4|NZ_CP027035.1_3081086_3081344_+	NA	NA|104aa|up_3|NZ_CP027035.1_3081448_3081760_+	NA	NA|203aa|up_2|NZ_CP027035.1_3082179_3082788_+	NA	NA|470aa|up_1|NZ_CP027035.1_3082858_3084268_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP027035.1_3084264_3085077_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP027035.1_3086608_3087870_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP027035.1_3089830_3090172_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP027035.1_3090172_3091189_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm4gr5|303aa|down_3|NZ_CP027035.1_3093565_3094474_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_4|NZ_CP027035.1_3094454_3095165_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_5|NZ_CP027035.1_3095174_3095549_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_6|NZ_CP027035.1_3095545_3097984_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|263aa|down_7|NZ_CP027035.1_3097980_3098769_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_8|NZ_CP027035.1_3099102_3099648_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_9|NZ_CP027035.1_3099919_3100804_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]
GCF_002975475.1_ASM297547v1	NZ_CP027035	Mycobacterium tuberculosis variant bovis strain 2002/0476 chromosome, complete genome	10	3087905-3089782	5,6,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-C,Type III-B,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	25,25,24	25	TypeIII-A,TypeIII-C,TypeIII-B,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP027035.1_3078505_3078760_-,NA|135aa|up_7|NZ_CP027035.1_3078907_3079312_+,NA|64aa|up_6|NZ_CP027035.1_3079308_3079500_+,NA|86aa|up_5|NZ_CP027035.1_3081086_3081344_+,NA|104aa|up_4|NZ_CP027035.1_3081448_3081760_+,NA|203aa|up_3|NZ_CP027035.1_3082179_3082788_+,NA	NA|92aa|up_9|NZ_CP027035.1_3078054_3078330_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP027035.1_3078505_3078760_-	NA	NA|135aa|up_7|NZ_CP027035.1_3078907_3079312_+	NA	NA|64aa|up_6|NZ_CP027035.1_3079308_3079500_+	NA	NA|86aa|up_5|NZ_CP027035.1_3081086_3081344_+	NA	NA|104aa|up_4|NZ_CP027035.1_3081448_3081760_+	NA	NA|203aa|up_3|NZ_CP027035.1_3082179_3082788_+	NA	NA|470aa|up_2|NZ_CP027035.1_3082858_3084268_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP027035.1_3084264_3085077_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP027035.1_3086608_3087870_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP027035.1_3089830_3090172_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP027035.1_3090172_3091189_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm4gr5|303aa|down_2|NZ_CP027035.1_3093565_3094474_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_3|NZ_CP027035.1_3094454_3095165_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_4|NZ_CP027035.1_3095174_3095549_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_5|NZ_CP027035.1_3095545_3097984_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|263aa|down_6|NZ_CP027035.1_3097980_3098769_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_7|NZ_CP027035.1_3099102_3099648_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|295aa|down_8|NZ_CP027035.1_3099919_3100804_-	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]	NA|296aa|down_9|NZ_CP027035.1_3100806_3101694_-	pfam09407, AbiEi_1, AbiEi antitoxin C-terminal domain
GCF_002975475.1_ASM297547v1	NZ_CP027035	Mycobacterium tuberculosis variant bovis strain 2002/0476 chromosome, complete genome	11	3726536-3726662	4	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTTGCCGATGCCGGTGTTGAAA	22	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|96aa|up_1|NZ_CP027035.1_3719381_3719669_-,NA	NA|450aa|up_9|NZ_CP027035.1_3693954_3695304_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_8|NZ_CP027035.1_3695315_3696455_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_7|NZ_CP027035.1_3696451_3697183_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|1339aa|up_6|NZ_CP027035.1_3697191_3701208_-	pfam00823, PPE, PPE family	NA|339aa|up_5|NZ_CP027035.1_3701256_3702273_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|86aa|up_4|NZ_CP027035.1_3707258_3707516_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|149aa|up_3|NZ_CP027035.1_3717868_3718315_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|up_2|NZ_CP027035.1_3718351_3719092_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|up_1|NZ_CP027035.1_3719381_3719669_-	NA	NA|1445aa|up_0|NZ_CP027035.1_3720005_3724340_-	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|435aa|down_0|NZ_CP027035.1_3729850_3731155_-	pfam00823, PPE, PPE family	NA|130aa|down_1|NZ_CP027035.1_3733163_3733553_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_2|NZ_CP027035.1_3733566_3733860_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_3|NZ_CP027035.1_3733856_3734702_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_4|NZ_CP027035.1_3734825_3735101_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_5|NZ_CP027035.1_3735097_3735355_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|397aa|down_6|NZ_CP027035.1_3735396_3736587_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|123aa|down_7|NZ_CP027035.1_3736703_3737072_+	pfam00498, FHA, FHA domain	NA|184aa|down_8|NZ_CP027035.1_3737068_3737620_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|194aa|down_9|NZ_CP027035.1_3737626_3738208_-	COG2229, COG2229, Predicted GTPase [General function prediction only]
GCF_002975475.1_ASM297547v1	NZ_CP027035	Mycobacterium tuberculosis variant bovis strain 2002/0476 chromosome, complete genome	12	4053397-4053485	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NZ_CP027035.1_4043983_4044754_-,NA|233aa|up_0|NZ_CP027035.1_4052501_4053200_-,NA|126aa|down_6|NZ_CP027035.1_4058720_4059098_+	NA|388aa|up_9|NZ_CP027035.1_4039654_4040818_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NZ_CP027035.1_4040814_4041867_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NZ_CP027035.1_4042365_4043229_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NZ_CP027035.1_4043983_4044754_-	NA	NA|549aa|up_5|NZ_CP027035.1_4044750_4046397_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NZ_CP027035.1_4046393_4047257_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NZ_CP027035.1_4047249_4048176_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NZ_CP027035.1_4048177_4049803_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NZ_CP027035.1_4050510_4052466_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP027035.1_4052501_4053200_-	NA	NA|173aa|down_0|NZ_CP027035.1_4053545_4054064_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP027035.1_4054064_4055048_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP027035.1_4055040_4056234_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP027035.1_4056239_4057061_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|216aa|down_4|NZ_CP027035.1_4057192_4057840_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP027035.1_4057875_4058613_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP027035.1_4058720_4059098_+	NA	NA|225aa|down_7|NZ_CP027035.1_4059196_4059871_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP027035.1_4059976_4060771_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP027035.1_4060777_4061233_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
