assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002982115.1_ASM298211v1	NZ_CP019980	Lysinibacillus sphaericus strain DSM 28 chromosome, complete genome	1	1225246-1225350	1	CRISPRCasFinder	no		csa3,cas3,WYL,casR,DinG,DEDDh	Orphan	CCAGTATCACCGATTGTCACAAATGAA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,casR,DinG,DEDDh	NA|173aa|up_2|NZ_CP019980.1_1221462_1221981_+,NA	NA|216aa|up_9|NZ_CP019980.1_1214694_1215342_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|288aa|up_8|NZ_CP019980.1_1215363_1216227_+	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|343aa|up_7|NZ_CP019980.1_1216515_1217544_+	pfam13303, PTS_EIIC_2, Phosphotransferase system, EIIC	NA|409aa|up_6|NZ_CP019980.1_1217643_1218870_+	COG3919, COG3919, Predicted ATP-grasp enzyme [General function prediction only]	NA|105aa|up_5|NZ_CP019980.1_1219230_1219545_-	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|359aa|up_4|NZ_CP019980.1_1219711_1220788_+	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|174aa|up_3|NZ_CP019980.1_1220846_1221368_+	PRK03114, PRK03114, DUF84 family protein	NA|173aa|up_2|NZ_CP019980.1_1221462_1221981_+	NA	NA|275aa|up_1|NZ_CP019980.1_1222051_1222876_+	PRK13668, PRK13668, hypothetical protein; Provisional	NA|205aa|up_0|NZ_CP019980.1_1222872_1223487_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|438aa|down_0|NZ_CP019980.1_1227189_1228503_+	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional	NA|169aa|down_1|NZ_CP019980.1_1228616_1229123_+	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]	NA|170aa|down_2|NZ_CP019980.1_1229254_1229764_+	pfam12732, YtxH, YtxH-like protein	NA|719aa|down_3|NZ_CP019980.1_1229988_1232145_-	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning]	NA|362aa|down_4|NZ_CP019980.1_1232317_1233403_+	PRK12595, PRK12595, bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed	NA|335aa|down_5|NZ_CP019980.1_1233579_1234584_+	TIGR01481, catabolite_control_protein_A, catabolite control protein A	NA|387aa|down_6|NZ_CP019980.1_1234674_1235835_-	cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes	NA|216aa|down_7|NZ_CP019980.1_1235834_1236482_-	cd04584, CBS_pair_AcuB_like, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the ACT domain	NA|211aa|down_8|NZ_CP019980.1_1236506_1237139_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|574aa|down_9|NZ_CP019980.1_1237666_1239388_+	PRK04319, PRK04319, acetyl-CoA synthetase; Provisional
GCF_002982115.1_ASM298211v1	NZ_CP019980	Lysinibacillus sphaericus strain DSM 28 chromosome, complete genome	2	2465444-2465589	1	CRT	no		csa3,cas3,WYL,casR,DinG,DEDDh	Orphan	TGTCTGGACTTTCTTGTCC	19	1	1	2465550-2465570	NZ_CP019980.1_563924-563944	NA	3	3	Orphan	csa3,cas3,WYL,casR,DinG,DEDDh	NA|441aa|up_9|NZ_CP019980.1_2452546_2453869_+,NA|63aa|down_5|NZ_CP019980.1_2471586_2471775_+	NA|441aa|up_9|NZ_CP019980.1_2452546_2453869_+	NA	NA|332aa|up_8|NZ_CP019980.1_2454004_2455000_-	cd16413, DGQHR_domain, DGQHR motif containing domain	NA|120aa|up_7|NZ_CP019980.1_2455132_2455492_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|360aa|up_6|NZ_CP019980.1_2455737_2456817_-	TIGR02887, Spore_germination_protein_B3, germination protein, Ger(x)C family	NA|381aa|up_5|NZ_CP019980.1_2456791_2457934_-	pfam03845, Spore_permease, Spore germination protein	NA|492aa|up_4|NZ_CP019980.1_2457938_2459414_-	pfam03323, GerA, Bacillus/Clostridium GerA spore germination protein	NA|121aa|up_3|NZ_CP019980.1_2460227_2460590_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|372aa|up_2|NZ_CP019980.1_2460717_2461833_+	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|278aa|up_1|NZ_CP019980.1_2461837_2462671_+	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase	NA|753aa|up_0|NZ_CP019980.1_2462801_2465060_+	PRK02471, PRK02471, bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	NA|207aa|down_0|NZ_CP019980.1_2466080_2466701_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|112aa|down_1|NZ_CP019980.1_2467260_2467596_+	pfam04341, DUF485, Protein of unknown function, DUF485	NA|518aa|down_2|NZ_CP019980.1_2467596_2469150_+	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain	NA|113aa|down_3|NZ_CP019980.1_2469609_2469948_+	pfam04341, DUF485, Protein of unknown function, DUF485	NA|515aa|down_4|NZ_CP019980.1_2469944_2471489_+	PRK09395, actP, cation/acetate symporter ActP	NA|63aa|down_5|NZ_CP019980.1_2471586_2471775_+	NA	NA|250aa|down_6|NZ_CP019980.1_2471798_2472548_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|250aa|down_7|NZ_CP019980.1_2472537_2473287_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|258aa|down_8|NZ_CP019980.1_2473261_2474035_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|98aa|down_9|NZ_CP019980.1_2474031_2474325_-	pfam01910, Thiamine_BP, Thiamine-binding protein
GCF_002982115.1_ASM298211v1	NZ_CP019980	Lysinibacillus sphaericus strain DSM 28 chromosome, complete genome	3	3794258-3794352	2	CRISPRCasFinder	no		csa3,cas3,WYL,casR,DinG,DEDDh	Orphan	TAAATTGTTTGAGTGACTGGCAC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,casR,DinG,DEDDh	NA,NA	NA|448aa|up_9|NZ_CP019980.1_3783386_3784730_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|326aa|up_8|NZ_CP019980.1_3784777_3785755_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|372aa|up_7|NZ_CP019980.1_3785758_3786874_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|186aa|up_6|NZ_CP019980.1_3787269_3787827_+	PRK00150, def, peptide deformylase; Reviewed	NA|263aa|up_5|NZ_CP019980.1_3788088_3788877_-	PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional	NA|367aa|up_4|NZ_CP019980.1_3788866_3789967_-	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional	NA|328aa|up_3|NZ_CP019980.1_3789981_3790965_-	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|542aa|up_2|NZ_CP019980.1_3790967_3792593_-	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|251aa|up_1|NZ_CP019980.1_3792585_3793338_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|253aa|up_0|NZ_CP019980.1_3793485_3794244_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|70aa|down_0|NZ_CP019980.1_3795562_3795772_+	PRK13667, PRK13667, hypothetical protein; Provisional	NA|556aa|down_1|NZ_CP019980.1_3795777_3797445_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|278aa|down_2|NZ_CP019980.1_3797825_3798659_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|1030aa|down_3|NZ_CP019980.1_3798758_3801848_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|166aa|down_4|NZ_CP019980.1_3802058_3802556_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|841aa|down_5|NZ_CP019980.1_3802861_3805384_-	COG2898, COG2898, Uncharacterized conserved protein [Function unknown]	NA|221aa|down_6|NZ_CP019980.1_3805494_3806157_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|151aa|down_7|NZ_CP019980.1_3806337_3806790_-	cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain	NA|181aa|down_8|NZ_CP019980.1_3807029_3807572_-	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides	NA|181aa|down_9|NZ_CP019980.1_3807976_3808519_+	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain
GCF_002982115.1_ASM298211v1	NZ_CP019980	Lysinibacillus sphaericus strain DSM 28 chromosome, complete genome	4	4161007-4161182	3	CRISPRCasFinder	no		csa3,cas3,WYL,casR,DinG,DEDDh	Orphan	TCACCAGGTGTTGGCACTGTTGCATC	26	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,WYL,casR,DinG,DEDDh	NA|167aa|up_9|NZ_CP019980.1_4141450_4141951_-,NA|152aa|up_6|NZ_CP019980.1_4147254_4147710_-,NA|61aa|down_5|NZ_CP019980.1_4166225_4166408_-	NA|167aa|up_9|NZ_CP019980.1_4141450_4141951_-	NA	NA|282aa|up_8|NZ_CP019980.1_4144325_4145171_-	cd01107, HTH_BmrR, Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator	NA|190aa|up_7|NZ_CP019980.1_4146249_4146819_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|152aa|up_6|NZ_CP019980.1_4147254_4147710_-	NA	NA|94aa|up_5|NZ_CP019980.1_4149664_4149946_-	pfam09524, Phg_2220_C, Conserved phage C-terminus (Phg_2220_C)	NA|291aa|up_4|NZ_CP019980.1_4150672_4151545_-	TIGR01230, Agmatinase_Agmatine_ureohydrolase_AUH	NA|685aa|up_3|NZ_CP019980.1_4151855_4153910_+	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|172aa|up_2|NZ_CP019980.1_4154255_4154771_-	pfam08741, YwhD, YwhD family	NA|62aa|up_1|NZ_CP019980.1_4154896_4155082_+	PRK02220, PRK02220, 4-oxalocrotonate tautomerase; Provisional	NA|223aa|up_0|NZ_CP019980.1_4155184_4155853_+	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|435aa|down_0|NZ_CP019980.1_4161805_4163110_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|76aa|down_1|NZ_CP019980.1_4163292_4163520_-	pfam07293, DUF1450, Protein of unknown function (DUF1450)	NA|217aa|down_2|NZ_CP019980.1_4163752_4164403_+	TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family	NA|278aa|down_3|NZ_CP019980.1_4164439_4165273_-	cd16443, LplA, lipoate-protein ligase	NA|251aa|down_4|NZ_CP019980.1_4165436_4166189_+	PRK12276, PRK12276, putative heme peroxidase; Provisional	NA|61aa|down_5|NZ_CP019980.1_4166225_4166408_-	NA	NA|140aa|down_6|NZ_CP019980.1_4167336_4167756_+	COG3773, SleB, Cell wall hydrolyses involved in spore germination [Cell envelope biogenesis, outer membrane]	NA|112aa|down_7|NZ_CP019980.1_4167776_4168112_+	pfam09671, Spore_GerQ, Spore coat protein (Spore_GerQ)	NA|397aa|down_8|NZ_CP019980.1_4168213_4169404_-	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085	NA|127aa|down_9|NZ_CP019980.1_4169640_4170021_-	COG2363, COG2363, Uncharacterized small membrane protein [Function unknown]
GCF_002982115.1_ASM298211v1	NZ_CP019980	Lysinibacillus sphaericus strain DSM 28 chromosome, complete genome	5	4402600-4402692	4	CRISPRCasFinder	no	csa3	csa3,cas3,WYL,casR,DinG,DEDDh	Type I-A	GTGCCAGTCACTCAAACAATTCTCACACAATTT	33	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,casR,DinG,DEDDh	NA,NA|207aa|down_0|NZ_CP019980.1_4403736_4404357_+,NA|72aa|down_2|NZ_CP019980.1_4405877_4406093_-	NA|260aa|up_9|NZ_CP019980.1_4391479_4392259_-	pfam11079, YqhG, Bacterial protein YqhG of unknown function	NA|505aa|up_8|NZ_CP019980.1_4392373_4393888_-	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|224aa|up_7|NZ_CP019980.1_4394210_4394882_+	TIGR04169, perox_w_seleSAM, alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein	NA|194aa|up_6|NZ_CP019980.1_4395058_4395640_+	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|319aa|up_5|NZ_CP019980.1_4395652_4396609_+	pfam04397, LytTR, LytTr DNA-binding domain	NA|283aa|up_4|NZ_CP019980.1_4396753_4397602_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|234aa|up_3|NZ_CP019980.1_4397598_4398300_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|384aa|up_2|NZ_CP019980.1_4398353_4399505_-	pfam02655, ATP-grasp_3, ATP-grasp domain	NA|194aa|up_1|NZ_CP019980.1_4399665_4400247_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|456aa|up_0|NZ_CP019980.1_4400346_4401714_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|207aa|down_0|NZ_CP019980.1_4403736_4404357_+	NA	NA|200aa|down_1|NZ_CP019980.1_4405252_4405852_+	pfam16717, RAC_head, Ribosome-associated complex head domain	NA|72aa|down_2|NZ_CP019980.1_4405877_4406093_-	NA	NA|395aa|down_3|NZ_CP019980.1_4406510_4407695_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|143aa|down_4|NZ_CP019980.1_4407740_4408169_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|206aa|down_5|NZ_CP019980.1_4408572_4409190_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|729aa|down_6|NZ_CP019980.1_4409313_4411500_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|505aa|down_7|NZ_CP019980.1_4411576_4413091_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|302aa|down_8|NZ_CP019980.1_4413248_4414154_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|343aa|down_9|NZ_CP019980.1_4414330_4415359_-	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
