assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002983645.1_ASM298364v1	NZ_CP027394	Escherichia coli O104:H4 strain FDAARGOS_349 chromosome, complete genome	1	498903-499033	1	CRISPRCasFinder	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PrimPol	Orphan	CCGGGTTAACCCAATCGGCTTCAGGCTGCTGCGGTTGGTGT	41	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PrimPol	NA|60aa|up_7|NZ_CP027394.1_494162_494342_-,NA|35aa|up_5|NZ_CP027394.1_494952_495057_-,NA|361aa|up_0|NZ_CP027394.1_497767_498850_-,NA|181aa|down_3|NZ_CP027394.1_500599_501142_+,NA|128aa|down_5|NZ_CP027394.1_502400_502784_+,NA|238aa|down_6|NZ_CP027394.1_502787_503501_+,NA|120aa|down_7|NZ_CP027394.1_503532_503892_+,NA|70aa|down_8|NZ_CP027394.1_503860_504070_-	NA|106aa|up_9|NZ_CP027394.1_493290_493608_+	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|162aa|up_8|NZ_CP027394.1_493658_494144_-	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only]	NA|60aa|up_7|NZ_CP027394.1_494162_494342_-	NA	NA|71aa|up_6|NZ_CP027394.1_494551_494764_-	pfam01848, HOK_GEF, Hok/gef family	NA|35aa|up_5|NZ_CP027394.1_494952_495057_-	NA	NA|195aa|up_4|NZ_CP027394.1_495172_495757_-	pfam04448, DUF551, Protein of unknown function (DUF551)	NA|132aa|up_3|NZ_CP027394.1_495813_496209_-	pfam06163, DUF977, Bacterial protein of unknown function (DUF977)	NA|257aa|up_2|NZ_CP027394.1_496224_496995_-	pfam07789, DUF1627, Protein of unknown function (DUF1627)	NA|247aa|up_1|NZ_CP027394.1_497020_497761_-	PRK12377, PRK12377, putative replication protein; Provisional	NA|361aa|up_0|NZ_CP027394.1_497767_498850_-	NA	NA|99aa|down_0|NZ_CP027394.1_499103_499400_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|67aa|down_1|NZ_CP027394.1_499538_499739_-	pfam09048, Cro, Cro	NA|238aa|down_2|NZ_CP027394.1_499839_500553_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|181aa|down_3|NZ_CP027394.1_500599_501142_+	NA	NA|259aa|down_4|NZ_CP027394.1_501129_501906_+	pfam08861, DUF1828, Domain of unknown function DUF1828	NA|128aa|down_5|NZ_CP027394.1_502400_502784_+	NA	NA|238aa|down_6|NZ_CP027394.1_502787_503501_+	NA	NA|120aa|down_7|NZ_CP027394.1_503532_503892_+	NA	NA|70aa|down_8|NZ_CP027394.1_503860_504070_-	NA	NA|74aa|down_9|NZ_CP027394.1_504526_504748_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed
GCF_002983645.1_ASM298364v1	NZ_CP027394	Escherichia coli O104:H4 strain FDAARGOS_349 chromosome, complete genome	2	1848351-1848440	2	CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PrimPol	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC	29	0	0	NA	NA	I-E	1	1	TypeI-E	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PrimPol	NA,NA	NA|254aa|up_9|NZ_CP027394.1_1840163_1840925_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP027394.1_1840905_1841955_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP027394.1_1841951_1842431_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP027394.1_1842430_1843141_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP027394.1_1843159_1843471_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP027394.1_1843664_1843988_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP027394.1_1844037_1844643_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP027394.1_1844642_1846070_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP027394.1_1846071_1846980_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP027394.1_1847231_1848269_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP027394.1_1848536_1848830_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP027394.1_1848829_1849750_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP027394.1_1849746_1850397_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP027394.1_1850378_1851125_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP027394.1_1851135_1852191_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP027394.1_1852202_1852739_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP027394.1_1852735_1854298_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP027394.1_1854395_1857095_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP027394.1_1858635_1858788_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP027394.1_1859052_1859787_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_002983645.1_ASM298364v1	NZ_CP027394	Escherichia coli O104:H4 strain FDAARGOS_349 chromosome, complete genome	3	1875487-1876308	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PrimPol	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,GGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,28	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PrimPol	NA,NA|47aa|down_1|NZ_CP027394.1_1877457_1877598_+	NA|424aa|up_9|NZ_CP027394.1_1864130_1865402_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP027394.1_1865392_1865653_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP027394.1_1865669_1866245_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP027394.1_1866392_1867253_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP027394.1_1867249_1868029_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP027394.1_1868006_1869416_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP027394.1_1869437_1870892_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP027394.1_1870961_1871747_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP027394.1_1872065_1873343_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP027394.1_1873369_1874848_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP027394.1_1876647_1877319_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP027394.1_1877457_1877598_+	NA	NA|433aa|down_2|NZ_CP027394.1_1878543_1879842_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP027394.1_1879929_1881567_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP027394.1_1881794_1882586_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP027394.1_1882656_1882992_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP027394.1_1882991_1883240_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP027394.1_1883317_1885552_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP027394.1_1885599_1886901_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP027394.1_1886957_1889714_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCF_002983645.1_ASM298364v1	NZ_CP027394	Escherichia coli O104:H4 strain FDAARGOS_349 chromosome, complete genome	4	4448788-4448884	4	CRISPRCasFinder	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PrimPol	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,PrimPol	NA,NA	NA|454aa|up_9|NZ_CP027394.1_4436667_4438029_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP027394.1_4438085_4439387_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP027394.1_4439408_4440554_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP027394.1_4440682_4441468_-	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|412aa|up_5|NZ_CP027394.1_4441478_4442714_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP027394.1_4442735_4443785_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP027394.1_4444101_4445769_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP027394.1_4445778_4447038_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP027394.1_4447048_4447864_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP027394.1_4447860_4448754_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP027394.1_4448948_4450016_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP027394.1_4450012_4450522_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP027394.1_4450639_4451362_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP027394.1_4451364_4451859_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP027394.1_4452032_4453418_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP027394.1_4453453_4453975_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP027394.1_4454082_4454295_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP027394.1_4454296_4455163_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP027394.1_4455643_4456186_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP027394.1_4456405_4457098_+	PRK15195, PRK15195, molecular chaperone FimC
