The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP027402	Enterococcus faecium strain FDAARGOS_323 chromosome, complete genome	2550968	112332	120804	2550968		Streptococcus_phage(66.67%)	9	NA	NA
WP_002294039.1|112332_112977_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
WP_002292340.1|112991_113321_+	cyclic-di-AMP receptor	NA	NA	NA	NA	NA
WP_002288071.1|113334_114273_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	34.4	3.3e-35
WP_002288073.1|114308_115133_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_002288076.1|115125_115473_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
WP_002288078.1|115541_116414_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.4	3.1e-88
WP_002294035.1|116522_117644_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002288081.1|117697_118300_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.6	1.7e-53
WP_002288083.1|118614_120804_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.6	1.8e-286
>prophage 2
NZ_CP027402	Enterococcus faecium strain FDAARGOS_323 chromosome, complete genome	2550968	502072	511133	2550968		Gordonia_phage(16.67%)	9	NA	NA
WP_002288023.1|502072_503368_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	4.5e-19
WP_002297115.1|503547_503925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288021.1|504180_504909_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.4	4.6e-45
WP_002295474.1|504908_505163_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002288017.1|505164_505836_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_105882646.1|505836_508059_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.3	3.2e-150
WP_002288013.1|508043_509483_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	5.3e-53
WP_002288011.1|509505_510558_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.7	2.7e-62
WP_002288010.1|510554_511133_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	1.3e-26
>prophage 3
NZ_CP027402	Enterococcus faecium strain FDAARGOS_323 chromosome, complete genome	2550968	960751	1074784	2550968	protease,head,tail,tRNA,terminase,portal,integrase,transposase,holin,capsid	Enterococcus_phage(26.92%)	124	1014986:1015009	1053571:1053594
WP_002301259.1|960751_961675_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_063285916.1|962043_964407_-	phosphoketolase family protein	NA	NA	NA	NA	NA
WP_002288514.1|964854_965028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294142.1|965184_965532_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_002294141.1|965558_967865_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.7	3.6e-19
WP_002288509.1|967877_968189_-	YlxQ-related RNA-binding protein	NA	NA	NA	NA	NA
WP_002288501.1|968185_968479_-	YlxR family protein	NA	NA	NA	NA	NA
WP_002319370.1|968500_969676_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_002326917.1|969698_970172_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_002319369.1|970315_974668_-	PolC-type DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	41.4	3.9e-22
WP_002319368.1|974879_976589_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_002326916.1|976656_977925_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_002296531.1|978085_978886_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_002294134.1|978882_979695_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	46.8	2.0e-25
WP_002293875.1|979889_980447_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_002293877.1|980449_981172_-	UMP kinase	NA	NA	NA	NA	NA
WP_002293878.1|981307_982189_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_002293880.1|982287_983070_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_002293881.1|983428_983908_+	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002326915.1|984124_985216_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA	NA
WP_002326914.1|986337_988029_-|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.8	1.3e-74
WP_002339976.1|988448_989396_-	carbamate kinase	NA	NA	NA	NA	NA
WP_002288437.1|989510_990530_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_002288439.1|990620_991850_-	arginine deiminase	NA	NA	NA	NA	NA
WP_002288442.1|992310_993012_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_002322592.1|993620_994637_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.4	5.4e-60
WP_002288445.1|994633_995098_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_002339975.1|995104_995647_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_002288447.1|995630_996455_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_002288449.1|996543_997524_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.9	5.8e-19
WP_002288451.1|997547_999032_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_002288452.1|999043_1000033_-	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	36.8	2.1e-48
WP_002288457.1|1000281_1000449_+	DUF3042 family protein	NA	NA	NA	NA	NA
WP_063285919.1|1000510_1002322_-	FAD/NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_002288459.1|1002318_1002684_-	DUF488 family protein	NA	NA	NA	NA	NA
WP_002288461.1|1002846_1003242_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_002288462.1|1003259_1004222_-	ROK family glucokinase	NA	NA	NA	NA	NA
WP_002293902.1|1004221_1004434_-	YqgQ family protein	NA	NA	NA	NA	NA
WP_002289885.1|1004454_1005153_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_002289886.1|1005172_1005715_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_002319727.1|1005846_1006851_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002293904.1|1006847_1007837_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002319728.1|1007833_1008640_-	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	32.1	1.0e-13
WP_002293906.1|1008805_1009762_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002296121.1|1009838_1010357_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	39.1	7.1e-24
WP_002296119.1|1010444_1010594_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002288531.1|1010821_1011268_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_002293915.1|1011462_1013358_-	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y2L7	Organic_Lake_phycodnavirus	26.2	6.0e-20
WP_002317802.1|1013682_1014657_-	choloylglycine hydrolase family protein	NA	M1H001	Paramecium_bursaria_Chlorella_virus	29.7	6.6e-23
1014986:1015009	attL	TGATATAAGGAAGGTACAGGATTT	NA	NA	NA	NA
WP_105882681.1|1015216_1016236_-	peptidoglycan recognition protein	NA	A0A1G5SA77	Enterococcus_phage	66.1	5.4e-60
WP_002302122.1|1016246_1016444_-|holin	phage holin	holin	A0A0S2MYF6	Enterococcus_phage	85.9	7.8e-24
WP_002322123.1|1016459_1016702_-	hemolysin XhlA family protein	NA	D2J075	Enterococcus_phage	68.4	2.1e-23
WP_002323938.1|1016771_1017581_-	glycerophosphodiester phosphodiesterase family protein	NA	A0A0S2MYI4	Enterococcus_phage	23.1	1.7e-08
WP_002323937.1|1017623_1018346_-	glycerophosphodiester phosphodiesterase family protein	NA	A0A0S2MYI4	Enterococcus_phage	30.6	3.9e-12
WP_105882682.1|1018345_1020622_-	hypothetical protein	NA	A0A096XSZ6	Enterococcus_phage	33.7	1.1e-60
WP_002334517.1|1020645_1022937_-|tail	phage tail protein	tail	A0A1D3SNL1	Enterococcus_phage	30.2	2.3e-90
WP_105882683.1|1022946_1023684_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_002347402.1|1023720_1024674_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002334515.1|1024801_1028221_-|tail	phage tail tape measure protein	tail	A0A1D3SNL5	Enterococcus_phage	41.5	8.7e-78
WP_016925825.1|1028237_1028420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286510.1|1028422_1028785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002318244.1|1028806_1029412_-	hypothetical protein	NA	Q8W5Z9	Listeria_phage	41.2	6.7e-34
WP_002286516.1|1029423_1029828_-	hypothetical protein	NA	R4IBU7	Listeria_phage	29.5	6.1e-07
WP_002318246.1|1029820_1030222_-	hypothetical protein	NA	A0A1B1P759	Bacillus_phage	34.1	3.0e-14
WP_002334514.1|1030211_1030565_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_002334513.1|1030554_1030866_-	hypothetical protein	NA	A0A1B1P751	Bacillus_phage	43.5	1.8e-11
WP_002337504.1|1030862_1031738_-	hypothetical protein	NA	D2IYX3	Enterococcus_phage	73.9	2.5e-130
WP_002318250.1|1031747_1032908_-|capsid	phage major capsid protein	capsid	A0A1B1P752	Bacillus_phage	50.4	2.7e-100
WP_002334510.1|1032907_1033594_-|protease	Clp protease ClpP	protease	A0A2I6PDD0	Staphylococcus_phage	40.2	6.1e-31
WP_002334509.1|1033556_1034735_-|portal	phage portal protein	portal	A0A1B1P754	Bacillus_phage	40.2	1.9e-80
WP_002286533.1|1034754_1036449_-|terminase	terminase large subunit	terminase	A0A1B1P766	Bacillus_phage	49.6	3.0e-148
WP_002286538.1|1036426_1036741_-|terminase	terminase	terminase	A0A1S7FYW6	Listeria_phage	37.9	3.3e-08
WP_105882684.1|1036842_1037124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305386.1|1037128_1037473_-	HNH endonuclease	NA	A0A1B1P757	Bacillus_phage	58.1	1.0e-26
WP_192574436.1|1037498_1037666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105882685.1|1037975_1038200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_104775162.1|1038473_1038890_-	autolysin	NA	C9E2P5	Enterococcus_phage	67.4	1.8e-46
WP_002323916.1|1038966_1039263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105882686.1|1039259_1039463_-	toxin PIN	NA	NA	NA	NA	NA
WP_104887982.1|1039469_1039700_-	hypothetical protein	NA	A0A0S2MYD2	Enterococcus_phage	50.7	3.0e-11
WP_104833043.1|1041171_1041474_-	MazG-like family protein	NA	D2IZY1	Enterococcus_phage	71.7	1.7e-33
WP_105882687.1|1041598_1041913_-	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	37.4	1.6e-10
WP_002343499.1|1041912_1042203_-	hypothetical protein	NA	D2IZR3	Enterococcus_phage	43.4	1.4e-13
WP_080343616.1|1042196_1042508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105882688.1|1042504_1042666_-	antitoxin	NA	NA	NA	NA	NA
WP_002321420.1|1042680_1043040_-	DUF1064 domain-containing protein	NA	A0A1P8BKR1	Lactococcus_phage	48.3	1.1e-18
WP_002323158.1|1043036_1043888_-	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	28.7	6.2e-25
WP_105882689.1|1043904_1044744_-	phage replisome organizer N-terminal domain-containing protein	NA	J7KBV5	Streptococcus_phage	75.4	1.8e-48
WP_105882690.1|1044750_1045437_-	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.1	4.1e-88
WP_002286557.1|1045442_1046114_-	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.4	4.2e-29
WP_105882691.1|1046106_1046448_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323904.1|1046594_1047002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010725635.1|1047115_1047301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010725634.1|1047380_1047725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010725633.1|1047707_1047890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010725632.1|1047933_1048104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323902.1|1048152_1048413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010722962.1|1048552_1048756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002343597.1|1048770_1049547_-	phage antirepressor KilAC domain-containing protein	NA	A0A1Q1PVU2	Staphylococcus_phage	54.5	1.9e-73
WP_002290615.1|1049846_1050167_+	helix-turn-helix transcriptional regulator	NA	A0A1B0Y3N1	Lactobacillus_phage	35.1	5.0e-12
WP_002329428.1|1050184_1050607_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002329429.1|1050689_1051325_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	52.6	5.1e-32
WP_002332474.1|1051512_1052169_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002333665.1|1052322_1053471_+|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	38.9	1.2e-68
WP_002296332.1|1053809_1054376_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
1053571:1053594	attR	TGATATAAGGAAGGTACAGGATTT	NA	NA	NA	NA
WP_002296335.1|1055928_1056279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002317579.1|1056370_1056790_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_002296337.1|1056790_1057135_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_002287776.1|1057484_1058081_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	41.7	8.7e-34
WP_002317578.1|1058204_1060004_+	glycerophosphoryl diester phosphodiesterase membrane domain-containing protein	NA	I6XE30	Staphylococcus_phage	26.5	5.3e-10
WP_002297633.1|1060281_1060494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293931.1|1060933_1061083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288573.1|1061350_1061737_+	YxeA family protein	NA	NA	NA	NA	NA
WP_002288574.1|1062044_1063391_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_002317577.1|1063502_1064852_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_002288576.1|1064968_1066222_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	7.7e-24
WP_002288577.1|1066292_1066778_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_002293935.1|1066800_1067559_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	36.9	8.5e-26
WP_002322842.1|1067574_1068753_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	48.9	5.1e-102
WP_002288584.1|1068982_1071103_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.1	2.8e-220
WP_002326907.1|1071325_1072051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288586.1|1072040_1072550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288588.1|1072619_1074068_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	1.7e-19
WP_002293942.1|1074067_1074784_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.7	1.0e-33
>prophage 4
NZ_CP027402	Enterococcus faecium strain FDAARGOS_323 chromosome, complete genome	2550968	2368809	2431329	2550968	protease,head,tail,bacteriocin,terminase,portal,integrase,holin,plate,capsid	Enterococcus_phage(38.1%)	80	2391846:2391864	2432997:2433015
WP_002304799.1|2368809_2369007_+|bacteriocin	leucocin A/sakacin P family class II bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002287810.1|2369008_2369320_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_002294600.1|2369423_2369570_+|bacteriocin	EntF family bacteriocin induction factor	bacteriocin	NA	NA	NA	NA
WP_002348775.1|2369645_2370893_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_002294602.1|2370907_2371660_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002294603.1|2372362_2372578_-|bacteriocin	Blp family class II bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002303465.1|2372596_2372833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105882774.1|2373090_2375244_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	27.8	3.1e-41
WP_002348772.1|2375212_2376628_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_002294607.1|2376660_2377695_+	signal peptide peptidase SppA	NA	A0A1C9LW82	Vibrio_phage	29.2	6.6e-13
WP_002294608.1|2377696_2378218_+	RDD family protein	NA	NA	NA	NA	NA
WP_002294609.1|2378214_2378601_+	DUF4064 domain-containing protein	NA	NA	NA	NA	NA
WP_002322652.1|2379550_2380120_+	DUF1836 domain-containing protein	NA	NA	NA	NA	NA
WP_002294132.1|2380106_2380967_+	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	24.4	4.6e-12
WP_002288850.1|2381156_2381861_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	41.6	5.8e-45
WP_105882775.1|2381865_2383701_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	37.7	5.2e-37
WP_002288852.1|2383697_2385014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288853.1|2385014_2385884_+	two-component system regulatory protein YycI	NA	NA	NA	NA	NA
WP_002288854.1|2385938_2386748_+	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	33.6	3.1e-34
WP_002288856.1|2386850_2387480_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_002288858.1|2387649_2388942_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002288860.1|2389017_2389680_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002288862.1|2389904_2390189_+	co-chaperone GroES	NA	A0A221S4M3	uncultured_virus	40.2	2.0e-12
WP_002290607.1|2390239_2391865_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.8	4.9e-156
2391846:2391864	attL	TGATGGGCGGTATGATGTA	NA	NA	NA	NA
WP_029743868.1|2391953_2393102_-|integrase	site-specific integrase	integrase	A0A1B1IMP1	Lactococcus_phage	48.4	5.1e-91
WP_002318510.1|2393196_2393898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002318512.1|2394022_2394454_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_070872871.1|2394471_2394795_-	helix-turn-helix transcriptional regulator	NA	Q9AZJ7	Lactococcus_phage	51.9	1.2e-13
WP_002321800.1|2395086_2395278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002326799.1|2395292_2396048_+	phage antirepressor KilAC domain-containing protein	NA	A0A1S5SE89	Streptococcus_phage	70.1	1.8e-92
WP_002318516.1|2396007_2396307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002323127.1|2396354_2396639_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002311421.1|2396659_2396848_+	hypothetical protein	NA	D2IZW5	Enterococcus_phage	58.6	1.7e-07
WP_010725637.1|2397172_2397514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024635664.1|2397506_2398253_+	DUF1071 domain-containing protein	NA	A0A2I7RDU5	Vibrio_phage	52.2	4.4e-43
WP_010725638.1|2398258_2398945_+	hypothetical protein	NA	C9E2N1	Enterococcus_phage	70.0	6.4e-89
WP_104841932.1|2398947_2399697_+	helix-turn-helix domain-containing protein	NA	A0A1L2BY83	Clostridium_phage	54.0	1.3e-31
WP_033647178.1|2399708_2399978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002318523.1|2399983_2400148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_104841933.1|2400140_2400446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002311437.1|2400439_2400730_+	hypothetical protein	NA	D2IZR3	Enterococcus_phage	43.4	1.8e-13
WP_104841934.1|2400729_2401191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_104841935.1|2401174_2401357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_104841936.1|2401356_2401638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_104841937.1|2401634_2402057_+	hypothetical protein	NA	Q4ZD40	Staphylococcus_phage	37.0	4.6e-13
WP_002330295.1|2402049_2402553_+	DUF1642 domain-containing protein	NA	A0A0E3T929	Enterococcus_phage	60.7	5.4e-37
WP_002330294.1|2402549_2402852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002330293.1|2402848_2403034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002330292.1|2403030_2403240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002330291.1|2403236_2403524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002330289.1|2404115_2404583_+	ArpU family phage transcriptional regulator	NA	D7RWH7	Brochothrix_phage	28.5	3.2e-07
WP_025481898.1|2405359_2405590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_104841938.1|2405733_2406396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_104841939.1|2406442_2407291_+|terminase	small subunit of terminase	terminase	D2IYW0	Enterococcus_phage	63.8	1.2e-84
WP_005879783.1|2407277_2408522_+|terminase	PBSX family phage terminase large subunit	terminase	D2IYW1	Enterococcus_phage	81.2	4.3e-200
WP_002323927.1|2408534_2410034_+|portal	phage portal protein	portal	A0A097BY86	Enterococcus_phage	78.9	2.1e-222
WP_002330284.1|2410038_2410947_+|capsid	minor capsid protein	capsid	A0A1L2JXH2	Streptococcus_phage	59.1	4.8e-92
WP_104841940.1|2411055_2411292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002322712.1|2411440_2412043_+	DUF4355 domain-containing protein	NA	A0A097BY91	Enterococcus_phage	52.5	1.1e-36
WP_002322711.1|2412055_2412979_+|capsid	phage major capsid protein	capsid	A0A1B1V000	Enterococcus_phage	77.5	1.8e-139
WP_002322710.1|2412996_2413260_+	hypothetical protein	NA	D2J062	Enterococcus_phage	72.9	5.0e-10
WP_010725226.1|2413271_2413601_+|head,tail	phage head-tail connector protein	head,tail	A0A0S2MYD5	Enterococcus_phage	76.4	3.8e-39
WP_104841941.1|2413597_2413924_+	hypothetical protein	NA	C9E2J7	Enterococcus_phage	70.2	9.2e-38
WP_104841942.1|2413907_2414246_+	HK97 gp10 family phage protein	NA	Q77K21	Lactococcus_phage	58.9	7.3e-30
WP_002311462.1|2414245_2414638_+	hypothetical protein	NA	Q77K20	Lactococcus_phage	76.2	2.2e-49
WP_002311463.1|2414648_2415161_+|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	66.3	7.4e-58
WP_002293018.1|2415206_2415575_+|tail	tail assembly chaperone	tail	Q77RZ7	Lactococcus_phage	54.8	8.6e-24
WP_002318903.1|2415628_2415916_+	hypothetical protein	NA	D7RWD7	Brochothrix_phage	44.3	2.4e-13
WP_104841943.1|2415932_2419052_+|tail	phage tail tape measure protein	tail	Q9G097	Lactococcus_phage	79.5	1.4e-167
WP_104841951.1|2419084_2419852_+|tail	phage tail family protein	tail	D7RWD9	Brochothrix_phage	45.1	2.6e-59
WP_104841944.1|2419848_2422680_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A1P8BMB8	Lactococcus_phage	60.7	0.0e+00
WP_181055079.1|2422693_2424439_+|plate	BppU family phage baseplate upper protein	plate	Q9AZX4	Lactococcus_phage	41.4	8.2e-40
WP_002323707.1|2424451_2425210_+	hypothetical protein	NA	A0A067XGT4	Enterococcus_phage	32.5	1.5e-27
WP_104841946.1|2425225_2427451_+|plate	BppU family phage baseplate upper protein	plate	A0A060AI60	Enterococcus_phage	40.2	7.4e-62
WP_104841947.1|2427462_2427909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002290625.1|2427910_2428048_+	XkdX family protein	NA	NA	NA	NA	NA
WP_002400897.1|2428085_2428379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302122.1|2428401_2428599_+|holin	phage holin	holin	A0A0S2MYF6	Enterococcus_phage	85.9	7.8e-24
WP_104841948.1|2428609_2429629_+	peptidoglycan recognition protein	NA	A0A1G5SA77	Enterococcus_phage	66.7	1.9e-60
WP_104841949.1|2429727_2431329_+	SIR2 family protein	NA	A0A1S5SA14	Streptococcus_phage	41.5	1.0e-76
2432997:2433015	attR	TGATGGGCGGTATGATGTA	NA	NA	NA	NA
>prophage 1
NZ_CP027401	Enterococcus faecium strain FDAARGOS_323 plasmid unnamed, complete sequence	159454	393	69647	159454	integrase,transposase,holin	Streptococcus_phage(58.33%)	58	28332:28355	52378:52401
WP_002403341.1|393_993_+	SAM-dependent DNA methyltransferase	NA	A0A2H4PQP4	Staphylococcus_phage	41.9	7.4e-33
WP_105882601.1|1920_2121_+	helix-turn-helix transcriptional regulator	NA	A0A2K5B261	Erysipelothrix_phage	55.6	1.8e-12
WP_105882602.1|2169_5427_+	DEAD/DEAH box helicase family protein	NA	A0A2K5B2B9	Erysipelothrix_phage	81.0	0.0e+00
WP_105882603.1|5427_6150_+	DUF4391 domain-containing protein	NA	A0A2K5B2C0	Erysipelothrix_phage	50.9	1.7e-68
WP_105882604.1|6177_8157_+	site-specific DNA-methyltransferase	NA	A0A2K5B2C1	Erysipelothrix_phage	42.9	1.8e-139
WP_105882605.1|8177_11168_+	DEAD/DEAH box helicase family protein	NA	A0A2K5B2C2	Erysipelothrix_phage	70.6	0.0e+00
WP_105882610.1|11334_11649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_098188703.1|12291_13454_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002296840.1|15069_16257_-|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
WP_079504102.1|16927_17836_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002316138.1|17891_18389_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_079504103.1|18385_19120_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002295761.1|19862_20417_+|integrase	tyrosine-type recombinase/integrase	integrase	W8CYP1	Bacillus_phage	46.1	8.6e-36
WP_002347402.1|21480_22434_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.9	9.6e-35
WP_002297440.1|24495_25581_-	tyrosine recombinase XerS	NA	NA	NA	NA	NA
WP_002297441.1|25913_26147_+	addiction module antitoxin	NA	NA	NA	NA	NA
WP_002297442.1|26143_26551_+	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A0N9SKD8	Staphylococcus_phage	39.1	2.3e-14
28332:28355	attL	CAAAAAAACTGTTGCCATTCCACA	NA	NA	NA	NA
WP_002290348.1|28390_28741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010726502.1|28733_30059_-	Y-family DNA polymerase	NA	M1Q231	Streptococcus_phage	43.2	1.7e-98
WP_002338090.1|32120_33338_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	99.8	1.1e-232
WP_000814511.1|33419_33623_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_000857133.1|34083_34314_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000804885.1|34310_34733_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_001227347.1|35237_35591_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000336323.1|35650_35818_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_000691749.1|35936_37856_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.4	0.0e+00
WP_001814923.1|37871_37988_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_001224318.1|38232_39165_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_000769868.1|39161_40163_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_000804748.1|40159_42337_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_002338091.1|42339_44787_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	99.4	0.0e+00
WP_000506270.1|44770_45277_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000342539.1|45251_45749_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_001009056.1|45865_46087_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000398284.1|46129_47335_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_000879507.1|47357_47510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813488.1|47512_48898_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000985015.1|48926_49313_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000420682.1|49328_49643_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_086956687.1|49880_51043_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002298365.1|52451_53084_-	HAD family phosphatase	NA	A0A1D8KNV9	Synechococcus_phage	28.4	7.8e-09
52378:52401	attR	TGTGGAATGGCAACAGTTTTTTTG	NA	NA	NA	NA
WP_002347642.1|53096_55820_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA	NA
WP_002347643.1|55956_56922_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002298371.1|56975_57788_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_002298373.1|57801_58575_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002298375.1|58588_59059_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002343823.1|59055_59472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016631195.1|59796_60639_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010726506.1|60942_62457_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	38.3	1.1e-45
WP_002285820.1|63482_64688_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	30.7	2.5e-35
WP_179188977.1|64741_65425_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.2	2.1e-124
WP_005874952.1|65752_66433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010726507.1|67120_67759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002320550.1|67751_68189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002320549.1|68204_68456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296239.1|68455_68662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010726508.1|69110_69371_-	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	50.7	6.9e-12
WP_002295624.1|69524_69647_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
>prophage 2
NZ_CP027401	Enterococcus faecium strain FDAARGOS_323 plasmid unnamed, complete sequence	159454	81403	137218	159454	transposase	Staphylococcus_phage(37.5%)	47	NA	NA
WP_002301399.1|81403_82363_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.5	5.0e-31
WP_105882606.1|82326_82533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010730955.1|83040_84072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002316063.1|84091_84322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293510.1|84344_85151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002339834.1|85161_85806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105882607.1|85821_87027_-	glucosaminidase domain-containing protein	NA	Q6SEC2	Lactobacillus_prophage	41.8	4.8e-31
WP_002340490.1|87026_89051_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002340492.1|89213_89807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002340493.1|89807_90140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010706253.1|90191_92570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002331344.1|92566_95176_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_016631141.1|95175_97251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002295662.1|97320_97623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305229.1|97640_97883_-	DUF5415 family protein	NA	NA	NA	NA	NA
WP_002310966.1|97879_98344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016631142.1|98370_100461_-	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
WP_002314405.1|100457_100718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105882608.1|100730_101486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293487.1|101501_102254_-	class C sortase	NA	NA	NA	NA	NA
WP_016631144.1|102268_104245_-	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
WP_016631145.1|104297_104969_-	class A sortase	NA	NA	NA	NA	NA
WP_002322851.1|106054_106294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347362.1|106359_106599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002322486.1|107725_108058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323095.1|108897_109938_-	replication initiator protein A	NA	NA	NA	NA	NA
WP_010726498.1|110816_111995_-|transposase	IS256-like element ISEf1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.6	3.0e-30
WP_002290397.1|113470_113725_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_002290394.1|113725_114043_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_002347402.1|114751_115705_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.9	9.6e-35
WP_002288613.1|116514_117483_+	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002288615.1|117493_118309_+	fructoselysine 6-kinase	NA	NA	NA	NA	NA
WP_002288618.1|118376_119087_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002288620.1|119122_120364_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_002296840.1|120421_121609_-|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
WP_002298077.1|122143_123544_+	putative basic amino acid antiporter YfcC	NA	NA	NA	NA	NA
WP_002322961.1|123576_123744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002292678.1|124752_125082_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_002300557.1|125071_125359_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_002292680.1|125644_126502_+	ParA family protein	NA	F0PIG8	Enterococcus_phage	30.7	8.1e-33
WP_002292681.1|126502_127051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002300609.1|127988_128939_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA	NA
WP_002298230.1|129540_131385_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002289584.1|131440_132907_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA	NA
WP_002289586.1|132943_133786_+	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_002298232.1|133997_135290_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.9	3.2e-57
WP_002338106.1|136045_137218_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	99.6	2.5e-133
