assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002984195.1_ASM298419v1	NZ_CP027418	Providencia rettgeri strain FDAARGOS_330 chromosome, complete genome	1	668534-668633	1	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	AGGAGCATACAAAAGTATGTGACT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|646aa|up_9|NZ_CP027418.1_658988_660926_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|113aa|up_8|NZ_CP027418.1_661410_661749_+	TIGR03582, EF_0829, PRD domain protein EF_0829/AHA_3910	NA|122aa|up_7|NZ_CP027418.1_661781_662147_+	TIGR03577, EF_0830, conserved hypothetical protein EF_0830/AHA_3911	NA|99aa|up_6|NZ_CP027418.1_662146_662443_+	TIGR03578, EF_0831, conserved hypothetical protein EF_0831/AHA_3912	NA|264aa|up_5|NZ_CP027418.1_662469_663261_+	TIGR03580, EF_0832, conserved hypothetical protein EF_0832/AHA_3913	NA|217aa|up_4|NZ_CP027418.1_663263_663914_+	TIGR03579, EF_0833, conserved hypothetical protein EF_0833/AHA_3914	NA|380aa|up_3|NZ_CP027418.1_664132_665272_+	PRK09237, PRK09237, amidohydrolase/deacetylase family metallohydrolase	NA|371aa|up_2|NZ_CP027418.1_665255_666368_+	TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme	NA|247aa|up_1|NZ_CP027418.1_666369_667110_+	TIGR03581, EF_0839, conserved hypothetical protein EF_0839/AHA_3917	NA|361aa|up_0|NZ_CP027418.1_667258_668341_-	COG0348, NapH, Polyferredoxin [Energy production and conversion]	NA|291aa|down_0|NZ_CP027418.1_669281_670154_-	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|569aa|down_1|NZ_CP027418.1_670215_671922_+	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|125aa|down_2|NZ_CP027418.1_671968_672343_+	PRK12497, PRK12497, YraN family protein	NA|197aa|down_3|NZ_CP027418.1_673116_673707_+	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|192aa|down_4|NZ_CP027418.1_673716_674292_+	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|241aa|down_5|NZ_CP027418.1_674355_675078_-	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional	NA|217aa|down_6|NZ_CP027418.1_675086_675737_-	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB	NA|782aa|down_7|NZ_CP027418.1_675969_678315_-	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|469aa|down_8|NZ_CP027418.1_678615_680022_+	PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed	NA|164aa|down_9|NZ_CP027418.1_680120_680612_-	PRK11798, PRK11798, ClpXP protease specificity-enhancing factor; Provisional
GCF_002984195.1_ASM298419v1	NZ_CP027418	Providencia rettgeri strain FDAARGOS_330 chromosome, complete genome	2	3103461-3104451	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	csa3,cas3,WYL,DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Type I-F	GTTCACTGCCATACAGGCAGCTTAGAAAT,GTTCACTGCCATGCAGGCAGCTTAGAAA,GTTCACTGCCATNCAGGCAGCTTAGAAA	29,28,28	0	0	NA	NA	I-F:I-F:I-F	3,16,16	16	TypeI-F	csa3,cas3,WYL,DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|135aa|up_9|NZ_CP027418.1_3093364_3093769_+	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|286aa|up_8|NZ_CP027418.1_3093781_3094639_+	PRK06655, flgD, flagellar hook assembly protein FlgD	NA|407aa|up_7|NZ_CP027418.1_3094666_3095887_+	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|252aa|up_6|NZ_CP027418.1_3095902_3096658_+	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|261aa|up_5|NZ_CP027418.1_3096676_3097459_+	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|261aa|up_4|NZ_CP027418.1_3097540_3098323_+	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|368aa|up_3|NZ_CP027418.1_3098356_3099460_+	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|327aa|up_2|NZ_CP027418.1_3099459_3100440_+	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ	NA|548aa|up_1|NZ_CP027418.1_3100582_3102226_+	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated	NA|312aa|up_0|NZ_CP027418.1_3102254_3103190_+	PRK08027, flgL, flagellar hook-filament junction protein FlgL	cas1|325aa|down_0|NZ_CP027418.1_3104600_3105575_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1160aa|down_1|NZ_CP027418.1_3105571_3109051_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|423aa|down_2|NZ_CP027418.1_3109078_3110347_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|315aa|down_3|NZ_CP027418.1_3110343_3111288_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|341aa|down_4|NZ_CP027418.1_3111291_3112314_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|212aa|down_5|NZ_CP027418.1_3112322_3112958_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|260aa|down_6|NZ_CP027418.1_3114216_3114996_-	PRK05701, fliR, flagellar type III secretion system protein FliR	NA|90aa|down_7|NZ_CP027418.1_3114998_3115268_-	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|240aa|down_8|NZ_CP027418.1_3115276_3115996_-	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|153aa|down_9|NZ_CP027418.1_3116032_3116491_-	PRK11486, PRK11486, flagellar type III secretion system protein FliO
GCF_002984195.1_ASM298419v1	NZ_CP027418	Providencia rettgeri strain FDAARGOS_330 chromosome, complete genome	3	3113089-3113837	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	csa3,cas3,WYL,DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Type I-F	GTTCACTGCCGTATAGGCAGCTTAGAAA,GTTCACTGCCGTATAGGCAGCTTAGAAA,GTTCACTGCCGTATAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	11,12,12	12	TypeI-F	csa3,cas3,WYL,DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|368aa|up_9|NZ_CP027418.1_3098356_3099460_+	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|327aa|up_8|NZ_CP027418.1_3099459_3100440_+	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ	NA|548aa|up_7|NZ_CP027418.1_3100582_3102226_+	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated	NA|312aa|up_6|NZ_CP027418.1_3102254_3103190_+	PRK08027, flgL, flagellar hook-filament junction protein FlgL	cas1|325aa|up_5|NZ_CP027418.1_3104600_3105575_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1160aa|up_4|NZ_CP027418.1_3105571_3109051_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|423aa|up_3|NZ_CP027418.1_3109078_3110347_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|315aa|up_2|NZ_CP027418.1_3110343_3111288_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|341aa|up_1|NZ_CP027418.1_3111291_3112314_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|212aa|up_0|NZ_CP027418.1_3112322_3112958_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|260aa|down_0|NZ_CP027418.1_3114216_3114996_-	PRK05701, fliR, flagellar type III secretion system protein FliR	NA|90aa|down_1|NZ_CP027418.1_3114998_3115268_-	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|240aa|down_2|NZ_CP027418.1_3115276_3115996_-	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|153aa|down_3|NZ_CP027418.1_3116032_3116491_-	PRK11486, PRK11486, flagellar type III secretion system protein FliO	NA|139aa|down_4|NZ_CP027418.1_3116513_3116930_-	PRK07963, fliN, flagellar motor switch protein FliN; Validated	NA|336aa|down_5|NZ_CP027418.1_3116922_3117930_-	PRK06666, fliM, flagellar motor switch protein FliM; Validated	NA|160aa|down_6|NZ_CP027418.1_3117935_3118415_-	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed	NA|458aa|down_7|NZ_CP027418.1_3118579_3119953_-	PRK10118, PRK10118, flagellar hook length control protein FliK	NA|148aa|down_8|NZ_CP027418.1_3119953_3120397_-	PRK05689, fliJ, flagella biosynthesis chaperone FliJ	NA|455aa|down_9|NZ_CP027418.1_3120408_3121773_-	PRK07960, fliI, flagellum-specific ATP synthase FliI
GCF_002984195.1_ASM298419v1	NZ_CP027418	Providencia rettgeri strain FDAARGOS_330 chromosome, complete genome	4	3945245-3945355	4	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	GCTATGCTTTTTGACGGCATAGGG	24	1	1	3945269-3945289	NZ_CP027418.1_3766006-3766026	NA	2	2	Orphan	csa3,cas3,WYL,DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA|80aa|up_9|NZ_CP027418.1_3940525_3940765_-,NA|71aa|up_8|NZ_CP027418.1_3940768_3940981_-,NA|117aa|up_7|NZ_CP027418.1_3940984_3941335_-,NA|99aa|up_6|NZ_CP027418.1_3941339_3941636_-,NA|178aa|up_5|NZ_CP027418.1_3941650_3942184_-,NA|99aa|up_4|NZ_CP027418.1_3942176_3942473_-,NA|77aa|up_3|NZ_CP027418.1_3942469_3942700_-,NA|57aa|up_2|NZ_CP027418.1_3942702_3942873_-,NA|75aa|down_0|NZ_CP027418.1_3945655_3945880_-,NA|111aa|down_4|NZ_CP027418.1_3947810_3948143_+,NA|84aa|down_5|NZ_CP027418.1_3948151_3948403_+,NA|60aa|down_8|NZ_CP027418.1_3951001_3951181_+,NA|77aa|down_9|NZ_CP027418.1_3951211_3951442_+	NA|80aa|up_9|NZ_CP027418.1_3940525_3940765_-	NA	NA|71aa|up_8|NZ_CP027418.1_3940768_3940981_-	NA	NA|117aa|up_7|NZ_CP027418.1_3940984_3941335_-	NA	NA|99aa|up_6|NZ_CP027418.1_3941339_3941636_-	NA	NA|178aa|up_5|NZ_CP027418.1_3941650_3942184_-	NA	NA|99aa|up_4|NZ_CP027418.1_3942176_3942473_-	NA	NA|77aa|up_3|NZ_CP027418.1_3942469_3942700_-	NA	NA|57aa|up_2|NZ_CP027418.1_3942702_3942873_-	NA	NA|456aa|up_1|NZ_CP027418.1_3942894_3944262_-	TIGR00665, DnaB, replicative DNA helicase	NA|197aa|up_0|NZ_CP027418.1_3944258_3944849_-	PRK08116, PRK08116, hypothetical protein; Validated	NA|75aa|down_0|NZ_CP027418.1_3945655_3945880_-	NA	NA|152aa|down_1|NZ_CP027418.1_3945897_3946353_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|62aa|down_2|NZ_CP027418.1_3946391_3946577_-	pfam14549, P22_Cro, DNA-binding transcriptional regulator Cro	NA|214aa|down_3|NZ_CP027418.1_3946684_3947326_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|111aa|down_4|NZ_CP027418.1_3947810_3948143_+	NA	NA|84aa|down_5|NZ_CP027418.1_3948151_3948403_+	NA	NA|680aa|down_6|NZ_CP027418.1_3948415_3950455_+	PRK09709, PRK09709, exodeoxyribonuclease VIII	NA|167aa|down_7|NZ_CP027418.1_3950454_3950955_+	pfam05565, Sipho_Gp157, Siphovirus Gp157	NA|60aa|down_8|NZ_CP027418.1_3951001_3951181_+	NA	NA|77aa|down_9|NZ_CP027418.1_3951211_3951442_+	NA
