assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002984395.1_ASM298439v1	NZ_CP027426	Klebsiella oxytoca strain FDAARGOS_335 chromosome, complete genome	1	1720904-1720988	1	CRISPRCasFinder	no		csa3,cas3,RT,DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	GATTCACAGTCGTCTGCGGTCCG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|180aa|up_9|NZ_CP027426.1_1708477_1709017_+	PRK15296, PRK15296, fimbrial protein SthA	NA|229aa|up_8|NZ_CP027426.1_1709075_1709762_+	PRK15295, PRK15295, fimbrial assembly chaperone	NA|864aa|up_7|NZ_CP027426.1_1709715_1712307_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|207aa|up_6|NZ_CP027426.1_1712303_1712924_+	PRK15293, PRK15293, fimbrial protein SthD	NA|366aa|up_5|NZ_CP027426.1_1712945_1714043_+	PRK15292, PRK15292, type 1 fimbrial protein	NA|550aa|up_4|NZ_CP027426.1_1714086_1715736_-	PRK09395, actP, cation/acetate symporter ActP	NA|105aa|up_3|NZ_CP027426.1_1715732_1716047_-	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|653aa|up_2|NZ_CP027426.1_1716229_1718188_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|438aa|up_1|NZ_CP027426.1_1718599_1719913_+	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|228aa|up_0|NZ_CP027426.1_1720065_1720749_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|716aa|down_0|NZ_CP027426.1_1721034_1723182_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|304aa|down_1|NZ_CP027426.1_1723456_1724368_-	PRK09698, PRK09698, D-allose kinase; Provisional	NA|232aa|down_2|NZ_CP027426.1_1724351_1725047_-	PRK09722, PRK09722, allulose-6-phosphate 3-epimerase; Provisional	NA|327aa|down_3|NZ_CP027426.1_1725057_1726038_-	PRK09699, PRK09699, D-allose ABC transporter permease	NA|511aa|down_4|NZ_CP027426.1_1726016_1727549_-	PRK09700, PRK09700, D-allose ABC transporter ATP-binding protein AlsA	NA|312aa|down_5|NZ_CP027426.1_1727625_1728561_-	PRK09701, PRK09701, D-allose transporter substrate-binding protein	NA|296aa|down_6|NZ_CP027426.1_1728624_1729512_-	PRK11337, PRK11337, MurR/RpiR family transcriptional regulator	NA|150aa|down_7|NZ_CP027426.1_1729877_1730327_+	PRK05571, PRK05571, ribose-5-phosphate isomerase B; Provisional	NA|118aa|down_8|NZ_CP027426.1_1730396_1730750_+	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|132aa|down_9|NZ_CP027426.1_1730743_1731139_-	PRK09823, PRK09823, putative inner membrane protein; Provisional
GCF_002984395.1_ASM298439v1	NZ_CP027426	Klebsiella oxytoca strain FDAARGOS_335 chromosome, complete genome	2	3388938-3389986	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas1,cas3f,cas8f	csa3,cas3,RT,DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	17,17,13	17	TypeI-F	csa3,cas3,RT,DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|244aa|up_9|NZ_CP027426.1_3379136_3379868_-	PRK15007, PRK15007, arginine ABC transporter substrate-binding protein	NA|243aa|up_8|NZ_CP027426.1_3379887_3380616_-	PRK11124, artP, arginine transporter ATP-binding subunit; Provisional	NA|172aa|up_7|NZ_CP027426.1_3380940_3381456_-	PRK10533, PRK10533, putative lipoprotein; Provisional	NA|108aa|up_6|NZ_CP027426.1_3381573_3381897_+	PRK02877, PRK02877, hypothetical protein; Provisional	NA|277aa|up_5|NZ_CP027426.1_3381893_3382724_+	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|338aa|up_4|NZ_CP027426.1_3382720_3383734_-	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|478aa|up_3|NZ_CP027426.1_3383830_3385264_-	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	NA|334aa|up_2|NZ_CP027426.1_3385274_3386276_-	PRK10534, PRK10534, L-threonine aldolase; Provisional	NA|573aa|up_1|NZ_CP027426.1_3386430_3388149_-	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|145aa|up_0|NZ_CP027426.1_3388301_3388736_+	pfam07681, DoxX, DoxX	NA|323aa|down_0|NZ_CP027426.1_3390033_3391002_-	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional	NA|551aa|down_1|NZ_CP027426.1_3391012_3392665_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|down_2|NZ_CP027426.1_3392808_3393708_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|down_3|NZ_CP027426.1_3393831_3394527_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|down_4|NZ_CP027426.1_3394908_3396567_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|372aa|down_5|NZ_CP027426.1_3396741_3397857_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|down_6|NZ_CP027426.1_3397853_3399800_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|77aa|down_7|NZ_CP027426.1_3399868_3400099_-	PRK14998, PRK14998, cold shock-like protein CspD; Provisional	NA|106aa|down_8|NZ_CP027426.1_3400423_3400741_+	COG2127, COG2127, Uncharacterized conserved protein [Function unknown]	NA|761aa|down_9|NZ_CP027426.1_3400771_3403054_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional
GCF_002984395.1_ASM298439v1	NZ_CP027426	Klebsiella oxytoca strain FDAARGOS_335 chromosome, complete genome	3	3403245-3403753	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	csa3,cas3,RT,DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	8,8,8	8	TypeI-F	csa3,cas3,RT,DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|323aa|up_9|NZ_CP027426.1_3390033_3391002_-	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional	NA|551aa|up_8|NZ_CP027426.1_3391012_3392665_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_7|NZ_CP027426.1_3392808_3393708_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_6|NZ_CP027426.1_3393831_3394527_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_5|NZ_CP027426.1_3394908_3396567_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|372aa|up_4|NZ_CP027426.1_3396741_3397857_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP027426.1_3397853_3399800_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|77aa|up_2|NZ_CP027426.1_3399868_3400099_-	PRK14998, PRK14998, cold shock-like protein CspD; Provisional	NA|106aa|up_1|NZ_CP027426.1_3400423_3400741_+	COG2127, COG2127, Uncharacterized conserved protein [Function unknown]	NA|761aa|up_0|NZ_CP027426.1_3400771_3403054_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|down_0|NZ_CP027426.1_3403906_3404890_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1080aa|down_1|NZ_CP027426.1_3404886_3408126_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|438aa|down_2|NZ_CP027426.1_3408143_3409457_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|312aa|down_3|NZ_CP027426.1_3409453_3410389_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|334aa|down_4|NZ_CP027426.1_3410399_3411401_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_5|NZ_CP027426.1_3411410_3411965_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_6|NZ_CP027426.1_3412999_3413218_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_7|NZ_CP027426.1_3413497_3414202_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_8|NZ_CP027426.1_3414240_3415962_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_9|NZ_CP027426.1_3415962_3417729_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
GCF_002984395.1_ASM298439v1	NZ_CP027426	Klebsiella oxytoca strain FDAARGOS_335 chromosome, complete genome	4	3412182-3412870	4,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	csa3,cas3,RT,DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	11,11,7	11	TypeI-F	csa3,cas3,RT,DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|649aa|up_9|NZ_CP027426.1_3397853_3399800_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|77aa|up_8|NZ_CP027426.1_3399868_3400099_-	PRK14998, PRK14998, cold shock-like protein CspD; Provisional	NA|106aa|up_7|NZ_CP027426.1_3400423_3400741_+	COG2127, COG2127, Uncharacterized conserved protein [Function unknown]	NA|761aa|up_6|NZ_CP027426.1_3400771_3403054_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|up_5|NZ_CP027426.1_3403906_3404890_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1080aa|up_4|NZ_CP027426.1_3404886_3408126_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|438aa|up_3|NZ_CP027426.1_3408143_3409457_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|312aa|up_2|NZ_CP027426.1_3409453_3410389_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|334aa|up_1|NZ_CP027426.1_3410399_3411401_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|up_0|NZ_CP027426.1_3411410_3411965_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_0|NZ_CP027426.1_3412999_3413218_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP027426.1_3413497_3414202_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP027426.1_3414240_3415962_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP027426.1_3415962_3417729_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|323aa|down_4|NZ_CP027426.1_3417843_3418812_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP027426.1_3419343_3419838_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1365aa|down_6|NZ_CP027426.1_3419973_3424068_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP027426.1_3424187_3424799_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP027426.1_3424807_3426151_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP027426.1_3426241_3427534_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_002984395.1_ASM298439v1	NZ_CP027426	Klebsiella oxytoca strain FDAARGOS_335 chromosome, complete genome	5	4720316-4720417	5	CRISPRCasFinder	no		csa3,cas3,RT,DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	ACTGCCCGCCAAACGGTCAGAATGA	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,RT,DEDDh,WYL,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	NA,NA	NA|402aa|up_9|NZ_CP027426.1_4709221_4710427_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|241aa|up_8|NZ_CP027426.1_4710527_4711250_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|256aa|up_7|NZ_CP027426.1_4711233_4712001_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|257aa|up_6|NZ_CP027426.1_4712065_4712836_-	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold	NA|300aa|up_5|NZ_CP027426.1_4712931_4713831_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|316aa|up_4|NZ_CP027426.1_4713827_4714775_-	cd01146, FhuD, Fe3+-siderophore binding domain FhuD	NA|351aa|up_3|NZ_CP027426.1_4714791_4715844_-	pfam01032, FecCD, FecCD transport family	NA|342aa|up_2|NZ_CP027426.1_4715840_4716866_-	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|up_1|NZ_CP027426.1_4716862_4717684_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|674aa|up_0|NZ_CP027426.1_4718241_4720263_+	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|263aa|down_0|NZ_CP027426.1_4720480_4721269_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|332aa|down_1|NZ_CP027426.1_4721262_4722258_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|346aa|down_2|NZ_CP027426.1_4722238_4723276_-	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|325aa|down_3|NZ_CP027426.1_4723272_4724247_-	cd13558, PBP2_SsuA_like_2, Putative substrate binding domain of sulfonate binding protein, the type 2 periplasmic binding protein fold	NA|382aa|down_4|NZ_CP027426.1_4724258_4725404_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|362aa|down_5|NZ_CP027426.1_4725400_4726486_-	cd01094, Alkanesulfonate_monoxygenase, Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite	NA|298aa|down_6|NZ_CP027426.1_4726631_4727525_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|199aa|down_7|NZ_CP027426.1_4727632_4728229_+	COG5553, COG5553, Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]	NA|527aa|down_8|NZ_CP027426.1_4728230_4729811_+	cd01535, 4RHOD_Repeat_4, Member of the Rhodanese Homology Domain superfamily, repeat 4	NA|468aa|down_9|NZ_CP027426.1_4730115_4731519_-	pfam09362, DUF1996, Domain of unknown function (DUF1996)
